mRNA_F-serratus_M_contig826.19658.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig826.19658.1
Unique NamemRNA_F-serratus_M_contig826.19658.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5KGJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 6.640e-36
Identity = 60/69 (86.96%), Postives = 62/69 (89.86%), Query Frame = -1
Query:  147 ALRNITISTQYVSMRLRFAVRRLPQPLKSRSICAAEAWFPNTCWATGARVGKWFLPLVAHQPSTSFGCS 353
            AL NITIS  YVS+RLRF V R+PQPLKSRSICAAEAWFPNTCWATGARVG WFLPLVAHQPSTS GCS
Sbjct:   14 ALGNITISNPYVSVRLRFEVMRVPQPLKSRSICAAEAWFPNTCWATGARVGNWFLPLVAHQPSTSLGCS 82          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 8.270e-33
Identity = 58/92 (63.04%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   97 VEGDIVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASP 372
            V  +I RY + ++T +EL  +++L WW   G+  FP LAPVAQQVFGNQA AAQ+ERDFSGC NLLT NRSRMDTYWVEMVMFL A  +  P
Sbjct:    8 VSQEIERYHSLYITAEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIP 99          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.320e-31
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  109 IVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*SLRRISARVFPGVFRG 441
            I R+QA +MT +EL  ++VL WW   G+  FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL    K  P     P    +      P  F G
Sbjct:   87 IDRFQALYMTAEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 197          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.290e-30
Identity = 68/144 (47.22%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   10 FSSFGRRAAVGGDGSSGVGGAERDPVAEAVEGDIVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*SLRRISARVFPGVFRG 441
            F+S  R    G     G G +E   + + V  ++ R+QA +MT +EL  ++VL WW   G+  FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL    K  P     P    +      P  F G
Sbjct:  452 FASLARNRVRGDTEDVGEGDSEDKVLMQQVSQELERFQALYMTAEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 595          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 5.820e-30
Identity = 69/147 (46.94%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    4 SVFSSFGRRAAVGGDGSSGVGGAERDPVAEAVEGDIVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*SLRRISARVFPGVFRGK 444
            S FS FGR  A           +E   + E V G++  Y++ F+  DEL  ++VL WW   GKN FP LAPVAQQVFGNQA+ +Q+ERDFSG G LL  NRSRMDTYWVE+VMFL A     P     P    +      P  F G+
Sbjct:  139 SRFSLFGRGDARSSTDDMADEDSEDRKLGEVVAGELEHYKSLFIKADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHGR 285          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.980e-29
Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   10 FSSFGRRAAVGGDGSSGVGGAERDPVAEAVE----GDIVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*SLRRISARVFPGVFRG 441
            F++FGR           VGG E     +AVE     +I+RY+  FMT ++LHP +VL +WAT G++ FP L  VAQQ FG+Q SAA +ERDFSGCG  L  NRSR++ YWVEMVMFL A  K  P+    P    +   +  P  F+G
Sbjct:  687 FAAFGRS----------VGGVEESKQGDAVEQEVANEIMRYKGVFMTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKG 824          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 6.870e-26
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 1
Query:   67 GAERDPVAEAVEGDIVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASP--RTVPS 387
            G + D V E V G+I+RY+  FM P +L P DVL +W   GK  FP+L  VAQQ FG+QASAAQIERDFS CG   T NRSR + YW+EMVM LK   +  P  + +PS
Sbjct:  460 GGDVDFVEEEVSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPS 568          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.420e-21
Identity = 48/81 (59.26%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  199 FPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*SLRRISARVFPGVFRG 441
            FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL    K  P     P    +      P  F G
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNG 82          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.890e-21
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   94 AVEGDIVRYQAHFMTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*SLRRISARVFPGVFRG 441
            +V G+I R +A  M   +L P+DVL +W   G++ FP L  VAQQ FG+QA AAQIERDFS  G L  +NR+R+D YWVEMV+FLKA  +  P     P    +      P  F+G
Sbjct:  364 SVAGEIQRSRALQMNSSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKG 479          
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.280e-20
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1
Query:  160 DVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKATSKASPR-TVPS--P*SLRRISARVFPG 429
            +VL +W   GK+ FP+L  VAQQ FGNQASAA +ERDFSGCG  +  NRSR+D YWVEMVMFLKA   +S R  +P   P  +R+     F G
