mRNA_F-serratus_M_contig8.19328.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19328.1
Unique NamemRNA_F-serratus_M_contig8.19328.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: A0A6H5JIK9_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK9_9PHAE)

HSP 1 Score: 391 bits (1004), Expect = 1.490e-129
Identity = 200/306 (65.36%), Postives = 245/306 (80.07%), Query Frame = 3
Query:  264 IGLKSASTMVYGSTSAVKSKILQLAAVTDRGGMAN---KGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGR---------RGEETTIVIAQEDDVNG---SLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVLGNVPVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            + +KS   M   S + VKSK+LQLAA  DRGGMAN   +GVS+AYLG++DDMR LV++LAQ +PV KPL++ +L+G+WEL+YTTVELFRASPFFQMVEAGY+DP+KS+LFFKLHQLQTGSWG S+IGR+TQ +DL D   PS   EGR+ T                G +   V+    D++G   SLESEVDLI+LPLTS+P++GFWKLLPTFGGCI+T+A CSL GD NE+V+L+VESTKLKAVEDVPLLP+AGP FEG EFPTG+VTK+V+GNVPVTKQTVVYIDD LRVM+D+AGEL+IY+R
Sbjct:    1 MAMKSPVRMASDSVAEVKSKVLQLAASMDRGGMANPGNRGVSHAYLGTKDDMRLLVESLAQLDPVNKPLTATELSGRWELVYTTVELFRASPFFQMVEAGYDDPEKSNLFFKLHQLQTGSWGASKIGRVTQTLDLIDSVPPSI--EGRDATATPAAEAEAAAAGAVEGSDKAGVVEDNTDMSGGSGSLESEVDLIILPLTSVPLVGFWKLLPTFGGCIATKAKCSLAGDNNEVVQLIVESTKLKAVEDVPLLPIAGPLFEGMEFPTGEVTKKVMGNVPVTKQTVVYIDDTLRVMEDKAGELYIYAR 304          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: A0A0G4EA07_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EA07_VITBC)

HSP 1 Score: 188 bits (478), Expect = 6.840e-51
Identity = 106/291 (36.43%), Postives = 166/291 (57.04%), Query Frame = 3
Query:  300 STSAVKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFF-EGREFPTGQVTKQVLGNVPVTKQTVVYIDDNLRVMQDEAGELFIYSRFDAPTDRNERG 1169
            ST+ +K ++LQLAA TDRG  A K         ++ +  +VD+L+   P +   S   LNG W L+Y + +LFR+SPFF  ++A Y+D  K+ LFFKLH+LQT SWG S I ++ Q                               T++  + +  +G L S+ ++ +LP T +P++G+WKLLPTFGG + + A+ S+ GD N+ ++L V+ TK+KA ED+PL+P+ G F  E        V K++ G+VP  + T V++D  +R+ +D  GE+F+Y R D   D ++ G
Sbjct:   56 STADLKMRLLQLAASTDRGQQATKR-------QKEQISNVVDDLSSRGPFD--CSPGMLNGSWVLVYASAQLFRSSPFFLSIQASYDDSKKASLFFKLHELQTRSWGFSEIAQVGQ-------------------------------TLLFPEANSTDGRLRSDFNIKVLPSTVVPLVGWWKLLPTFGGNVRSIANASISGDANQHLDLTVDLTKVKASEDLPLMPLLGQFLAEQTGIRVSNVWKRLRGSVPTARVTHVFVDSGMRIAKDSQGEVFVYVR-DVDDDFDDLG 305          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: A0A7S2Q3B1_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2Q3B1_9DINO)

HSP 1 Score: 162 bits (411), Expect = 1.310e-42
Identity = 97/274 (35.40%), Postives = 148/274 (54.01%), Query Frame = 3
Query:  330 QLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVE--LFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVL---GNVPVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            +LAA  DRG   N    + Y    +  R L++ +    P   P S A+++G+WEL+++TV+  +FR+SPFF  V+      D+SDLFFKLH+LQ  SWG+S++GR+ Q I+ T+                                    G L SE D  LL LT++PIIGFWKLLPTFGGC+ T +   L GD+   +++ V+ T+ + V  +P  P+AG    G+  P   + + +    G  PV    + Y+D+++R++ D  GELF+Y+R
