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Homology
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: D8LB91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB91_ECTSI) HSP 1 Score: 154 bits (388), Expect = 1.600e-40 Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 3
Query: 3 RVDGSRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVS-PGFSRGKIQHDLSETLSDAIFNVLHLRRD 410
RV G++L +EGE+T GG F L +PFRY FSLSAS DGHV++ K SVYWGT GGHV LPM+PLQSF IDLGDR++IE LR+S G L++GGRFIL+ TV+ PG RG I +DL+E+LS + N L+LRR+
Sbjct: 207 RVHGNKLAIEGEMTNGGTF----LRVPFRYHFSLSASADGHVLYFKGSSVYWGTP-GGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSLGGRFILTNTPGFTVALPGLKRGDINYDLAESLSRLVSNCLNLRRE 338
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: A0A6H5K9J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J0_9PHAE) HSP 1 Score: 154 bits (390), Expect = 5.560e-40 Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 3
Query: 3 RVDGSRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVS-PGFSRGKIQHDLSETLSDAIFNVLHLRRD 410
RV G++L +EGE+T GG F L +PFRY FSLSAS+DGHV++ K SVYWGT GGHV LPM+PLQSF IDLGDR++IE LR+S G L+VGGRFIL+ TV+ PG RG I +DL+E LS + N L+LRR+
Sbjct: 298 RVHGNKLAIEGEMTNGGTF----LRVPFRYHFSLSASQDGHVLYFKGSSVYWGTP-GGHVPLPMMPLQSFKIDLGDRARIEHLRISRGVLSVGGRFILTNTPGFTVALPGLKRGDINYDLAEGLSRLVSNCLNLRRE 429
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: D7G8F0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F0_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.320e-16 Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 3
Query: 15 SRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVSPGFSRGKIQHDLSETLSDAIFNVL 395
SRLV+EGE+ ++PF Y S+ GHVV+LKD V+W GG ++LP+LPL++F++D+G+ ++IE +R+ G++ + R ++SP PL V+ R + D++E LS N++
Sbjct: 382 SRLVIEGEMAYDSA------KVPFTYRTSIGVKGKGHVVYLKDAEVFWENVGGS-LSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASLRKRAAFRFDVAERLSVTFGNLV 501
BLAST of mRNA_F-serratus_M_contig749.18729.1 vs. uniprot
Match: A0A6H5K8F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8F0_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.760e-16 Identity = 46/127 (36.22%), Postives = 77/127 (60.63%), Query Frame = 3
Query: 15 SRLVVEGEVTTGGRFFGPFLELPFRYEFSLSASRDGHVVHLKDPSVYWGTAGGGHVALPMLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVSPGFSRGKIQHDLSETLSDAIFNVL 395
SRLV+EGE+ ++PF Y S+ GHVV+LKD V+W GG ++LP+LPL++F++D+G+ ++IE +R+ G++ + R ++SP PL V+ R + D++E LS N++
