mRNA_F-serratus_M_contig749.18729.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig749.18729.1
Unique NamemRNA_F-serratus_M_contig749.18729.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.600e-40
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 3
Query:    3 RVDGSRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVS-PGFSRGKIQHDLSETLSDAIFNVLHLRRD 410
            RV G++L +EGE+T GG F    L +PFRY FSLSAS DGHV++ K  SVYWGT  GGHV LPM+PLQSF IDLGDR++IE LR+S G L++GGRFIL+     TV+ PG  RG I +DL+E+LS  + N L+LRR+
Sbjct:  207 RVHGNKLAIEGEMTNGGTF----LRVPFRYHFSLSASADGHVLYFKGSSVYWGTP-GGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLSRLVSNCLNLRRE 338          
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.560e-40
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 3
Query:    3 RVDGSRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVS-PGFSRGKIQHDLSETLSDAIFNVLHLRRD 410
            RV G++L +EGE+T GG F    L +PFRY FSLSAS+DGHV++ K  SVYWGT  GGHV LPM+PLQSF IDLGDR++IE LR+S G L+VGGRFIL+     TV+ PG  RG I +DL+E LS  + N L+LRR+
Sbjct:  298 RVHGNKLAIEGEMTNGGTF----LRVPFRYHFSLSASQDGHVLYFKGSSVYWGTP-GGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLSRLVSNCLNLRRE 429          
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.320e-16
Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 3
Query:   15 SRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVSPGFSRGKIQHDLSETLSDAIFNVL 395
            SRLV+EGE+           ++PF Y  S+     GHVV+LKD  V+W   GG  ++LP+LPL++F++D+G+ ++IE +R+  G++ +  R ++SP  PL V+    R   + D++E LS    N++
Sbjct:  382 SRLVIEGEMAYDSA------KVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGS-LSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFGNLV 501          
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.760e-16
Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 3
Query:   15 SRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVSPGFSRGKIQHDLSETLSDAIFNVL 395
            SRLV+EGE+           ++PF Y  S+     GHVV+LKD  V+W   GG  ++LP+LPL++F++D+G+ ++IE +R+  G++ +  R ++SP  PL V+    R   + D++E LS    N++
Sbjct:  641 SRLVIEGEMAYDSA------KVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGS-LSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVRKRAAFRFDVAERLSVTFGNLV 760          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB91_ECTSI1.600e-4059.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9J0_9PHAE5.560e-4059.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8F0_ECTSI1.320e-1636.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8F0_9PHAE1.760e-1636.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig749contigF-serratus_M_contig749:230451..236301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004760.1