Sbjct:    1 RLAAALDRGQAYNPTSGDHYAERMETARSLIEEIISEAP-PPPTSLAEIDGEWELVFSTVKHGIFRSSPFFLAVQEALGGRDQSDLFFKLHELQVMSWGISKVGRVAQYINSTE------------------------------------GKLYSEFDTSLLSLTTIPIIGFWKLLPTFGGCVVTASDVGLNGDR---LDMEVQWTEAREVPGLP--PLAGAIL-GQRVPVNSIWQALPWNEGRRPVCSVALRYLDEDMRIVADNDGELFVYTR 231          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: A2C2Q8_PROM1 (PAP_fibrillin domain-containing protein n=6 Tax=Prochlorococcus TaxID=1218 RepID=A2C2Q8_PROM1)

HSP 1 Score: 161 bits (408), Expect = 5.060e-42
Identity = 96/281 (34.16%), Postives = 152/281 (54.09%), Query Frame = 3
Query:  312 VKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVLGNV--PVTKQTVVYIDDNLRVMQDEAGELFIYSRFDAP 1148
            +K+ I Q+AA TDRG   N  ++  Y    ++M++LV++L   +P+   ++ + + G+WEL+Y++VELFR+SPFF  +E   ND  KSDLFFKLH LQ GS+G+S +GR+ Q ++ T                                     G + S  D  +  LT++PI+G++KLLPTFGG + T A+      KN I+ + +E TK+  V+ +  +P        R +P   V K +  N   P  + +V+Y+D +LR+++D  G LF+Y R   P
Sbjct:    7 LKALIYQVAAATDRGQRMNAMIAPMYQNKLEEMKKLVEDL---QPLSDEITQSSIEGEWELIYSSVELFRSSPFFLAIEKALNDKSKSDLFFKLHLLQVGSFGLSTVGRVGQYLNFT------------------------------------KGEMISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLANKLQL--KNNILSMELEKTKVSEVDGLGKIPFVNSILMERWYPVKNVWKLLPWNKENPNCEISVIYVDKDLRIIRDMHGALFVYIRPSIP 246          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: A0A7S4FT55_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FT55_9EUGL)

HSP 1 Score: 167 bits (422), Expect = 5.180e-42
Identity = 106/278 (38.13%), Postives = 151/278 (54.32%), Query Frame = 3
Query:  312 VKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRA-HCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVLGNV--PVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            +K KIL +AA+TDRG    K VS+A     D M+ LV  L  + P    +S  ++ GKWEL+Y++VELFR+SPFF  +E  +NDP KSDLFFKLH LQ GSWGVS IG ++Q ID             +ET                         +ES+ D  +  LT +PI+G++KLLPTFGG + T A +  L+GD   ++ + +E T++     VP +P        +  P   V + +  N   P     ++Y+DD+ RV++D+ G LFIY R
Sbjct:  201 LKRKILHVAALTDRGQRHLKIVSDAMKDREDMMKDLVKELVDNHPCY--ISEQKVAGKWELVYSSVELFRSSPFFLAIEQAFNDPSKSDLFFKLHLLQVGSWGVSTIGEVSQRIDFE-----------KET-------------------------MESDFDTTIFGLTVIPIVGWFKLLPTFGGRVVTEAKNLKLEGD---MLSMELERTQVINAPGVPRIPFVAGAVMDKWVPVNAVWQLLPWNKEKPTCSVRLLYVDDDFRVVEDQTGGLFIYMR 437          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: A0A061RCL2_9CHLO (Pilus assembly protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RCL2_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 1.110e-41
Identity = 98/281 (34.88%), Postives = 145/281 (51.60%), Query Frame = 3
Query:  312 VKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVP---LLPVAGPFFEGREFPTGQVTKQVL---GNVPVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            +K +ILQ +A  DRG + ++ VS+AY G R  + +L+  L  S   E     + + G+WEL+Y+T +LFR+SPFF  ++A + D +KS LFFKLH LQ  SWG S +GR+ Q ID                                      +    SE D I+  LT +PI G++KLLPTFGG + + A       +   +++ ++ T+++A   +P    LPV G      +FP  +V K +    G  P    TV Y+DD  R+M+D  GELF+YSR
