mRNA_F-serratus_M_contig776.19016.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig776.19016.1
Unique NamemRNA_F-serratus_M_contig776.19016.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.310e-72
Identity = 158/430 (36.74%), Postives = 231/430 (53.72%), Query Frame = 2
Query:  173 QDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVK--KTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVI---------KLAANKHASRRTKHIDVKHHLVRD 1387
            + G+V +YK R VA+ +    G+ Y E YSP     S+R +LA   A+  E+   + + AFL  +++EEIY+E+PE  +E             V  L + +YGL QA   WN      + + GFE A ADPCV+ +  +GE E +V ++VDD+L  ++ +A +    A + +KFR+KD+  A + +G  I  + + R L   Q  Y ES+++KF  +  K    P   GV   +KADEP+  E+K +M+  P R  VG+LM+ A  TR DI+ AV  + RF ENPG  H  A +K+ +YL  TK+ GI Y G   G   EAY+D D     D RR V G +LML    + W S  Q   A  ++EAEY+ALS+ +KE  +      E GA   G  +          LA N     RTKHID+++H +R+
Sbjct:  122 EKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQL-TKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIRE 548          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 3.700e-71
Identity = 153/424 (36.08%), Postives = 231/424 (54.48%), Query Frame = 2
Query:  158 SENIGQDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVIK----------LAANKHASRRTKHIDVKHHLVR 1384
            S    ++GK++ +K R VA+ F  +  + Y    SP PS+ASI+++LA+A  K   L H++ +QA+  A +DEE+++++P    +    + +  + IYGL Q+G  W     D +   GFEQ KADPCVF K+VD    M++V++VDDIL    D+   +   A L +KF  K++ +  +  GC I R+ +A  L+  Q  Y++SMV +FDVK T++IPA  G     K        E EE  ++P R A+G++MW +T +R D++ AVRAV R    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D    A  + RR V G    +    +S  S+ Q + +  ++EAEY+A  E +KE  F     S       G+ IK          L  N  +S RTKHIDV++H +R
Sbjct:  789 SWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1202          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 6.120e-71
Identity = 153/424 (36.08%), Postives = 231/424 (54.48%), Query Frame = 2
Query:  158 SENIGQDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVIK----------LAANKHASRRTKHIDVKHHLVR 1384
            S    ++GK++ +K R VA+ F  +  + Y    SP PS+ASI+++LA+A  K   L H++ +QA+  A +DEE+++++P    +    + +  + IYGL Q+G  W     D +   GFEQ KADPCVF K+VD    M++V++VDDIL    D+   +   A L +KF  K++ +  +  GC I R+ +A  L+  Q  Y++SMV +FDVK T++IPA  G     K        E EE  ++P R A+G++MW +T +R D++ AVRAV R    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D    A  + RR V G    +    +S  S+ Q + +  ++EAEY+A  E +KE  F     S       G+ IK          L  N  +S RTKHIDV++H +R
Sbjct: 1168 SWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1581          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 6.210e-71
Identity = 153/424 (36.08%), Postives = 231/424 (54.48%), Query Frame = 2
Query:  158 SENIGQDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVIK----------LAANKHASRRTKHIDVKHHLVR 1384
            S    ++GK++ +K R VA+ F  +  + Y    SP PS+ASI+++LA+A  K   L H++ +QA+  A +DEE+++++P    +    + +  + IYGL Q+G  W     D +   GFEQ KADPCVF K+VD    M++V++VDDIL    D+   +   A L +KF  K++ +  +  GC I R+ +A  L+  Q  Y++SMV +FDVK T++IPA  G     K        E EE  ++P R A+G++MW +T +R D++ AVRAV R    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D    A  + RR V G    +    +S  S+ Q + +  ++EAEY+A  E +KE  F     S       G+ IK          L  N  +S RTKHIDV++H +R