Exons3
Model size977
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig749.18729.1prot_F-serratus_M_contig749.18729.1Fucus serratus malepolypeptideF-serratus_M_contig749 230642..235182 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932257.4611943-UTR-F-serratus_M_contig749:230450..2306411622932257.4611943-UTR-F-serratus_M_contig749:230450..230641Fucus serratus maleUTRF-serratus_M_contig749 230451..230641 +
1690964221.7702634-UTR-F-serratus_M_contig749:230450..2306411690964221.7702634-UTR-F-serratus_M_contig749:230450..230641Fucus serratus maleUTRF-serratus_M_contig749 230451..230641 +
1622932257.510699-UTR-F-serratus_M_contig749:235182..2351981622932257.510699-UTR-F-serratus_M_contig749:235182..235198Fucus serratus maleUTRF-serratus_M_contig749 235183..235198 +
1690964221.817552-UTR-F-serratus_M_contig749:235182..2351981690964221.817552-UTR-F-serratus_M_contig749:235182..235198Fucus serratus maleUTRF-serratus_M_contig749 235183..235198 +
1622932257.5312471-UTR-F-serratus_M_contig749:235753..2363011622932257.5312471-UTR-F-serratus_M_contig749:235753..236301Fucus serratus maleUTRF-serratus_M_contig749 235754..236301 +
1690964221.8325548-UTR-F-serratus_M_contig749:235753..2363011690964221.8325548-UTR-F-serratus_M_contig749:235753..236301Fucus serratus maleUTRF-serratus_M_contig749 235754..236301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932257.4747813-CDS-F-serratus_M_contig749:230641..2306821622932257.4747813-CDS-F-serratus_M_contig749:230641..230682Fucus serratus maleCDSF-serratus_M_contig749 230642..230682 +
1690964221.7874806-CDS-F-serratus_M_contig749:230641..2306821690964221.7874806-CDS-F-serratus_M_contig749:230641..230682Fucus serratus maleCDSF-serratus_M_contig749 230642..230682 +
1622932257.488721-CDS-F-serratus_M_contig749:235001..2351821622932257.488721-CDS-F-serratus_M_contig749:235001..235182Fucus serratus maleCDSF-serratus_M_contig749 235002..235182 +
1690964221.801246-CDS-F-serratus_M_contig749:235001..2351821690964221.801246-CDS-F-serratus_M_contig749:235001..235182Fucus serratus maleCDSF-serratus_M_contig749 235002..235182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig749.18729.1