Sbjct:   68 IKLQILQHSATLDRGQLHDRLVSDAYEGKRQKILELIQELC-SRKTESRFEKSMIAGEWELVYSTCQLFRSSPFFMAIQAAFADKEKSALFFKLHDLQVKSWGASTVGRVAQNIDFE------------------------------------SNQFRSEFDTIIFALTVVPIFGWFKLLPTFGGRVISYAEDLEFDIETGRLDMELKRTRVEAAPGIPNIKKLPVLGRALMDNDFPVSRVWKSLPWNGGRAPKCSVTVKYVDDTFRIMEDPDGELFVYSR 311          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: W7T369_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T369_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.840e-41
Identity = 110/317 (34.70%), Postives = 170/317 (53.63%), Query Frame = 3
Query:  201 SAFLTSASAGGRLTRYQASSNIGLKSASTMVYGSTSAVKSKILQLAAVTDRGGMANKGVSNA--YLGSRDDMRQLVDNL-AQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNE----IVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQV----LGNVPVTKQTVVYIDDNLRVMQDEAGE 1118
            S F++S    GR T    + ++ L S +T    S +++K K+ QLAA+TDRG + +  VS+   Y   R+ M  L++ L A+    ++ +S   L G+WEL+Y+T +LFR+SPFFQ +E  Y DP KS+LFFKLH+LQT SWG S+IGR+ Q IDL                               AQ      +L S  D +L PLT++P+IG++KLLPTFGG + + A      + ++     +E  V  T  K +  +  +P+ G + E ++FPT +    +     G  P     VVY+D++ R++++  GE
Sbjct:   54 SLFISSTVHNGRST----ARDLRLFSTATRSSLSVASIKLKVCQLAALTDRGKLQDPLVSDEGLYAAERETMVSLLELLIAKGRERKQAMSPVLLEGEWELVYSTKQLFRSSPFFQAIERAYADPTKSELFFKLHELQTCSWGASQIGRVAQTIDLQ------------------------------AQ------TLLSSFDTVLFPLTTIPLIGWFKLLPTFGGRVDSLADGLTVSESSQGTALRLEYAVAKTSFKRLAGLKTMPLLGAWLENKQFPTKEAWNLLPWNWSGPGPRCLVEVVYLDEDFRIVREGGGE 330          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: Q31AK5_PROM9 (Gram-negative pili assembly chaperone-like protein n=38 Tax=Prochlorococcus TaxID=1218 RepID=Q31AK5_PROM9)

HSP 1 Score: 159 bits (402), Expect = 3.920e-41
Identity = 99/277 (35.74%), Postives = 147/277 (53.07%), Query Frame = 3
Query:  312 VKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVLGNV--PVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            +KS I ++AAVTDRG   NK +S  Y    ++M +L+D+L     +   +S   L+G+WEL+++ VELFR+SPFF  +E   ND  KS+LFFKLHQLQ GS+G+S IGRI Q ID                                      N    S  D  +  LT++PI+G++KLLPTFGG + T A   +   KN  +++ ++ TK+  V+ +  +P        R +P   V  ++  N   P    ++VY+D+ +R+MQD  G +FIY R
Sbjct:    7 IKSNIYKIAAVTDRGQRLNKLISPMYEEKNNEMVELIDDLKN---LSFEISEKSLSGEWELIFSNVELFRSSPFFLAIENALNDEFKSNLFFKLHQLQVGSFGISTIGRIAQKIDFD------------------------------------NKEFISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLASDLVL--KNNSLDMNLQKTKVSKVDGLNKIPFFSELLMDRWYPVKDVWNKLPWNKESPNCHVSIVYLDEEMRIMQDMYGSIFIYIR 242          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: B9P2A1_PROMR (Putative Gram-negative pili assembly chaperone n=1 Tax=Prochlorococcus marinus str. MIT 9202 TaxID=93058 RepID=B9P2A1_PROMR)

HSP 1 Score: 158 bits (400), Expect = 7.530e-41
Identity = 98/277 (35.38%), Postives = 148/277 (53.43%), Query Frame = 3
Query:  312 VKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVLGNV--PVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            +KS I +++AVTDRG   NK +S  Y    ++M +L++ L   +     +S   L+G+WEL+++ VELFR+SPFF  +E   ND  KS+LFFKLHQLQ GS+G+S IGRI Q ID                                           S  D  +  LT++PI+G++KLLPTFGG + T A   +   KN ++++ ++ TK+  V+ +  +P        R FP  +V  ++  N   P  + TV+Y+D+ +R+MQD  G +FIY R