Sbjct: 1188 SWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1601          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 6.310e-71
Identity = 153/424 (36.08%), Postives = 231/424 (54.48%), Query Frame = 2
Query:  158 SENIGQDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVIK----------LAANKHASRRTKHIDVKHHLVR 1384
            S    ++GK++ +K R VA+ F  +  + Y    SP PS+ASI+++LA+A  K   L H++ +QA+  A +DEE+++++P    +    + +  + IYGL Q+G  W     D +   GFEQ KADPCVF K+VD    M++V++VDDIL    D+   +   A L +KF  K++ +  +  GC I R+ +A  L+  Q  Y++SMV +FDVK T++IPA  G     K        E EE  ++P R A+G++MW +T +R D++ AVRAV R    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D    A  + RR V G    +    +S  S+ Q + +  ++EAEY+A  E +KE  F     S       G+ IK          L  N  +S RTKHIDV++H +R
Sbjct: 1331 SWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1744          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 248 bits (634), Expect = 5.990e-70
Identity = 159/430 (36.98%), Postives = 232/430 (53.95%), Query Frame = 2
Query:  173 QDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEF---------PGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVK--KTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVI---------KLAANKHASRRTKHIDVKHHLVRD 1387
            + G+V +YK R VA+ +    G+ Y E YSP     SIR +L   +A+  E+   + + AFL   ++ EIY+E+PEE +E             V  L + +YGL QA   WN      + ++GFE A ADPCV+ +  +GE E +V ++VDD+L  ++  A +    A + +KFR+KDM  A + +G  I  + + R L   Q  Y ES+++KF  +  K    P   GV   +KADEP+  E+K +M+  P R  VG+LM+ A  TR DI+ AV  + RF ENPG  H  A +K+ +YL  TK+ GI Y G   G  +EAY+D D     D RR V G +LML +  + W S  Q   A  ++EAEY+ALS+ +KE  +      + GA   G  +          LA N     RTKHID+++H VR+
Sbjct:  453 EKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQL-TKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVRE 879          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A182HDZ7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HDZ7_AEDAL)

HSP 1 Score: 240 bits (612), Expect = 8.750e-70
Identity = 159/421 (37.77%), Postives = 229/421 (54.39%), Query Frame = 2
Query:  179 GKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGA---VGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVK--KTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEG--------QFSETGAGVYG----TVIKLAANKHASRRTKHIDVKHHLVRDA 1390
            GKV++YK R V + +   +G+ Y E YSP    +S+R L AMAA  + ++   +A  AFL+ DI+EEIY+E P  F + PG    V RLNK +YGL Q+   WN K    +  +G  Q++ DPC++  + DG+  + V V+VDD+L  + D A  +   A+L   FR+KD+  A  C+G  ITR + +  L  DQ  Y++SM+R+F+++  KT   P  +     SK   P  PEE E M+  P + AVG LM+ A  TR DI   V  + RF    G  H +AV  +F+YL  TK   + Y   G    +  Y+D D  + LD RR   G V +L   A+SW  + Q   +  T EAEY++LS  ++E         QF ET A        + I +A N   + RTKHID++HH +RDA
Sbjct:   75 GKVDRYKARLVIKGYSQRKGVDYDETYSPVVRHSSLRYLFAMAAKYNLQVDQMDAITAFLQGDIEEEIYMEQPPCFVK-PGGRQLVCRLNKALYGLKQSSRVWNTKLDAALKKLGLHQSEFDPCLYYWIEDGKV-LFVAVYVDDVLIFSNDAALKNNLKAKLSSTFRMKDLGSAVSCLGIRITRAKGSVSL--DQEAYIDSMLRRFNMQDAKTVSTPMNTAEKL-SKEMSPNTPEETERMKNIPYQEAVGCLMYLAQCTRPDILFTVNLLSRFNCCYGPKHWEAVKHLFRYLKGTKTIRLKYSAAGDSK-LVGYSDADWASDLDDRRSKSGYVFLLQGGAVSWCCKRQSTVSLSTCEAEYMSLSAAVQEASWWRGLVSQFGETDAIELRCDNQSTICIARNGGYTPRTKHIDIRHHYIRDA 489          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 4.030e-69
Identity = 150/419 (35.80%), Postives = 223/419 (53.22%), Query Frame = 2