>prot_F-serratus_M_contig749.18729.1 ID=prot_F-serratus_M_contig749.18729.1|Name=mRNA_F-serratus_M_contig749.18729.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVSPGFSRG
KIQHDLSETLSDAIFNVLHLRRD*
back to top

mRNA from alignment at F-serratus_M_contig749:230451..236301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig749.18729.1 ID=mRNA_F-serratus_M_contig749.18729.1|Name=mRNA_F-serratus_M_contig749.18729.1|organism=Fucus serratus male|type=mRNA|length=5851bp|location=Sequence derived from alignment at F-serratus_M_contig749:230451..236301+ (Fucus serratus male)
TGCGGGTGGACGGAAGCAGGCTGGTGGTTGAGGGGGAGGTGACGACCGGA GGACGCTTCTTTGGACCTTTCCTCGAGTTGCCGTTCCGGTATGAGTTTTC CCTGAGCGCGTCTCGCGACGGACACGTGGTGCACCTGAAGGATCCTAGCG TCTACTGGGGCACGGCCGGCGGCGGGCACGTAGCCCTCCCGATGCTGCCG TTGCAGTCGTTCAACATTGACCTTGGCGACAGGTGGGTATGCGATGGTCC TTACGCTGCATTCTTCATATATATTTTTTACTATTAATAGTACTTTGTAG TTCGTATTTAAAAAAAATGCGACTCAAAATGGGGGCCGGGAGGGGTCGGG TGGCAATGTACGATCCACGCCAGGGTTATCGTGTGGCCTCGGAAGGGACG AGTGGGCCGAAGGCAGTCTTTGAGCTTGTTTGGAGGCTTGAACCGCAAGA CGAAATCATATTCTTCTTGTTATGTGCATGGAATGACAGGAGACATGTAA AATCACCAAGAACAACACCTCCCCTTATTTACCTCGAGAAGCATGGCCAA TCAGTGCCCTACTTCCTTCAGCAAAATACGAGGCGATGAAATACTTTTGA TGAACAAATAAAATAAAATAAAAGGCTTATTCCTCTTTTATTCCCTGTGG TTTCGAGTCTATATTTAGATATAAATATACCGATATATCGACAAGTCACC AACGACATTTACGACATTTCGGGGGTGCTGCAGCATGATTGGATGTCCCA GCGTTGACAGGTCTTACACAGTATAGTCGTGATGTGGGATGGGTAGATGC AGACTTGACGTGATTACATAGCACACACCAATTAAAAACCGATATTGAAT AAATTAGGAGCTGCCCTGGACCCTAAATAAAAGGAAATATTAAATTGAAT TCCCTGGGTAATAATGTAGTAAGTGTAGCGGACTCCGATACTGACGTTCC TCGTCAAAAGTATAATATAGCCGCATGTGACCATACATCTAGTAACATTC TCATTACCCTTACTCGATGATTGGCCAACACTAAACTTACCAAATTTACC AACTGTAACGCCCTCCCTACTTTTTGGACGCAGCATTCAAAGCTCCAAAT TATTCACGCACGAAAGAAAATTATACTGGGACTCATTATACTCAAATCTT ACTCGGCATACTTCACTACCAATCCTTCAACGGAATTTTTTCCTCAAGTT TATCAAAAATTTTGGGTCGGAGGTGAACACATCATATGCTATGTGTTATT CAAACCATTGGAAATGTTATGTGAATTTCGCATTAGAGGTAAGGTATCCC CAACAACACATTGCAGCCTTGATTCCACCGAAACGTTTTGACATTTTTTT CCTCCTGACTGGGGGATGCTCAGAAGGTATAGGCGCGTTCTGATTTTTCT TTGAACATGTTTCCTATACAGCATAAGATGCAAGACTTTGGCAGGTCACG TGTTTGATGTGCAGCAATTCACCAAATACTAGTTGATAGGTCCCATGTCA GATGCGCGGGCCACTCATCCATTGATCAATGTCATCAATGCCCATCGTAA CATAATGGTTACTGCAGAGTTATTCTTTGCGCATCAGACGGTTAGATGGA CACTGGATTCCTTTCGAACAAACAAAATGTAATTATGAAAAGCAGATAAA TTTTAAACGAATTGTCTCGAATACAGTAGGTCTAGAAACACCTACGACCC CAATACAGGTTTAAAATAATGTCATAACAACGTCACTCCGCTATTATCTT GTTTTTTTGTTTGCTTTTTGTTTGTATCTCACTTACGGCCGATGGGCCTC