Sbjct:    7 IKSNIYKISAVTDRGQRLNKLISPIYEEKGNEMDELIEAL---KDFSFEISEKSLSGEWELIFSNVELFRSSPFFLAIEKALNDEFKSNLFFKLHQLQVGSFGISTIGRIAQKIDFDKK------------------------------------EFISTFDTTIFGLTTIPILGWFKLLPTFGGRVITLASDLVL--KNNVLDMNLQKTKVSKVDGLNKIPFFSELLMERWFPVKEVWNKLPWNKESPNCQVTVIYLDEEMRIMQDMYGSIFIYIR 242          
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Match: UPI001ADA2238 (pilus assembly protein n=1 Tax=Prochlorococcus marinus TaxID=1219 RepID=UPI001ADA2238)

HSP 1 Score: 158 bits (400), Expect = 7.530e-41
Identity = 97/277 (35.02%), Postives = 154/277 (55.60%), Query Frame = 3
Query:  312 VKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDNLAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSDLFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRRGEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCISTRAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVTKQVLGNV--PVTKQTVVYIDDNLRVMQDEAGELFIYSR 1136
            +K+ I ++AAVTDRG   NK V+  Y    +++  L+++L   +     +S   L+G+WEL+++ VELFR+SPFF  +E   ND  KS+LFFKLHQLQ GS+G+S IGRI Q ID           + +E T                          S  D I+  LT++PI+G++KLLPTFGG + T A+  +   KN ++++ ++ TK+  V+ +  +P        R +P  +V  ++  N   P  + +++Y+D+ +R+MQD  G +FIY R
Sbjct:    7 IKTNIYKIAAVTDRGQRLNKLVAPIYEEKANEIEDLIESL---KSFNFEISEQSLSGEWELIFSNVELFRSSPFFLAIEKALNDEFKSNLFFKLHQLQVGSFGISTIGRIAQKIDF----------DKKEFT--------------------------STFDTIIFGLTTIPILGWFKLLPTFGGRVITLANDLVL--KNNLLDMNLQKTKVSKVDGLNKIPFFSKLLMDRWYPVKEVWNKLPWNKESPNCQVSIIYLDEEMRIMQDIYGSIFIYIR 242          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIK9_9PHAE1.490e-12965.36PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A0G4EA07_VITBC6.840e-5136.43PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A7S2Q3B1_9DINO1.310e-4235.40Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A2C2Q8_PROM15.060e-4234.16PAP_fibrillin domain-containing protein n=6 Tax=Pr... [more]
A0A7S4FT55_9EUGL5.180e-4238.13Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A061RCL2_9CHLO1.110e-4134.88Pilus assembly protein n=1 Tax=Tetraselmis sp. GSL... [more]
W7T369_9STRA2.840e-4134.70Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
Q31AK5_PROM93.920e-4135.74Gram-negative pili assembly chaperone-like protein... [more]
B9P2A1_PROMR7.530e-4135.38Putative Gram-negative pili assembly chaperone n=1... [more]
UPI001ADA22387.530e-4135.02pilus assembly protein n=1 Tax=Prochlorococcus mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:870498..875890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.2
Seed ortholog evalue3.2e-107
Seed eggNOG ortholog2880.D8LRM1
Hectar predicted targeting categorychloroplast
EggNOG OGs2A2EM@1,2RXHW@2759
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-12_000330.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1790
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19328.1prot_F-serratus_M_contig8.19328.1Fucus serratus malepolypeptideF-serratus_M_contig8 870626..875278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932377.9629924-UTR-F-serratus_M_contig8:870497..8706251622932377.9629924-UTR-F-serratus_M_contig8:870497..870625Fucus serratus maleUTRF-serratus_M_contig8 870498..870625 +