Query:  173 QDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVIK----------LAANKHASRRTKHIDVKHHLVR 1384
            +DGK+EK+K R VA+ F  +  + Y    SP PS+ASI+++LA+A  K  +L H++ +QAF  A +DE++++ +P    E    V +  + IYGL Q+G  W     D +   GFEQ KADPCVF K+ D           D IL    D    +  A+ L + F  KD+ +  +  GC + R+ +A  L+  Q  Y++S+V +FDV+ T+ IPA+ GV    K D+       E   ++P R A+G++MW +T +R DI+ AVRAV R    P   H KA++KI  YL  T++ GITY  +G GL +  Y D       D RR V G    +    IS  S+ Q + +  ++EAEY+A  E +KE  F     S       G+ I+          L  N  +S R+KHIDV++H +R
Sbjct:   57 KDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLAS-LNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDD-------ESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIR 465          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 241 bits (615), Expect = 5.370e-69
Identity = 158/430 (36.74%), Postives = 231/430 (53.72%), Query Frame = 2
Query:  173 QDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPE---EFQEFPGAVGR------LNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVK--KTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTSEAEYVALSEVIKEGQF-----SETGAGVYGTVI---------KLAANKHASRRTKHIDVKHHLVRD 1387
            + G+V +YK R VA+ +    G+ Y E YSP     SIR +LA  +A+  E+   + + AFL   ++EEIY+E+ E   E  E   A G       L + +YGL QA   WN      + ++GFE A  DPCV+ +  +GE E +V ++VDD+L  ++ +A +    A + +KFR+KDM  A + +G  I  + + R L   Q  Y ES+++KF  +  K    P   GV   +KADEP+  E+K +M+  P R  VG+LM+ +  TR DI+ AV  + RF ENPG  H  A +K+ +YL  TK+ GI Y G   G  +EAY+D D     D RR V G +LML    + W S  Q   A  ++EAEY+ALS+ +KE  +      + GA   G  +          LA N      TKHID+++H +RD
Sbjct:  187 EKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQL-TKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAEQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRD 613          
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 6.410e-69
Identity = 149/430 (34.65%), Postives = 232/430 (53.95%), Query Frame = 2
Query:  158 SENIGQDGKVEKYKCRFVAQRFRPVEGMHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYIEIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADPCVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDDAGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTPSKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCENPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDTRRWV*GAVLMLAKVAISWYSRMQDVTASGTS-------EAEYVALSEVIKEGQF-----SETGAGVYGTVIKLAANKHA---------SRRTKHIDVKHHLVR 1384
            S    ++GK++ +K R VA+ F  +  + Y    SP PS+ASI+++LA+A  K   L H++ +QA+  A +DEE+++++P    +    + +  + IYGL Q+G  W     D +   GFEQ KADPCVF K+VD    M++V++VDDIL    D+   +   A L +KF  K++++  +  GC I R+ +   L+  Q  Y++SMV++FDV+ T++IPA+ GV    K D+ +  E       +P R A+G++MW +T +R D++ AVRAV R    P   H  A+ KI  YL  T++ GITY  +G GL +  Y D    A  + RR V G    +    +S  S+ Q + +  ++       EAEY    E +KE  F     S       G+ I++  N+ A         S RTKHIDV+ H +R