Sbjct: 641 SRLVIEGEMAYDSA------KVPFTYRTSIGVKGKGHVVYLKDAEVFWENIGGS-LSLPLLPLETFDVDMGEGARIESIRIVNGQVALKARVVISPFPPLLVASVRKRAAFRFDVAERLSVTFGNLV 760
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_004760.1 |
| Exons | 3 |
| Model size | 977 |
| Cds size | 222 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932257.4611943-UTR-F-serratus_M_contig749:230450..230641 | 1622932257.4611943-UTR-F-serratus_M_contig749:230450..230641 | Fucus serratus male | UTR | F-serratus_M_contig749 230451..230641 + |
| 1690964221.7702634-UTR-F-serratus_M_contig749:230450..230641 | 1690964221.7702634-UTR-F-serratus_M_contig749:230450..230641 | Fucus serratus male | UTR | F-serratus_M_contig749 230451..230641 + |
| 1622932257.510699-UTR-F-serratus_M_contig749:235182..235198 | 1622932257.510699-UTR-F-serratus_M_contig749:235182..235198 | Fucus serratus male | UTR | F-serratus_M_contig749 235183..235198 + |
| 1690964221.817552-UTR-F-serratus_M_contig749:235182..235198 | 1690964221.817552-UTR-F-serratus_M_contig749:235182..235198 | Fucus serratus male | UTR | F-serratus_M_contig749 235183..235198 + |
| 1622932257.5312471-UTR-F-serratus_M_contig749:235753..236301 | 1622932257.5312471-UTR-F-serratus_M_contig749:235753..236301 | Fucus serratus male | UTR | F-serratus_M_contig749 235754..236301 + |
| 1690964221.8325548-UTR-F-serratus_M_contig749:235753..236301 | 1690964221.8325548-UTR-F-serratus_M_contig749:235753..236301 | Fucus serratus male | UTR | F-serratus_M_contig749 235754..236301 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932257.4747813-CDS-F-serratus_M_contig749:230641..230682 | 1622932257.4747813-CDS-F-serratus_M_contig749:230641..230682 | Fucus serratus male | CDS | F-serratus_M_contig749 230642..230682 + |
| 1690964221.7874806-CDS-F-serratus_M_contig749:230641..230682 | 1690964221.7874806-CDS-F-serratus_M_contig749:230641..230682 | Fucus serratus male | CDS | F-serratus_M_contig749 230642..230682 + |
| 1622932257.488721-CDS-F-serratus_M_contig749:235001..235182 | 1622932257.488721-CDS-F-serratus_M_contig749:235001..235182 | Fucus serratus male | CDS | F-serratus_M_contig749 235002..235182 + |