1690964278.8278744-UTR-F-serratus_M_contig8:870497..8706251690964278.8278744-UTR-F-serratus_M_contig8:870497..870625Fucus serratus maleUTRF-serratus_M_contig8 870498..870625 +
1622932378.1100862-UTR-F-serratus_M_contig8:875278..8758901622932378.1100862-UTR-F-serratus_M_contig8:875278..875890Fucus serratus maleUTRF-serratus_M_contig8 875279..875890 +
1690964278.9229126-UTR-F-serratus_M_contig8:875278..8758901690964278.9229126-UTR-F-serratus_M_contig8:875278..875890Fucus serratus maleUTRF-serratus_M_contig8 875279..875890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932377.978974-CDS-F-serratus_M_contig8:870625..8708691622932377.978974-CDS-F-serratus_M_contig8:870625..870869Fucus serratus maleCDSF-serratus_M_contig8 870626..870869 +
1690964278.8412912-CDS-F-serratus_M_contig8:870625..8708691690964278.8412912-CDS-F-serratus_M_contig8:870625..870869Fucus serratus maleCDSF-serratus_M_contig8 870626..870869 +
1622932377.9954097-CDS-F-serratus_M_contig8:872710..8728801622932377.9954097-CDS-F-serratus_M_contig8:872710..872880Fucus serratus maleCDSF-serratus_M_contig8 872711..872880 +
1690964278.8514693-CDS-F-serratus_M_contig8:872710..8728801690964278.8514693-CDS-F-serratus_M_contig8:872710..872880Fucus serratus maleCDSF-serratus_M_contig8 872711..872880 +
1622932378.011738-CDS-F-serratus_M_contig8:873311..8734161622932378.011738-CDS-F-serratus_M_contig8:873311..873416Fucus serratus maleCDSF-serratus_M_contig8 873312..873416 +
1690964278.8617141-CDS-F-serratus_M_contig8:873311..8734161690964278.8617141-CDS-F-serratus_M_contig8:873311..873416Fucus serratus maleCDSF-serratus_M_contig8 873312..873416 +
1622932378.0263295-CDS-F-serratus_M_contig8:873571..8737151622932378.0263295-CDS-F-serratus_M_contig8:873571..873715Fucus serratus maleCDSF-serratus_M_contig8 873572..873715 +
1690964278.871905-CDS-F-serratus_M_contig8:873571..8737151690964278.871905-CDS-F-serratus_M_contig8:873571..873715Fucus serratus maleCDSF-serratus_M_contig8 873572..873715 +
1622932378.0454648-CDS-F-serratus_M_contig8:873978..8741101622932378.0454648-CDS-F-serratus_M_contig8:873978..874110Fucus serratus maleCDSF-serratus_M_contig8 873979..874110 +
1690964278.8840904-CDS-F-serratus_M_contig8:873978..8741101690964278.8840904-CDS-F-serratus_M_contig8:873978..874110Fucus serratus maleCDSF-serratus_M_contig8 873979..874110 +
1622932378.0641851-CDS-F-serratus_M_contig8:874467..8745781622932378.0641851-CDS-F-serratus_M_contig8:874467..874578Fucus serratus maleCDSF-serratus_M_contig8 874468..874578 +
1690964278.8933887-CDS-F-serratus_M_contig8:874467..8745781690964278.8933887-CDS-F-serratus_M_contig8:874467..874578Fucus serratus maleCDSF-serratus_M_contig8 874468..874578 +
1622932378.077357-CDS-F-serratus_M_contig8:874835..8749361622932378.077357-CDS-F-serratus_M_contig8:874835..874936Fucus serratus maleCDSF-serratus_M_contig8 874836..874936 +
1690964278.9027343-CDS-F-serratus_M_contig8:874835..8749361690964278.9027343-CDS-F-serratus_M_contig8:874835..874936Fucus serratus maleCDSF-serratus_M_contig8 874836..874936 +