Sbjct:  343 SWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTXXXXXXTEAEYFTAGECVKEALFVRAVLSFVAPETSGSSIQVLDNQGAMALVQNPLSSGRTKHIDVRFHFIR 762          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig776.19016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q908_9STRA3.310e-7236.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KSG8_9PHAE3.700e-7136.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE6.120e-7136.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE6.210e-7136.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE6.310e-7136.08Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6A3YGI7_9STRA5.990e-7036.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A182HDZ7_AEDAL8.750e-7037.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE4.030e-6935.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA5.370e-6936.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JC10_9PHAE6.410e-6934.65Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig776contigF-serratus_M_contig776:244357..245749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue1.4e-42
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1393
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig776.19016.1prot_F-serratus_M_contig776.19016.1Fucus serratus malepolypeptideF-serratus_M_contig776 244597..245511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932317.2423866-UTR-F-serratus_M_contig776:244356..2445961622932317.2423866-UTR-F-serratus_M_contig776:244356..244596Fucus serratus maleUTRF-serratus_M_contig776 244357..244596 -
1690964250.1800947-UTR-F-serratus_M_contig776:244356..2445961690964250.1800947-UTR-F-serratus_M_contig776:244356..244596Fucus serratus maleUTRF-serratus_M_contig776 244357..244596 -
1622932317.283206-UTR-F-serratus_M_contig776:245511..2457491622932317.283206-UTR-F-serratus_M_contig776:245511..245749Fucus serratus maleUTRF-serratus_M_contig776 245512..245749 -
1690964250.205617-UTR-F-serratus_M_contig776:245511..2457491690964250.205617-UTR-F-serratus_M_contig776:245511..245749Fucus serratus maleUTRF-serratus_M_contig776 245512..245749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932317.26364-CDS-F-serratus_M_contig776:244596..2455111622932317.26364-CDS-F-serratus_M_contig776:244596..245511Fucus serratus maleCDSF-serratus_M_contig776 244597..245511 -
1690964250.194077-CDS-F-serratus_M_contig776:244596..2455111690964250.194077-CDS-F-serratus_M_contig776:244596..245511Fucus serratus maleCDSF-serratus_M_contig776 244597..245511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig776.19016.1

>prot_F-serratus_M_contig776.19016.1 ID=prot_F-serratus_M_contig776.19016.1|Name=mRNA_F-serratus_M_contig776.19016.1|organism=Fucus serratus male|type=polypeptide|length=305bp
MHYTEKYSPTPSTASIRMLLAMAAAKDGELRHFEAEQAFLKADIDEEIYI
EIPEEFQEFPGAVGRLNKVIYGLVQAGSCWNNKFCDGMTAIGFEQAKADP
CVFCKVVDGEAEMVVVVHVDDILAHAKDQATMDRFAAELGQKFRLKDMDD
AGYCMGCHITRNRKARELKFDQHLYVESMVRKFDVKKTTKIPAASGVPTP
SKADEPRNPEEKEEMRKFPCRVAVGALMWTATMTRLDIACAVRAVVRFCE
NPGTAHKKAVMKIFQYLFHTKEWGITYGGQGCGLCMEAYTDWDCGACLDT
RRWV*
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mRNA from alignment at F-serratus_M_contig776:244357..245749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig776.19016.1 ID=mRNA_F-serratus_M_contig776.19016.1|Name=mRNA_F-serratus_M_contig776.19016.1|organism=Fucus serratus male|type=mRNA|length=1393bp|location=Sequence derived from alignment at F-serratus_M_contig776:244357..245749- (Fucus serratus male)
