mRNA_F-serratus_M_contig741.18673.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig741.18673.1
Unique NamemRNA_F-serratus_M_contig741.18673.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 244 bits (623), Expect = 3.100e-70
Identity = 145/386 (37.56%), Postives = 217/386 (56.22%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDSPNQ--VGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSIDQQR-----------YAQTVTERFEIRKTSAILVPTGKAP-LSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            IG K VFK K    G++E+YK R VAKGF Q +G+ Y+E  SP  ++ S R+ +A++A  D +  Q DV+ AFL  D+TE++Y+  PDG++ S  +  V +L+K+ YG+  A   W  KF   + + GF+ +  D C++  K  G  ++ +V+YVDD+L+ +       +    L  +F +KDLGE S+ LG  I + R           Y   V ERF +   +A   P  K   LSK   PQ+D E  EM+ I Y  AVG+LM+    TRPD A+    L +F  +PG +HW+A  K L+YL+RT    +TY   ++ +++  + DAD+A C D  +S SG   ML G AISW    Q + A++T ++EYVA  E   +  +LR
Sbjct:  322 IGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDLELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR-RSDLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVACYEATLQAVWLR 705          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A4Q3DG62_9RICK (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DG62_9RICK)

HSP 1 Score: 240 bits (613), Expect = 5.950e-70
Identity = 143/387 (36.95%), Postives = 212/387 (54.78%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGY--RDSPNQVGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSIDQQR-----------YAQTVTERFEIRKTSAILVP--TGKAPLSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            IG K ++KRK G DG+VE +K R VAKGF Q +GI Y E  SP     SIR+ LA+ A  D++ WQ DV+ AFL   + EE+Y+  PDG+  +   ++V +L K+ YG+  A   W+++F   +   GFE + ++PCV+  K+  KVVV +V+YVDD+L++    +      E L   F +KDLG  ++ LG  I + R           Y   V  RF ++    +L+P  +GK  LSK   P+   E+ +M  + Y  AVG+LM+    TRPD  Y    ++++  NPG EHW AV   L+YLKRT  + + Y   + D+ +  + D+D  +  D  +S SG    L G AI W    Q   A +T E+EY+A  E   E  +L+
Sbjct:  177 IGCKWIYKRKKGADGQVETFKARLVAKGFTQREGIDYDETFSPVAMFKSIRILLAIAAHYDYEIWQMDVKTAFLNGYLEEEIYMAQPDGFIEKGQEHKVCKLLKSIYGLKQASRSWNQRFDEVIKTYGFEQNLSEPCVY--KYSKKVVVFLVLYVDDILLIGSDIKVMSDIKEWLAKQFQMKDLGNAAFVLGIQIIRDRKNKLLALSQGTYIDKVLSRFSMQNAHGVLLPIRSGKF-LSKEQCPKTPQEVEDMSRVPYASAVGSLMYAMLCTRPDICYAVGVVSRYQSNPGQEHWIAVKHILKYLKRTRDMMLVY--TSNDLVIQGYTDSDFQADRDMLKSTSGSVFTLNGGAIVWRSIKQSSIADSTMEAEYIAASEAAKEAVWLK 558          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 245 bits (625), Expect = 7.560e-69
Identity = 146/386 (37.82%), Postives = 218/386 (56.48%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDSPNQ--VGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSIDQQR-----------YAQTVTERFEIRKTSAILVPTGKAP-LSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            IG K VFK K    G++E+YK R VAKGF Q +GI Y+E  SP  ++ S R+ +A++A  D++  Q DV+ AFL  D+TE++Y+  P+G++ S  +  V +L+K+ YG+  A   W  KF   + + GF+ +  D C++  K  G  ++ +V+YVDD+L+ +       +    L  +F +KDLGE S+ LG  I + R           Y   V ERF +   SA   P  K   LSK   PQ+D E  EM+ I Y  AVG+LM+    TRPD A+    L +F  +PG +HW+A  K L+YL+RT    +TY   ++ +++  + DAD+A C D  +S SG   ML G AISW    Q + A++T ++EYVA  E   +  +LR
Sbjct:  524 IGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGIDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPNGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCSAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYR-RSDLLEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVACYEATLQAVWLR 907          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 243 bits (619), Expect = 2.740e-68
Identity = 144/386 (37.31%), Postives = 217/386 (56.22%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDSPNQ--VGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSIDQQR-----------YAQTVTERFEIRKTSAILVPTGKAP-LSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            IG K VFK K    G++E+YK R VAKGF Q +G+ Y+E  SP  ++ S R+ +A++A  D++  Q DV+ AFL  D+TE++Y+  PDG++ S  +  V +L+K+ YG+  A   W  KF   + + GF+ +  D C++  K  G  ++ +V+YVDD+L+ +       +    L  +F +KDLGE S+ LG  I + R           Y   V ERF +   +A   P  K   LSK   PQ+D E  EM+ I Y  AVG+LM+    TRPD A+    L +F  +P  +HW+A  K L+YL+RT    +TY  + + +++  + DAD+A C D  +S SG   ML G AISW    Q + A++T ++EYVA  E   +  +LR
Sbjct:  680 IGCKWVFKTKKDSTGKIERYKARLVAKGFSQKEGVDYKETFSPVSSKDSFRIVMALVAHFDFELHQMDVKTAFLNGDLTEDVYMLQPDGFQVSGKEHMVCKLKKSIYGLKQASRQWYLKFDNVVTSFGFKENPVDHCIYL-KISGSKIIFLVLYVDDILLASNDLGLLRETKRFLFDNFEMKDLGEASFVLGIEIHRDRSRGILGLSQKSYISRVLERFNMSTCAAGDAPVVKGDKLSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTYRHS-DLLEVVGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVACYEATLQAVWLR 1063          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 232 bits (591), Expect = 4.230e-68
Identity = 139/384 (36.20%), Postives = 213/384 (55.47%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDSPNQVGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGC-----------SIDQQRYAQTVTERFEIRKTSAILVPTGKA-PLSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            I TK VF +K  + G + ++K R VA GF Q+ G+ + E  +   +  SIR+ L+V     +   Q DV+ AFL AD+ E++Y+E P+G +   ++V +L KA YG+  AG  W K   G LI  GF+   +D C++  +  G     I +YVDD++V   T+    +  + + + F IK+LG + + LG            SI+Q  Y +T+ ERF  +    +  P  ++  LSKADGP+DD + AEM    YR  +G L +VA  TRPD A+    L++F +NPG  HW A ++ L+YLK T   G++YGG  E+     + DAD  +  D RRSVSG  +M+ G  I +  + Q   A ++SE+EY+AL     E+ ++R
Sbjct:   38 IKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGR-AGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVR 420          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A015J5I9_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J5I9_RHIIW)