AACTTCCTAGGTTACCAATTCTACCTACTGCAACGTTGCCATCCTGCCTG TGGTCACAAAGGGTCTTCCCATATCTCTCCTGTTCTTTGCTTTACTTTTT TATCGCGATGCAAATTCAGCACTCTTACAACTCGTTCACCAATGGTCGAG AATTGAACTCACGACATTCGCACTAGCAGGTTTACATCGTTATCCACTAG ACCACTTGGCTACTTAAAGGGAAATCCGCGTGGATTCAAACAGAGCAGCC TACGGTCCTTTTTCGAGATTCATACTATACTTCAAAGTAGCCTTGATAAC AAGTGACAATAGTGGGCGGATCTGAGATTCGCGCATAAACACCACCCATG ATACAATCAAACGTGTATGAAATTACACAGTTGGTAACAATTTCAGGTAG GGATATTTGCGATTAAATGCCATAAAAAGGTTTTGTTTTTGCAGCCTACG ATCCCACCTAGACGTTTTGACATTTTTCCTCTGGGCTGGGAAAGCCCAGA AAGTCTAGATGCGTTTAGATTTTTCTTTAAAAGCCTGTCGGATAGACCGA AAAGTTCAGCTTACTTCAGCTGTACTAATATTGTATTGTATATTAGTTCA GCCTACGAAAAGTCGATACAGACTTTGATCCAAGTCAGGGAACAATAAAA TCACAAGAGTCGAAGGAGGAATACCTCATAGCGCCATGTGCACCCGCACT TGAGACTCACTCGCTCTGTTTTCCCAAGGTTTCGCTCTATTCTGTAACAC TGTCGGAAAAAGTACAAAATTGGTCATTTTCTGCTGCAGTTTCAAAGAAA ATTTCTAGTGCAGCATTATCCCAGCTTGAACTTGACCAACTGAACATGCA CCAAGCCATAGTGCTTTGATAGCTGCAAGAAACTGAAATTGCACTACTAC TTTAATATAAGCTCTACTACTGGTAGTTTGCTGCAACCAACCTATACCCC ACCCTGTCGTAAAAGAAGCAAACCGAGATTACGATCTTCATACGGTTATT GAGCAGGAAGCTGCTCTTGATCAGCTTGGTCTCTGTAACTTGCTCTTCAT CGATCGGGTTGGCGCATAGCTTTCGATTTTTCCATGAAAATTTCGGTAGG AGGTTTCACCTGTAATCACTGAGAACAAAACGCGGCAGAGAATAGCTCAC CTCCCTCCAACATAGTAGATAGCAGCCGCTACTCGGCTTGCGGCGCGTCA CGTCGCCATCCGCCGGGGTCGAACTGTTTGTGTTTTGACCTGTCCATCTC AACCTCTCCATACAGCCAGTCCATTTGTAAAGTCTCAATTTTGCGAAGGG CGACTAATTTTCTTATCTCATCAGGTTTCATCCTGACAACTTCTTGAGGA GAGATGATGCTGTCCTTCTGTTCTGAGGCTCTACCGTCGGCGTGCCTACC GCTGTCGATGGTTGATGGTTGCATCTGCCTGCATGAGAGACGTGATTGTT CAGATGCTTCTACACCCATACCAGCTGATGGCGATTAGACCAGAATACAC TTTCTTTTGGGCTTCCTATTTCACTTGATCTTATACTCCCTGCCAGCCGG TGCTTCGAGCGAATTTCGTCCTTGCTCGTTGTGGTCACTTTTTGTAAACT TAGAAGCAAAACACGGCTGCTGTGGTGGTGATCGTGCAAACAATCGTCCC GGGGGCAAATTATGGCGGCAAGATTCCCTGCCTTGTTAGCCGGTTTAACT CTGTCCACAGATTTTCGGTGTGTTCTTTTCGAAGGGGTGGCAGCTGTGGT TGAAAAGCTGCTTCGAGATTGCAATATTAAGGATCATCTATATAGTACAT ACATACACCCCCTAACCTGCGCTGTCTCTCCACCCATATATCTCTCCTAC CGAAACTATTGGTTCGTTGCCAAGCTGCATGCATTTCTTACTCTCGGAGA CTGTACACAGTTGCTCTATTCTGTGGGATGCGACTATTTTCTTCACCGGT ATAACTTGTGCACACACTGACAAAGTGCGGCTAACTCTTCTTGCATTGTG GTAACCTCTTCCTCGATGAATTACATTTTCACGAAGGTATCACAACGTAA GAACGGAGCGTGCACAACTCGAGATCGTGAAAATCCGATCCTTCAGGATT GCTTCCATTTTTGGGCCAGCGTCCCAACTAGCGCTGGCACCGATGTTGGC GCTGGTGCTGACGCTCCCACTTAAGCTCTCTGAACTGATGTTGTCCTCCT TCCATTTAAGCAGGGGACTCTTAGCCCTCAGTCCGACATCTCCATAGCGC TGCTGTATTATAAGAAGAAACTAACAAAAACTCAAAACTGTCGACCCACA AAACAACCTCCAACGTAGGCCTAGTTCGAGGTAATCCGTAGTACCCAGCG TTGGCAGGTCTCACACGGGAGAGTGGTGCTGTGTGTGGGATAGATGCAGG