| 1690964221.801246-CDS-F-serratus_M_contig749:235001..235182 | 1690964221.801246-CDS-F-serratus_M_contig749:235001..235182 | Fucus serratus male | CDS | F-serratus_M_contig749 235002..235182 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig749.18729.1 >prot_F-serratus_M_contig749.18729.1 ID=prot_F-serratus_M_contig749.18729.1|Name=mRNA_F-serratus_M_contig749.18729.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MLPLQSFNIDLGDRSKIELLRVSGGRLTVGGRFILSPVSPLTVSPGFSRG KIQHDLSETLSDAIFNVLHLRRD* back to topmRNA from alignment at F-serratus_M_contig749:230451..236301+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig749.18729.1 ID=mRNA_F-serratus_M_contig749.18729.1|Name=mRNA_F-serratus_M_contig749.18729.1|organism=Fucus serratus male|type=mRNA|length=5851bp|location=Sequence derived from alignment at F-serratus_M_contig749:230451..236301+ (Fucus serratus male) TGCGGGTGGACGGAAGCAGGCTGGTGGTTGAGGGGGAGGTGACGACCGGA
GGACGCTTCTTTGGACCTTTCCTCGAGTTGCCGTTCCGGTATGAGTTTTC
CCTGAGCGCGTCTCGCGACGGACACGTGGTGCACCTGAAGGATCCTAGCG
TCTACTGGGGCACGGCCGGCGGCGGGCACGTAGCCCTCCCGATGCTGCCG
TTGCAGTCGTTCAACATTGACCTTGGCGACAGGTGGGTATGCGATGGTCC
TTACGCTGCATTCTTCATATATATTTTTTACTATTAATAGTACTTTGTAG
TTCGTATTTAAAAAAAATGCGACTCAAAATGGGGGCCGGGAGGGGTCGGG
TGGCAATGTACGATCCACGCCAGGGTTATCGTGTGGCCTCGGAAGGGACG
AGTGGGCCGAAGGCAGTCTTTGAGCTTGTTTGGAGGCTTGAACCGCAAGA
CGAAATCATATTCTTCTTGTTATGTGCATGGAATGACAGGAGACATGTAA
AATCACCAAGAACAACACCTCCCCTTATTTACCTCGAGAAGCATGGCCAA
TCAGTGCCCTACTTCCTTCAGCAAAATACGAGGCGATGAAATACTTTTGA
TGAACAAATAAAATAAAATAAAAGGCTTATTCCTCTTTTATTCCCTGTGG
TTTCGAGTCTATATTTAGATATAAATATACCGATATATCGACAAGTCACC
AACGACATTTACGACATTTCGGGGGTGCTGCAGCATGATTGGATGTCCCA
GCGTTGACAGGTCTTACACAGTATAGTCGTGATGTGGGATGGGTAGATGC
AGACTTGACGTGATTACATAGCACACACCAATTAAAAACCGATATTGAAT
AAATTAGGAGCTGCCCTGGACCCTAAATAAAAGGAAATATTAAATTGAAT
TCCCTGGGTAATAATGTAGTAAGTGTAGCGGACTCCGATACTGACGTTCC
TCGTCAAAAGTATAATATAGCCGCATGTGACCATACATCTAGTAACATTC
TCATTACCCTTACTCGATGATTGGCCAACACTAAACTTACCAAATTTACC
AACTGTAACGCCCTCCCTACTTTTTGGACGCAGCATTCAAAGCTCCAAAT
TATTCACGCACGAAAGAAAATTATACTGGGACTCATTATACTCAAATCTT
ACTCGGCATACTTCACTACCAATCCTTCAACGGAATTTTTTCCTCAAGTT
TATCAAAAATTTTGGGTCGGAGGTGAACACATCATATGCTATGTGTTATT
CAAACCATTGGAAATGTTATGTGAATTTCGCATTAGAGGTAAGGTATCCC
CAACAACACATTGCAGCCTTGATTCCACCGAAACGTTTTGACATTTTTTT
CCTCCTGACTGGGGGATGCTCAGAAGGTATAGGCGCGTTCTGATTTTTCT
TTGAACATGTTTCCTATACAGCATAAGATGCAAGACTTTGGCAGGTCACG
TGTTTGATGTGCAGCAATTCACCAAATACTAGTTGATAGGTCCCATGTCA
GATGCGCGGGCCACTCATCCATTGATCAATGTCATCAATGCCCATCGTAA
CATAATGGTTACTGCAGAGTTATTCTTTGCGCATCAGACGGTTAGATGGA
CACTGGATTCCTTTCGAACAAACAAAATGTAATTATGAAAAGCAGATAAA
TTTTAAACGAATTGTCTCGAATACAGTAGGTCTAGAAACACCTACGACCC
CAATACAGGTTTAAAATAATGTCATAACAACGTCACTCCGCTATTATCTT
GTTTTTTTGTTTGCTTTTTGTTTGTATCTCACTTACGGCCGATGGGCCTC
AACTTCCTAGGTTACCAATTCTACCTACTGCAACGTTGCCATCCTGCCTG