1622932378.094699-CDS-F-serratus_M_contig8:875235..8752781622932378.094699-CDS-F-serratus_M_contig8:875235..875278Fucus serratus maleCDSF-serratus_M_contig8 875236..875278 +
1690964278.9120636-CDS-F-serratus_M_contig8:875235..8752781690964278.9120636-CDS-F-serratus_M_contig8:875235..875278Fucus serratus maleCDSF-serratus_M_contig8 875236..875278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19328.1

>prot_F-serratus_M_contig8.19328.1 ID=prot_F-serratus_M_contig8.19328.1|Name=mRNA_F-serratus_M_contig8.19328.1|organism=Fucus serratus male|type=polypeptide|length=350bp
MVPIARLSVYHVVVGIVLTCLNHASAFLTSASAGGRLTRYQASSNIGLKS
ASTMVYGSTSAVKSKILQLAAVTDRGGMANKGVSNAYLGSRDDMRQLVDN
LAQSEPVEKPLSSAQLNGKWELLYTTVELFRASPFFQMVEAGYNDPDKSD
LFFKLHQLQTGSWGVSRIGRITQVIDLTDPAGPSSGPEGRETTVDVQGRR
GEETTIVIAQEDDVNGSLESEVDLILLPLTSLPIIGFWKLLPTFGGCIST
RAHCSLKGDKNEIVELVVESTKLKAVEDVPLLPVAGPFFEGREFPTGQVT
KQVLGNVPVTKQTVVYIDDNLRVMQDEAGELFIYSRFDAPTDRNERGPL*
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mRNA from alignment at F-serratus_M_contig8:870498..875890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19328.1 ID=mRNA_F-serratus_M_contig8.19328.1|Name=mRNA_F-serratus_M_contig8.19328.1|organism=Fucus serratus male|type=mRNA|length=5393bp|location=Sequence derived from alignment at F-serratus_M_contig8:870498..875890+ (Fucus serratus male)
AACAAAAACGGACCAGTACATACGTGCACGTACCGCAGGGTGTGAATGCC CCGGCCGAGAGGGAGCTACAGTAGAAAGACTCGACATTTAACCACACCCA CATCGGCCCATATTTTCACTGGCGTAATATGGTTCCAATTGCTCGTCTCT CGGTGTATCATGTAGTAGTTGGCATTGTGTTGACGTGCTTGAATCATGCG TCCGCGTTCCTTACGTCAGCATCTGCCGGCGGCCGCCTGACTCGATATCA AGCTAGCTCAAATATCGGTTTAAAATCGGCCAGCACTATGGTCTATGGAA GTACGTCCGCCGTCAAGAGCAAGATTCTTCAGCTCGCGGCCGTCACGGAC AGGGGTGGTATGGCGAATAAAGGTAAGGCAAAAATATGCTAATAGAAAAG AGGGGAGACGAGATTTCGTAACGTCATAAACAATGTACTATCATATTACA TACCATACTTCGCTACATACATGTACACCTGGTATTACTACCTTTTGACT GACTGATCAGAAGGTTACGATGTACTACATACCATACTTCGCTACATACA TGTATGATACACCTGGTATTTATTTTTATTTTTTGGAGAAAAATCTGAAC GCATCTACCTATAGACCTTCAGAGCATCACTCAGAGGGAAAAACATGTCA AAACGTTTACCAGGTAGGTGGGATCATAGACTTCAAAAACAAAACCTCTT CATGGCATTTGAACAGGTTCCCCGATGGTAGTAACATTGCAAGTAACATT GGGTCAACAGTAGTATAATTTTATACTTTAATCGgggagaaGTATGCAGG GACACCAGACAAAAACAAAACAAAACCATTGGAGTACATAATTAAAATAC TTTAATAATAATATTGCCATCGACCTTTATACAATTATGACTTATAGTCT ATACCAGTATAACACAAAAAAAATGTTAAAAAATAAAATATGTGAAGATA AATACATTTACGTTTTCCGACAGGTCCGTACAGATTTTCCACTACGTGTA GAAAATTGTTGTTTCACACCGTAGGCGACAAATACAAAACCTCGTACATC ACATTTGAAATGGGTTCGCCGAAGGCAGTAACCTTGGGTCAACCAGTAGT ACAATATCAAGGAGAAACCCACCGTTATACTGTACAGTACCGGTTCTTTC AACATGCCCACTTCATATCAATAGTGGTTGTGCGGGAAAGAGAGGCGAAT ATTAATTGGTCCATGGTGACCTGCCAAGGCAGTACTCGGTCGGAACTACC TTGAGGTTTACTGGCGCTGTGCGGGCGGACTCTCGGCAGTGAACGCCATC GGTACGCAATTGCGTGGCCCGACAAACTCGGGACTGACCGGATTGTGTAT GGCGGTTTAATATAAATATATGGACACCGCCGCGGAACTCGGGGGGGATC CCGTAAGTAAGCACCAAATTCAGCCTGAGTATGGAGATGAGCAGGCTGAC GCGGGATAGGGCTGCCGAACTCGTCTCGCGAGACCAAATTCTAGTAACGT GTGCTGTCTTTGCATCACCATGGGACCAATTAATATGCGCCTCTTCCCAC ACCTACTGTATGTATGTATGGTCACATATATAAGCAAAGATATGGATCAA CCGGGTAAGGTTACCAATTCTACACATTGTCAGCTAAACAGGGAAAATTT ATCAGTACTTGACTTCGTGCTATTAATATTAATACTAAATATATGCTCAA GTGTGTTTGTACGTGTACGAAAGAAGTGTAAAGCAAAACACATTTTTTGT