GAACCGAGAAATCGGTGGCAGGCGATGGAATCGCAGGAATGGGACGAATG GCGGAAGGCAGAGGAGACTGAGATGCTTGGAATGGTCGAGAACTGCGTTT ATAAGCAGGTGATTCGGCCGAAGGATGTGCTCGTGATTGGCACGAAAATG ATATACAAGCGAAAACATCGGACAGGACGGCAAGGTCGAGAAGTACAAGT GTCGATTTGTCGCTCAAAGGTTTCGGCCGGTGGAAGGTATGCACTACACG GAAAAGTACTCGCCCACGCCATCAACCGCGTCAATCCGGATGCTTTTGGC GATGGCAGCGGCCAAGGACGGAGAGCTACGCCATTTCGAAGCAGAGCAGG CATTTCTGAAGGCGGATATTGACGAAGAAATATACATCGAGATCCCTGAG GAGTTTCAGGAGTTTCCGGGGGCAGTGGGACGGCTAAACAAGGTCATTTA CGGACTCGTGCAGGCGGGGAGCTGCTGGAACAATAAGTTCTGTGACGGCA TGACGGCGATTGGATTCGAACAGGCAAAGGCGGACCCGTGCGTCTTCTGC AAGGTCGTTGACGGGGAGGCGGAGATGGTGGTGGTAGTACACGTAGACGA CATCCTTGCCCACGCCAAAGATCAAGCGACGATGGATAGATTCGCCGCTG AGCTTGGGCAAAAGTTCAGATTGAAGGACATGGACGACGCCGGGTACTGC ATGGGCTGTCACATCACAAGGAACCGTAAGGCGCGCGAGTTGAAGTTCGA CCAACACTTGTACGTGGAGTCAATGGTAAGAAAGTTTGACGTCAAGAAGA CAACTAAGATACCGGCTGCGTCGGGGGTGCCGACGCCCTCAAAGGCGGAT GAACCGCGGAACCCAGAGGAGAAGGAGGAAATGAGGAAGTTCCCGTGCCG AGTGGCAGTGGGGGCGCTCATGTGGACGGCGACGATGACACGACTGGATA TTGCGTGCGCCGTACGCGCTGTGGTCAGGTTCTGCGAAAACCCTGGGACG GCGCATAAGAAGGCAGTGATGAAGATTTTCCAGTATCTCTTTCACACGAA AGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTTTGCATGGAAG CGTATACGGACTGGGATTGCGGAGCCTGCCTGGACACAAGACGGTGGGTT TAGGGTGCGGTGTTGATGTTGGCGAAGGTAGCGATCAGCTGGTACTCAAG GATGCAAGACGTGACAGCATCGGGTACCTCGGAGGCAGAGTACGTTGCCT TATCCGAGGTCATAAAGGAAGGTCAATTTTCTGAGACAGGTGCAGGAGTT TACGGAACCGTCATTAAGCTGGCCGCAAACAAACATGCTAGCCGTAGGAC TAAGCACATTGATGTAAAACATCATCTAGTAAGGGACGCGTCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig776:244357..245749-

>mRNA_F-serratus_M_contig776.19016.1 ID=mRNA_F-serratus_M_contig776.19016.1|Name=mRNA_F-serratus_M_contig776.19016.1|organism=Fucus serratus male|type=CDS|length=1830bp|location=Sequence derived from alignment at F-serratus_M_contig776:244357..245749- (Fucus serratus male)
ATGCACTACACGGAAAAGTACTCGCCCACGCCATCAACCGCGTCAATCCG
GATGCTTTTGGCGATGGCAGCGGCCAAGGACGGAGAGCTACGCCATTTCG
AAGCAGAGCAGGCATTTCTGAAGGCGGATATTGACGAAGAAATATACATC
GAGATCCCTGAGGAGTTTCAGGAGTTTCCGGGGGCAGTGGGACGGCTAAA
CAAGGTCATTTACGGACTCGTGCAGGCGGGGAGCTGCTGGAACAATAAGT
TCTGTGACGGCATGACGGCGATTGGATTCGAACAGGCAAAGGCGGACCCG
TGCGTCTTCTGCAAGGTCGTTGACGGGGAGGCGGAGATGGTGGTGGTAGT
ACACGTAGACGACATCCTTGCCCACGCCAAAGATCAAGCGACGATGGATA
GATTCGCCGCTGAGCTTGGGCAAAAGTTCAGATTGAAGGACATGGACGAC
GCCGGGTACTGCATGGGCTGTCACATCACAAGGAACCGTAAGGCGCGCGA
GTTGAAGTTCGACCAACACTTGTACGTGGAGTCAATGGTAAGAAAGTTTG
ACGTCAAGAAGACAACTAAGATACCGGCTGCGTCGGGGGTGCCGACGCCC
TCAAAGGCGGATGAACCGCGGAACCCAGAGGAGAAGGAGGAAATGAGGAA
GTTCCCGTGCCGAGTGGCAGTGGGGGCGCTCATGTGGACGGCGACGATGA
CACGACTGGATATTGCGTGCGCCGTACGCGCTGTGGTCAGGTTCTGCGAA
AACCCTGGGACGGCGCATAAGAAGGCAGTGATGAAGATTTTCCAGTATCT
CTTTCACACGAAAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGAC
TTTGCATGGAAGCGTATACGGACTGGGATTGCGGAGCCTGCCTGGACACA
AGACGGTGGGTTTAGATGCACTACACGGAAAAGTACTCGCCCACGCCATC
AACCGCGTCAATCCGGATGCTTTTGGCGATGGCAGCGGCCAAGGACGGAG
AGCTACGCCATTTCGAAGCAGAGCAGGCATTTCTGAAGGCGGATATTGAC
GAAGAAATATACATCGAGATCCCTGAGGAGTTTCAGGAGTTTCCGGGGGC
AGTGGGACGGCTAAACAAGGTCATTTACGGACTCGTGCAGGCGGGGAGCT
GCTGGAACAATAAGTTCTGTGACGGCATGACGGCGATTGGATTCGAACAG
GCAAAGGCGGACCCGTGCGTCTTCTGCAAGGTCGTTGACGGGGAGGCGGA
GATGGTGGTGGTAGTACACGTAGACGACATCCTTGCCCACGCCAAAGATC
AAGCGACGATGGATAGATTCGCCGCTGAGCTTGGGCAAAAGTTCAGATTG
AAGGACATGGACGACGCCGGGTACTGCATGGGCTGTCACATCACAAGGAA
CCGTAAGGCGCGCGAGTTGAAGTTCGACCAACACTTGTACGTGGAGTCAA
TGGTAAGAAAGTTTGACGTCAAGAAGACAACTAAGATACCGGCTGCGTCG
GGGGTGCCGACGCCCTCAAAGGCGGATGAACCGCGGAACCCAGAGGAGAA
GGAGGAAATGAGGAAGTTCCCGTGCCGAGTGGCAGTGGGGGCGCTCATGT
GGACGGCGACGATGACACGACTGGATATTGCGTGCGCCGTACGCGCTGTG
GTCAGGTTCTGCGAAAACCCTGGGACGGCGCATAAGAAGGCAGTGATGAA
GATTTTCCAGTATCTCTTTCACACGAAAGAATGGGGGATTACGTACGGTG
GACAGGGCTGTGGACTTTGCATGGAAGCGTATACGGACTGGGATTGCGGA
GCCTGCCTGGACACAAGACGGTGGGTTTAG
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