TGGTCACAAAGGGTCTTCCCATATCTCTCCTGTTCTTTGCTTTACTTTTT
TATCGCGATGCAAATTCAGCACTCTTACAACTCGTTCACCAATGGTCGAG
AATTGAACTCACGACATTCGCACTAGCAGGTTTACATCGTTATCCACTAG
ACCACTTGGCTACTTAAAGGGAAATCCGCGTGGATTCAAACAGAGCAGCC
TACGGTCCTTTTTCGAGATTCATACTATACTTCAAAGTAGCCTTGATAAC
AAGTGACAATAGTGGGCGGATCTGAGATTCGCGCATAAACACCACCCATG
ATACAATCAAACGTGTATGAAATTACACAGTTGGTAACAATTTCAGGTAG
GGATATTTGCGATTAAATGCCATAAAAAGGTTTTGTTTTTGCAGCCTACG
ATCCCACCTAGACGTTTTGACATTTTTCCTCTGGGCTGGGAAAGCCCAGA
AAGTCTAGATGCGTTTAGATTTTTCTTTAAAAGCCTGTCGGATAGACCGA
AAAGTTCAGCTTACTTCAGCTGTACTAATATTGTATTGTATATTAGTTCA
GCCTACGAAAAGTCGATACAGACTTTGATCCAAGTCAGGGAACAATAAAA
TCACAAGAGTCGAAGGAGGAATACCTCATAGCGCCATGTGCACCCGCACT
TGAGACTCACTCGCTCTGTTTTCCCAAGGTTTCGCTCTATTCTGTAACAC
TGTCGGAAAAAGTACAAAATTGGTCATTTTCTGCTGCAGTTTCAAAGAAA
ATTTCTAGTGCAGCATTATCCCAGCTTGAACTTGACCAACTGAACATGCA
CCAAGCCATAGTGCTTTGATAGCTGCAAGAAACTGAAATTGCACTACTAC
TTTAATATAAGCTCTACTACTGGTAGTTTGCTGCAACCAACCTATACCCC
ACCCTGTCGTAAAAGAAGCAAACCGAGATTACGATCTTCATACGGTTATT
GAGCAGGAAGCTGCTCTTGATCAGCTTGGTCTCTGTAACTTGCTCTTCAT
CGATCGGGTTGGCGCATAGCTTTCGATTTTTCCATGAAAATTTCGGTAGG
AGGTTTCACCTGTAATCACTGAGAACAAAACGCGGCAGAGAATAGCTCAC
CTCCCTCCAACATAGTAGATAGCAGCCGCTACTCGGCTTGCGGCGCGTCA
CGTCGCCATCCGCCGGGGTCGAACTGTTTGTGTTTTGACCTGTCCATCTC
AACCTCTCCATACAGCCAGTCCATTTGTAAAGTCTCAATTTTGCGAAGGG
CGACTAATTTTCTTATCTCATCAGGTTTCATCCTGACAACTTCTTGAGGA
GAGATGATGCTGTCCTTCTGTTCTGAGGCTCTACCGTCGGCGTGCCTACC
GCTGTCGATGGTTGATGGTTGCATCTGCCTGCATGAGAGACGTGATTGTT
CAGATGCTTCTACACCCATACCAGCTGATGGCGATTAGACCAGAATACAC
TTTCTTTTGGGCTTCCTATTTCACTTGATCTTATACTCCCTGCCAGCCGG
TGCTTCGAGCGAATTTCGTCCTTGCTCGTTGTGGTCACTTTTTGTAAACT
TAGAAGCAAAACACGGCTGCTGTGGTGGTGATCGTGCAAACAATCGTCCC
GGGGGCAAATTATGGCGGCAAGATTCCCTGCCTTGTTAGCCGGTTTAACT
CTGTCCACAGATTTTCGGTGTGTTCTTTTCGAAGGGGTGGCAGCTGTGGT
TGAAAAGCTGCTTCGAGATTGCAATATTAAGGATCATCTATATAGTACAT
ACATACACCCCCTAACCTGCGCTGTCTCTCCACCCATATATCTCTCCTAC
CGAAACTATTGGTTCGTTGCCAAGCTGCATGCATTTCTTACTCTCGGAGA
CTGTACACAGTTGCTCTATTCTGTGGGATGCGACTATTTTCTTCACCGGT
ATAACTTGTGCACACACTGACAAAGTGCGGCTAACTCTTCTTGCATTGTG
GTAACCTCTTCCTCGATGAATTACATTTTCACGAAGGTATCACAACGTAA
GAACGGAGCGTGCACAACTCGAGATCGTGAAAATCCGATCCTTCAGGATT
GCTTCCATTTTTGGGCCAGCGTCCCAACTAGCGCTGGCACCGATGTTGGC
GCTGGTGCTGACGCTCCCACTTAAGCTCTCTGAACTGATGTTGTCCTCCT
TCCATTTAAGCAGGGGACTCTTAGCCCTCAGTCCGACATCTCCATAGCGC
TGCTGTATTATAAGAAGAAACTAACAAAAACTCAAAACTGTCGACCCACA
AAACAACCTCCAACGTAGGCCTAGTTCGAGGTAATCCGTAGTACCCAGCG
TTGGCAGGTCTCACACGGGAGAGTGGTGCTGTGTGTGGGATAGATGCAGG
CTTGAGGTGGTCACGTAACAGACACCAATGTAGAATCGATATATTATTAT