AGTTTCAAGTAGAGCCAGTAGTGCTACTCTCGATTAACGCACTAGAATCC TAAGTCTGTGCTCGTCTACCACCTCCCAAGAGCAATACAATGAATCACAA AACCATTGTATCAGTAGCTCTGTAAGTAATGGCGCAAAAAAGAACATAGG TCTACTTGCTATTCCTACTATTAATAGATAGAGAAGGAGCGAACTTTGTC CAGTACAAGGGGGCAGCACTATTTCGTGAGAAATGTCTAAAATTAGAAGT AACGTGCACAGGGAAGAAGAAGGTACATGATATATTCTGCAATGTAACGT CGGGTTTTTATCCAGGCATACAGCTTAAGTATGCCCTATTAATAGTATAT ACGAAATGTGTATCAACCCGTAATCGTTCCGGTAGCCTCCTCTATACTGT ACTGTACTTGTCTCCAACTGAATCAAGAGGTGCAGATAATAATTTACGAG TAACGATCCGCAGGCGTTTCGAACGCTTACTTGGGCTCGAGGGACGACAT GCGACAGCTCGTGGACAACCTTGCGCAGTCGGAACCCGTGGAGAAACCAC TTTCGTCTGCGCAACTCAATGGAAAGTGGGAGCTGCTGTACACCACGGTG GAGCTCTTTCGGGCTTCCCCGTTTTTCCAGATGGTGAGCATCGATCTACG TTTCGCTGCTGCCTCCTTTTGTTTCTGTGGGTTGAGCTACATATCAGACG CTATTTGTGGTGTGGGCAGTCCAATGAGTCCCGCTTGGAGGTATGCTCTG ATTGGCATCTGAGCAAGCGTCTAGAGCGTTGCTACTTGGTGAATCAGATG TGAAGCGCTACTCTCAAATCGAGACAGTATAATGTGTAAATGGCTAATGC GTAGACCCATGGAAACGTTCCCGACGCATGCAGTAGTCCCTCCGCTGTAG GTGAGAGGTGGAAGTAATTTCAGCAACGCTGCTTGAGGGATTCCCGTCTC CACAGAGAGCGCGTGTGCTGGGAAACACATCTCTAAGTCACACGGCGGCA AAAAATACATGAACATGCCGAGATTCAGCGTTGGCTCCGACTCGGGTGCT GAATCCTGAAGTAGGTGGAGGCCGGCTACAACGACCCAGATAAGTCGGAC CTGTTCTTCAAGCTTCATCAGCTGCAAACGGGGTCGTGGGGTGTCAGTCG CATCGGTCGCATAACGCAGGTGAGAGAATCCGACACTATATTACGCGCGC GTTTTGAGGGGAAGCTCTGCTGCTGCTCCTATAATGGTATTACGACATCT CGATGATTGTATTGATGACGTTTCACGACACCCTCGCGATCGGCCGGCTG GTATTTCTCCCGGGCAATGCATAGGTCATCGACCTGACTGACCCGGCTGG ACCGAGCTCCGGTCCAGAGGGCAGGGAGACAACCGTGGATGTTCAAGGGA GGAGAGGAGAAGAAACAACGATTGTAATAGCTCAAGAGGACGATGTAAAT GGTTCCTTGGAATCGGAGGTGAGCCGGCGAGGGCCTTGTGCAGGCGGTAT GGTAAAAGATCCTCGGCGACCCTTTCCCTTCTTGCTGCGAAAATTCTGGA GGGTTCTGATGACCGCCTCCAGTCACTCACGCTCGGCGGGAGGCAAACAC CCTGTCAAGGGTATCCCCATATCATGCAACAAGCCAGCGGTGCAAAATGT CATCGGTCGAGGTCTGAACGTGAAAAAATAAGATCGCATTCTTCGGCACC ACCTTCATATTGCCCATGCTTCTTCCGATAGGTGGATCTCATTCTTCTAC CCCTGACTTCCCTTCCCATCATTGGCTTCTGGAAGCTCTTGCCCACGTTT GGCGGCTGTATTTCGACGAGGGCCCACTGCTCGCTCAAGGGGGACAAAAA CGAAATCGTCGAGGTTTGTGCGATCGGGTACGGGGGTCGTTAGCTGACTG TTGATTCCCGTCCCGCCCATAGATTCGTGCCAGTATTCGACAGCAACCGG CAGATGTGGACGGCGAAGACATAGCACTTTGAGGGGAATCGCTTTATCCT TTCCCCCCGGTCTGTGTGATTCAACCGCGACGGTCTCTTGATCGCGGCTA ACCTTAAAAGGAGTGTCCGAGTTCTCATTATTCCGCGACATGCTGAAGCA TCTTCATTCGCGGCTTTATGCACGGTCAGGGGTGCCATGCGTCAGCTTTA TCTGCAAAGATATTTAAGGGTTCCACCCGCCGTTAACCAGTCGCATTTCT ACTCTTGTTACGGACGATAGCTGGTCGTGGAGTCGACGAAGCTCAAGGCG GTAGAGGACGTGCCGCTCCTTCCGGTGGCGGGGCCTTTTTTCGAAGGCAG AGAATTTCCCACCGGACAGGTCACAAAACAGGCGAGCAAAACCAAATACC CACGATGGCGCCTCTGGTGTGCTTTTGTTCCTCGTAAACCTCATTTCAAC CGATGCTCGAGCTGCATTCAAGTAACTGATATCTTCTACCTTCCCACCGG AGGGTATTGGGAGACACGTTCTTCCTTAACTGTTTGTCGATGATGATACT ATCCCTCGGGTTCTGGCCATTGCTCGCTTGAGGAACGGTACACATCACAC TTGCCGCTTGGCCATACGGCACACGTACTCGTTGACAGGTGCTAGGAAAC GTTCCAGTAACGAAACAGACGGTCGTGTACATCGATGACAACCTGCGGGT TATGCAAGACGAAGCTGGTGAACTGTTCATTTATTCCAGGCAAGTAGAAA CTTCCACACTGTAGTACCCAAAAACAACTGCCGACTCACGCTGGTCGGGT CTCTGCTATCGATTACTGTCAGGAATGGACTTTGCTGTGAACACCGTATC AACTTCATTGCTTCGCATGACTGTGGCCTGAACTGGTTACTACACACCGT TTGACCAGGTTACATATTTTGGCAGGCTCTCGGCCCGTTCACGAATGCTG AGCTGCCGCCCAGATAAGAGAATAAAAGTCCGTGGCTGTGTCAGTAACTG ACCTCTTCTTATCCCGCGCCGTCGGCAGGCCGCTACAGATTTGACGCGCC AACGGACAGGAATGAACGCGGGCCGCTATGAAACACACTCTTCCACGCGA