Sbjct:  389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRINIPQIDPKDIRKCLPAKFEG 481          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig826.19658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KGJ7_9PHAE6.640e-3686.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSA7_9PHAE8.270e-3363.04Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE7.320e-3154.95Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KZ46_9PHAE4.290e-3047.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE5.820e-3046.94Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE2.980e-2945.95Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE6.870e-2654.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP16_9PHAE6.420e-2159.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE6.890e-2146.55Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE1.280e-2054.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig826contigF-serratus_M_contig826:89462..90467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size713
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig826.19658.1prot_F-serratus_M_contig826.19658.1Fucus serratus malepolypeptideF-serratus_M_contig826 89782..90335 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932451.4413135-UTR-F-serratus_M_contig826:89461..897811622932451.4413135-UTR-F-serratus_M_contig826:89461..89781Fucus serratus maleUTRF-serratus_M_contig826 89462..89781 -
1690964315.2170794-UTR-F-serratus_M_contig826:89461..897811690964315.2170794-UTR-F-serratus_M_contig826:89461..89781Fucus serratus maleUTRF-serratus_M_contig826 89462..89781 -
1622932451.4954433-UTR-F-serratus_M_contig826:90335..904671622932451.4954433-UTR-F-serratus_M_contig826:90335..90467Fucus serratus maleUTRF-serratus_M_contig826 90336..90467 -
1690964315.271506-UTR-F-serratus_M_contig826:90335..904671690964315.271506-UTR-F-serratus_M_contig826:90335..90467Fucus serratus maleUTRF-serratus_M_contig826 90336..90467 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932451.4652035-CDS-F-serratus_M_contig826:89781..900271622932451.4652035-CDS-F-serratus_M_contig826:89781..90027Fucus serratus maleCDSF-serratus_M_contig826 89782..90027 -
1690964315.238669-CDS-F-serratus_M_contig826:89781..900271690964315.238669-CDS-F-serratus_M_contig826:89781..90027Fucus serratus maleCDSF-serratus_M_contig826 89782..90027 -
1622932451.4801893-CDS-F-serratus_M_contig826:90320..903351622932451.4801893-CDS-F-serratus_M_contig826:90320..90335Fucus serratus maleCDSF-serratus_M_contig826 90321..90335 -
1690964315.255673-CDS-F-serratus_M_contig826:90320..903351690964315.255673-CDS-F-serratus_M_contig826:90320..90335Fucus serratus maleCDSF-serratus_M_contig826 90321..90335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig826.19658.1

>prot_F-serratus_M_contig826.19658.1 ID=prot_F-serratus_M_contig826.19658.1|Name=mRNA_F-serratus_M_contig826.19658.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MTPDELHPKDVLGWWATKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGC
GNLLTANRSRMDTYWVEMVMFLKATSKASPRTVPSP*
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mRNA from alignment at F-serratus_M_contig826:89462..90467-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig826.19658.1 ID=mRNA_F-serratus_M_contig826.19658.1|Name=mRNA_F-serratus_M_contig826.19658.1|organism=Fucus serratus male|type=mRNA|length=1006bp|location=Sequence derived from alignment at F-serratus_M_contig826:89462..90467- (Fucus serratus male)
GCCAGCGTGTTTTCGTCGTTCGGGCGGAGGGCGGCCGTTGGCGGCGACGG CAGCAGCGGTGTGGGTGGTGCGGAGCGCGACCCGGTGGCGGAAGCTGTGG AGGGTGACATCGTCCGGTATCAAGCGCACTTCATGACCCCGGATGAGGTA TGCGTGGTTGGATTTGGATTTGCGACATGCGAAAGCGTACATGTATTGGC GAGCCGTGTTTTTTGCCAAAATGTGATTTGCATGTGAGCCTTGTTGTGTC TTCGTTTCAACCAAAACTTGAACTTAAACTTCGGGAGTACAAATAAAAAT AAAAATGTACTCTGCGAAAAAAAAGCCAATGCAACGCGGGTAGGATTAAA GATTAAGACTATGATTACACTTTTCGCGCTCCTCTCCAATATGTTTGGCC CTCTACCGTTCCTCCCGTCTGCCTTCTTGTCAATACGCAGCTGCATCCGA AGGACGTGCTCGGTTGGTGGGCGACCAAGGGCAAGAACCACTTCCCCACC CTGGCGCCTGTCGCCCAGCAGGTGTTCGGGAACCAGGCCTCTGCTGCGCA AATCGAGCGCGATTTCAGTGGTTGCGGTAACCTCCTGACCGCGAATCGGA GCCGCATGGACACGTACTGGGTGGAGATGGTGATGTTCCTCAAAGCAACT TCGAAAGCATCCCCGCGTACGGTGCCATCCCCATGATCGCTCCGAAGAAT ATCCGCTCGTGTCTTCCCGGGCGTTTTTCGGGGGAAGACAAGGACTTGTT GGAGGCTGAAAGCACCTTCGACCTCCTCAACAACACGGAGGCGCCGACAG CCGATGGCATGTCCGCTGGCATGGAGGAGGAATAGGATTCTTAGGTGGAA TGATATCGAGAGATATCTGTTCTGACACGATATATCTGGGCATTTTCCTG GTTACTGGTCGCGTGGGTGCACAAGTTCCAAGTGGTCCGTTCGGTACTTG CACTTGTACTTCAGTTGGACTCTGGAGGAGTTTTAAGTTTTAGGATTTGT TGGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig826:89462..90467-

>mRNA_F-serratus_M_contig826.19658.1 ID=mRNA_F-serratus_M_contig826.19658.1|Name=mRNA_F-serratus_M_contig826.19658.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig826:89462..90467- (Fucus serratus male)
ATGACCCCGGATGAGATGACCCCGGATGAGCTGCATCCGAAGGACGTGCT
CGGTTGGTGGGCGACCAAGGGCAAGAACCACTTCCCCACCCTGGCGCCTG
TCGCCCAGCAGGTGTTCGGGAACCAGGCCTCTGCTGCGCAAATCGAGCGC
GATTTCAGTGGTTGCGGTAACCTCCTGACCGCGAATCGGAGCCGCATGGA
CACGTACTGGGTGGAGATGGTGATGTTCCTCAAAGCAACTTCGAAAGCAT
CCCCGCGTACGGTGCCATCCCCATGACTGCATCCGAAGGACGTGCTCGGT
TGGTGGGCGACCAAGGGCAAGAACCACTTCCCCACCCTGGCGCCTGTCGC
CCAGCAGGTGTTCGGGAACCAGGCCTCTGCTGCGCAAATCGAGCGCGATT
TCAGTGGTTGCGGTAACCTCCTGACCGCGAATCGGAGCCGCATGGACACG
TACTGGGTGGAGATGGTGATGTTCCTCAAAGCAACTTCGAAAGCATCCCC
GCGTACGGTGCCATCCCCATGA
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