AGCGAGCAACCGGAACGCAATAGTACAACCTTATAAGACACAACACACCG
ATTCAAGTTGAAGCTCTGCACCTTGAATCGGAAGAAAATACTGGTATTAA
ACTAATAATTCTCCTCAGTAATATAATAATTCGACTCCAATACTGATGTT
CCTCATAACGAGTATAATCCATCCGCTTGTGACCAGGCATGTAGTAAAAT
ATCACAGCATACTGGTACAATCTACCAATTTGTAATCATGTACGGCACAG
GTGTAAATTCGCTATTTTCTCGTGGGCTCTGTTCAACTCTGCACGACACA
GGTCTAAGATCGAGCTTTTGAGGGTGTCCGGGGGGCGTCTGACAGTTGGC
GGGAGGTTTATTCTGTCTCCTGTGTCCCCGCTTACGGTCTCGCCGGGGTT
CAGCCGGGGGAAAATCCAACACGACCTCTCGGAAACCCTAAGCGATGCCA
TCTTCAACGTTTTACATCTGAGGCGGGATTAGACTAACCGCCAAAAAAGT
GAGATGCAGTATTATTATAGTATATTTCGGTATTATAGTAGTAATATCAA
TGTTTGTACAGGTTCTGGAGCTCTAGTGTTGGAGCTCGACTGGTTTACTC
GTGTTGACATTTGTATTTGAGTCGAGCAATGACTGTAATGTGCCGCTGTC
CATCGTCGGTCTTGGTGCCCGCGCGTGGGGCCATATTTGATATGAGGGTA
CTGGAAGGCTGCGCATGGAGCTAGAGGGGCTTTGGTTGCTGCTTCTACCG
GCATATAGTGTCCTTATCCTTTGATGCACATACACCGTGTGCATTCATGC
ATCGAACTGCGCTAGCAAGGAGTTGATTTACTGTGAACATTTTCCTGATA
CTGGAGATATAATCGTAGAGGGAGAGGAGTGCTGCTGGGGAGGTGACGGT
CGTTTCCATTTTTTGTGTTGTCCATGGATACGATAGCCCAAACGTTTCCC
TTTGAGGCGATATAAGCAGATGCGGCAATACTTTTTCATGGAATCGACTC
TGTAAAACTGACCTGTATAGGACTGACTCACGCTTGGGTAAAACGTTCTG
CAGGTCAGCGTGCCATTTTGCGACGATGGTATTGCTGAACATGTGCCCTT
TTTGCTGGAATTTGAGGGGTGGTTGTGTTATCAGCGTCATCAGCGGGGTG
GCGGGAGCAGCATGCGAGAATGGATCGTTCGGGGCACTCCTGGTTTGTCG
ATTTTGACGGTTGTACGGCAGTAGAGAGACGAGAGGCACGCACGATTTTT
GCTAGTAATCTTGAGTGTACAGGAATGGTTCTACTGTAGTAGTGGTATGC
CTTGTCGATGTCGAGAAGAGGGTATACTTTTGTTATTTCATTACCATTAC
AAGGGTGTATCGTTTTGGTCAGACACGGTATCTGTCCGTTTCAACGGTCT
TGGTCTATCCCTATACGTAGATCAGAGTAAACCAAAGAATGATACGTCTT
AATTTTACTCTAGAAGGCAATGTAGGTATAATTTTAATAGTCAATCAAGA
GCGATCCAAAGTACGTGTGTTTATCGACGTCGGTTTCCGTGTTTTTTGTT
TTTGTTTTATCTGTGCCTGCCCCCGTTACTCCGTAGAATCGAGCTTGCTC
T back to topCoding sequence (CDS) from alignment at F-serratus_M_contig749:230451..236301+ >mRNA_F-serratus_M_contig749.18729.1 ID=mRNA_F-serratus_M_contig749.18729.1|Name=mRNA_F-serratus_M_contig749.18729.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig749:230451..236301+ (Fucus serratus male) ATGCTGCCGTTGCAGTCGTTCAACATTGACCTTGGCGACAGATGCTGCCG TTGCAGTCGTTCAACATTGACCTTGGCGACAGGTCTAAGATCGAGCTTTT GAGGGTGTCCGGGGGGCGTCTGACAGTTGGCGGGAGGTTTATTCTGTCTC CTGTGTCCCCGCTTACGGTCTCGCCGGGGTTCAGCCGGGGGAAAATCCAA CACGACCTCTCGGAAACCCTAAGCGATGCCATCTTCAACGTTTTACATCT GAGGCGGGATTAGGTCTAAGATCGAGCTTTTGAGGGTGTCCGGGGGGCGT CTGACAGTTGGCGGGAGGTTTATTCTGTCTCCTGTGTCCCCGCTTACGGT CTCGCCGGGGTTCAGCCGGGGGAAAATCCAACACGACCTCTCGGAAACCC TAAGCGATGCCATCTTCAACGTTTTACATCTGAGGCGGGATTAG back to top
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