mRNA_F-serratus_M_contig78.19039.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: D8LP22_ECTSI (CDGSH iron sulfur domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP22_ECTSI) HSP 1 Score: 150 bits (379), Expect = 1.820e-42 Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 3
Query: 63 MKISGTITALATLGCTDAFVFPASGTAVRQQTARSAERMNE-KVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
MK +G I AL TLGC +AFV PA T VR +TAR+AE++N + +LDKPKVVTM++V+ G KKVYCRCWKSGTFPLCDG+H KHNEATGDNVGPLIVSGPK
Sbjct: 1 MKTAGAI-ALVTLGCANAFVIPAGRTVVRAETARAAEKINTIEFELDKPKVVTMDSVDAGGKKVYCRCWKSGTFPLCDGAHVKHNEATGDNVGPLIVSGPK 100
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A7S2UEE3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEE3_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.770e-32 Identity = 65/100 (65.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query: 63 MKISGTITALATLGCTDAFVFPASGTAVRQQTARSAERMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
MK+ AL T T AF F A + T AER+N +VDLD PKV TME +EPG KKVYCRCW+SGTFPLCDGSH KHNEATGDNVGPLIVS PK
Sbjct: 1 MKVIAVAIALLTSQVT-AFTFVAKSHSA--STKLFAERINTQVDLDSPKVATMEKLEPGTKKVYCRCWQSGTFPLCDGSHMKHNEATGDNVGPLIVSVPK 97
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A4D9DCC5_9STRA (ZnF_CDGSH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCC5_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.430e-29 Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 3
Query: 111 DAFVFPASGTAVRQQTARSAERMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
DAF P+ G +++ A ++N KV+L+ PKVVTM + PGEKKV+CRCW+SGTFPLCDG+H KHNEATGDNVGPLI+S PK
Sbjct: 18 DAFFKPSVG----RRSLELASKINTKVELENPKVVTMTQLAPGEKKVFCRCWQSGTFPLCDGAHMKHNEATGDNVGPLIISNPK 97
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A7S0H1H1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H1H1_9EUKA) HSP 1 Score: 115 bits (288), Expect = 2.520e-28 Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 3
Query: 168 AERMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
AE++NE VDL+ PKVVTME ++ GEKKVYCRCWKSGTFPLCDG+HAK N+ +GDNVGPLIVSGPK
Sbjct: 80 AEKINELVDLESPKVVTMEELKVGEKKVYCRCWKSGTFPLCDGTHAKWNKQSGDNVGPLIVSGPK 144
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A7S3JTK3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTK3_9STRA) HSP 1 Score: 113 bits (283), Expect = 5.810e-28 Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 3
Query: 108 TDAFVFPASGTAVRQQTARSAERMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
T AF S + A + ++N +DLD KVVTM+ +E G+KKVYCRCW SGTFPLCDG+HAKHNEATGDNVGPLIVS PK
Sbjct: 30 TSAFTRQVSIRSFASLKAENPNKINTMIDLDSAKVVTMDELEAGKKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSSPK 114
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A7S2TZX7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TZX7_9EUKA) HSP 1 Score: 113 bits (282), Expect = 2.240e-27 Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 3
Query: 171 ERMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
ER+N +VDL+ PKVVTME + GEKKV+CRCWKSGTFPLCDG+HAK N+ TGDNVGPLIVSGPK
Sbjct: 85 ERINTEVDLESPKVVTMEDLGKGEKKVFCRCWKSGTFPLCDGTHAKWNKETGDNVGPLIVSGPK 148
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A7S1GHV5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHV5_CYCTE) HSP 1 Score: 111 bits (277), Expect = 5.500e-27 Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 3
Query: 174 RMNEKVDLDKPKVVTMETV-EPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
R+NE++DL+ KVVTMET+ EPG KKVYCRCW+SGTFPLCDG+HAKHNEATGDNVGPLIVS PK
Sbjct: 57 RINEQIDLESAKVVTMETLAEPG-KKVYCRCWQSGTFPLCDGTHAKHNEATGDNVGPLIVSVPK 119
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A812JQ04_9DINO (Cisd1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JQ04_9DINO) HSP 1 Score: 110 bits (274), Expect = 1.620e-26 Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 3
Query: 153 QTARSAE-RMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
+TAR AE ++N K+D + PKVVT E ++ G+KKVYCRCW SGTFPLCDG+HAKHNEATGDNVGPLIVS K
Sbjct: 52 RTARKAEGKINNKIDPEVPKVVTKEDLKAGDKKVYCRCWLSGTFPLCDGTHAKHNEATGDNVGPLIVSVKK 122
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A7R9W3H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3H1_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.820e-26 Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 3
Query: 174 RMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
++N K+DLD PKVV E +EPG+K VYCRCW SGTFPLCDG+HAKHN+ATGDNVGPLIVS K
Sbjct: 64 KINGKIDLDSPKVVNQEKLEPGKKGVYCRCWLSGTFPLCDGTHAKHNDATGDNVGPLIVSAAK 126
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Match: A0A835ZBW8_9STRA (CDGSH iron sulfur domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW8_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.000e-26 Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query: 63 MKISGTITALATLGCTDAFVFPASGTAVRQQTARSAERMNEKVDLDKPKVVTMETVEPGEKKVYCRCWKSGTFPLCDGSHAKHNEATGDNVGPLIVSGPK 362
M+ + LA++ AFV P+S ++R T S ER+N K+DL+ PKV TMET+ G KKVYCRCWKS TFPLC+G+H KHNE GDNVGPLIVS K
Sbjct: 1 MQTVFAVALLASVASVPAFV-PSS--SIRAPTHLS-ERINNKIDLESPKVATMETLPAGGKKVYCRCWKSATFPLCNGAHVKHNEEVGDNVGPLIVSVEK 96 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig78.19039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig78.19039.1 >prot_F-serratus_M_contig78.19039.1 ID=prot_F-serratus_M_contig78.19039.1|Name=mRNA_F-serratus_M_contig78.19039.1|organism=Fucus serratus male|type=polypeptide|length=101bp MKISGTITALATLGCTDAFVFPASGTAVRQQTARSAERMNEKVDLDKPKVback to top mRNA from alignment at F-serratus_M_contig78:6879..12345- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig78.19039.1 ID=mRNA_F-serratus_M_contig78.19039.1|Name=mRNA_F-serratus_M_contig78.19039.1|organism=Fucus serratus male|type=mRNA|length=5467bp|location=Sequence derived from alignment at F-serratus_M_contig78:6879..12345- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig78:6879..12345- >mRNA_F-serratus_M_contig78.19039.1 ID=mRNA_F-serratus_M_contig78.19039.1|Name=mRNA_F-serratus_M_contig78.19039.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig78:6879..12345- (Fucus serratus male)back to top |