CTTGAGGTGGTCACGTAACAGACACCAATGTAGAATCGATATATTATTAT AGCGAGCAACCGGAACGCAATAGTACAACCTTATAAGACACAACACACCG ATTCAAGTTGAAGCTCTGCACCTTGAATCGGAAGAAAATACTGGTATTAA ACTAATAATTCTCCTCAGTAATATAATAATTCGACTCCAATACTGATGTT CCTCATAACGAGTATAATCCATCCGCTTGTGACCAGGCATGTAGTAAAAT ATCACAGCATACTGGTACAATCTACCAATTTGTAATCATGTACGGCACAG GTGTAAATTCGCTATTTTCTCGTGGGCTCTGTTCAACTCTGCACGACACA GGTCTAAGATCGAGCTTTTGAGGGTGTCCGGGGGGCGTCTGACAGTTGGC GGGAGGTTTATTCTGTCTCCTGTGTCCCCGCTTACGGTCTCGCCGGGGTT CAGCCGGGGGAAAATCCAACACGACCTCTCGGAAACCCTAAGCGATGCCA TCTTCAACGTTTTACATCTGAGGCGGGATTAGACTAACCGCCAAAAAAGT GAGATGCAGTATTATTATAGTATATTTCGGTATTATAGTAGTAATATCAA TGTTTGTACAGGTTCTGGAGCTCTAGTGTTGGAGCTCGACTGGTTTACTC GTGTTGACATTTGTATTTGAGTCGAGCAATGACTGTAATGTGCCGCTGTC CATCGTCGGTCTTGGTGCCCGCGCGTGGGGCCATATTTGATATGAGGGTA CTGGAAGGCTGCGCATGGAGCTAGAGGGGCTTTGGTTGCTGCTTCTACCG GCATATAGTGTCCTTATCCTTTGATGCACATACACCGTGTGCATTCATGC ATCGAACTGCGCTAGCAAGGAGTTGATTTACTGTGAACATTTTCCTGATA CTGGAGATATAATCGTAGAGGGAGAGGAGTGCTGCTGGGGAGGTGACGGT CGTTTCCATTTTTTGTGTTGTCCATGGATACGATAGCCCAAACGTTTCCC TTTGAGGCGATATAAGCAGATGCGGCAATACTTTTTCATGGAATCGACTC TGTAAAACTGACCTGTATAGGACTGACTCACGCTTGGGTAAAACGTTCTG CAGGTCAGCGTGCCATTTTGCGACGATGGTATTGCTGAACATGTGCCCTT TTTGCTGGAATTTGAGGGGTGGTTGTGTTATCAGCGTCATCAGCGGGGTG GCGGGAGCAGCATGCGAGAATGGATCGTTCGGGGCACTCCTGGTTTGTCG ATTTTGACGGTTGTACGGCAGTAGAGAGACGAGAGGCACGCACGATTTTT GCTAGTAATCTTGAGTGTACAGGAATGGTTCTACTGTAGTAGTGGTATGC CTTGTCGATGTCGAGAAGAGGGTATACTTTTGTTATTTCATTACCATTAC AAGGGTGTATCGTTTTGGTCAGACACGGTATCTGTCCGTTTCAACGGTCT TGGTCTATCCCTATACGTAGATCAGAGTAAACCAAAGAATGATACGTCTT AATTTTACTCTAGAAGGCAATGTAGGTATAATTTTAATAGTCAATCAAGA GCGATCCAAAGTACGTGTGTTTATCGACGTCGGTTTCCGTGTTTTTTGTT TTTGTTTTATCTGTGCCTGCCCCCGTTACTCCGTAGAATCGAGCTTGCTC T
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig749:230451..236301+

>mRNA_F-serratus_M_contig749.18729.1 ID=mRNA_F-serratus_M_contig749.18729.1|Name=mRNA_F-serratus_M_contig749.18729.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig749:230451..236301+ (Fucus serratus male)
ATGCTGCCGTTGCAGTCGTTCAACATTGACCTTGGCGACAGATGCTGCCG
TTGCAGTCGTTCAACATTGACCTTGGCGACAGGTCTAAGATCGAGCTTTT
GAGGGTGTCCGGGGGGCGTCTGACAGTTGGCGGGAGGTTTATTCTGTCTC
CTGTGTCCCCGCTTACGGTCTCGCCGGGGTTCAGCCGGGGGAAAATCCAA
CACGACCTCTCGGAAACCCTAAGCGATGCCATCTTCAACGTTTTACATCT
GAGGCGGGATTAGGTCTAAGATCGAGCTTTTGAGGGTGTCCGGGGGGCGT
CTGACAGTTGGCGGGAGGTTTATTCTGTCTCCTGTGTCCCCGCTTACGGT
CTCGCCGGGGTTCAGCCGGGGGAAAATCCAACACGACCTCTCGGAAACCC
TAAGCGATGCCATCTTCAACGTTTTACATCTGAGGCGGGATTAG
back to top