TTATGGGAAAGTTGAATTGTAAATGGGTTGAAAAAAGAGGAGGCCGACAG GGAAAAGCCTCGATGATAACTCCGTAGCACTTATAGAATGTACAGCGCGT GCTGTCGTCCGTAGTTGAACAAATTTTGATGATTCTCTATAGAACGCACA GAGTGCGTGCTGTCGTCAACAGTTGAATTCCCTTATTTTTTTTTCTGTGT CCTGGCGCCTAGAAGCTCCCGAGCTCTCCAAAGCCTTCTAAGAGAAAGCA GTTACTTATGTATATTTTTTCCGTTCATCCCTTGATGGTATTTCTTTCAA CGCGACGTCTTGTAGACGTGGAAACTTCGGTTCGAAAGCGTGTTGGAGAA GATAACTCGGCTAATGAAAGAGGGCAACCTGACGTGCATCAGCCTCGTGT GCGTTCGTGTTTGTGTGTCTCTTTATAATCCCCCTCGATGCTCCGTTGCT GATGATTGCACCTTATGAATCGTACCTGGGGGTAACCTGTTTCGATAGCG CTTCCATATGCATGTATGTATAGGAGTTTATTCTTAGCAAACGTGCTTTG ACCTCAAGGGGCTGACGCTATGCTCTCTCTATAGTAACGGTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:870498..875890+

>mRNA_F-serratus_M_contig8.19328.1 ID=mRNA_F-serratus_M_contig8.19328.1|Name=mRNA_F-serratus_M_contig8.19328.1|organism=Fucus serratus male|type=CDS|length=2100bp|location=Sequence derived from alignment at F-serratus_M_contig8:870498..875890+ (Fucus serratus male)
ATGGTTCCAATTGCTCGTCTCTCGGTGTATCATGTAGTAGTTGGCATTGT
GTTGACGTGCTTGAATCATGCGTCCGCGTTCCTTACGTCAGCATCTGCCG
GCGGCCGCCTGACTCGATATCAAGCTAGCTCAAATATCGGTTTAAAATCG
GCCAGCACTATGGTCTATGGAAGTACGTCCGCCGTCAAGAGCAAGATTCT
TCAGCTCGCGGCCGTCACGGACAGGGGTGGTATGGCGAATAAAGATGGTT
CCAATTGCTCGTCTCTCGGTGTATCATGTAGTAGTTGGCATTGTGTTGAC
GTGCTTGAATCATGCGTCCGCGTTCCTTACGTCAGCATCTGCCGGCGGCC
GCCTGACTCGATATCAAGCTAGCTCAAATATCGGTTTAAAATCGGCCAGC
ACTATGGTCTATGGAAGTACGTCCGCCGTCAAGAGCAAGATTCTTCAGCT
CGCGGCCGTCACGGACAGGGGTGGTATGGCGAATAAAGGCGTTTCGAACG
CTTACTTGGGCTCGAGGGACGACATGCGACAGCTCGTGGACAACCTTGCG
CAGTCGGAACCCGTGGAGAAACCACTTTCGTCTGCGCAACTCAATGGAAA
GTGGGAGCTGCTGTACACCACGGTGGAGCTCTTTCGGGCTTCCCCGTTTT
TCCAGATGGCGTTTCGAACGCTTACTTGGGCTCGAGGGACGACATGCGAC
AGCTCGTGGACAACCTTGCGCAGTCGGAACCCGTGGAGAAACCACTTTCG
TCTGCGCAACTCAATGGAAAGTGGGAGCTGCTGTACACCACGGTGGAGCT
CTTTCGGGCTTCCCCGTTTTTCCAGATGGTGGAGGCCGGCTACAACGACC
CAGATAAGTCGGACCTGTTCTTCAAGCTTCATCAGCTGCAAACGGGGTCG
TGGGGTGTCAGTCGCATCGGTCGCATAACGCAGGTGGAGGCCGGCTACAA
CGACCCAGATAAGTCGGACCTGTTCTTCAAGCTTCATCAGCTGCAAACGG
GGTCGTGGGGTGTCAGTCGCATCGGTCGCATAACGCAGGTCATCGACCTG
ACTGACCCGGCTGGACCGAGCTCCGGTCCAGAGGGCAGGGAGACAACCGT
GGATGTTCAAGGGAGGAGAGGAGAAGAAACAACGATTGTAATAGCTCAAG
AGGACGATGTAAATGGTTCCTTGGAATCGGAGGTCATCGACCTGACTGAC
CCGGCTGGACCGAGCTCCGGTCCAGAGGGCAGGGAGACAACCGTGGATGT
TCAAGGGAGGAGAGGAGAAGAAACAACGATTGTAATAGCTCAAGAGGACG
ATGTAAATGGTTCCTTGGAATCGGAGGTGGATCTCATTCTTCTACCCCTG
ACTTCCCTTCCCATCATTGGCTTCTGGAAGCTCTTGCCCACGTTTGGCGG
CTGTATTTCGACGAGGGCCCACTGCTCGCTCAAGGGGGACAAAAACGAAA
TCGTCGAGGTGGATCTCATTCTTCTACCCCTGACTTCCCTTCCCATCATT
GGCTTCTGGAAGCTCTTGCCCACGTTTGGCGGCTGTATTTCGACGAGGGC
CCACTGCTCGCTCAAGGGGGACAAAAACGAAATCGTCGAGCTGGTCGTGG
AGTCGACGAAGCTCAAGGCGGTAGAGGACGTGCCGCTCCTTCCGGTGGCG
GGGCCTTTTTTCGAAGGCAGAGAATTTCCCACCGGACAGGTCACAAAACA
GCTGGTCGTGGAGTCGACGAAGCTCAAGGCGGTAGAGGACGTGCCGCTCC
TTCCGGTGGCGGGGCCTTTTTTCGAAGGCAGAGAATTTCCCACCGGACAG
GTCACAAAACAGGTGCTAGGAAACGTTCCAGTAACGAAACAGACGGTCGT
GTACATCGATGACAACCTGCGGGTTATGCAAGACGAAGCTGGTGAACTGT
TCATTTATTCCAGGTGCTAGGAAACGTTCCAGTAACGAAACAGACGGTCG
TGTACATCGATGACAACCTGCGGGTTATGCAAGACGAAGCTGGTGAACTG
TTCATTTATTCCAGATTTGACGCGCCAACGGACAGGAATGAACGCGGGCC
GCTATGAATTTGACGCGCCAACGGACAGGAATGAACGCGGGCCGCTATGA
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