HSP 1 Score: 241 bits (615), Expect = 1.380e-67
Identity = 138/386 (35.75%), Postives = 211/386 (54.66%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDS--PNQVGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSIDQQR-----------YAQTVTERFEIRKTSAILVPT-GKAPLSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            +G K +FK+K   DG+V  +K R VAKGF Q  G+ Y E  SP     SIR+ LA+ A  D++ WQ DV+ AFL   +TE++Y+  P+G+ D+  PN+V +L+++ YG+  A   W+  F  ++   GF  S+ + CV+  K  G +V  +V+YVDD+L++             L   F +KDLGE +Y LG  I + R           Y + V +RF +  +    +P    A LSK   P  D EIAEM  + Y  AVG++M+    TRPD A+    ++++  NPG  HW AV   L+YL+RT ++ +  GG+ + +++  + DA   +  D+ RS SG   +L G A++W    Q   A +T ESEY+A  E   E  +L+
Sbjct:  822 VGCKWIFKKKTDMDGKVHTFKARLVAKGFTQTPGVDYDETFSPVAKIKSIRIMLAIAAFHDYEIWQMDVKTAFLNGKLTEDVYMNQPEGFVDAKYPNKVCKLERSIYGLKQASRSWNLCFHEKVKEFGFSRSEDESCVYV-KASGSIVTFLVLYVDDILLMGNDIPTLQDVKAWLGKCFAMKDLGEAAYILGIRILRDRKKRLIGLSQGTYLEKVLKRFSMENSKKGELPIQSNAKLSKTQSPSTDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKYLRRTKNMVLVLGGS-DTLRVEGYTDASFQTDRDSGRSQSGWVFLLNGGAVTWKSSKQETVADSTCESEYIAASEASKEAAWLK 1205          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A535FA79_9CHLR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FA79_9CHLR)

HSP 1 Score: 224 bits (572), Expect = 1.120e-66
Identity = 128/381 (33.60%), Postives = 204/381 (53.54%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGY--RDSPNQVGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSI-----------DQQRYAQTVTERFEIRKTSAILVPTGKAP-LSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNE 1101
            +G K ++KRK+  DG V  YK R VAKG+ Q  GI +++  SP     SIR+ LA+ A  D++ WQ DV+ AFL  ++ EE+Y+E P G+    S ++V RL ++ YG+  A   W+ +F   +   GF  +  +PCV+ +      V  I+VYVDD+L++   K++   + E L S F +KDLGE ++ LG  I            Q +Y   + +RF +  +    +P      LSK+  PQ D E  +M  I Y  A+G++M+    TRPD A+     +++  +PG  HW A    L+YL++T  L + YG   +++ +  + D+   S  D  +S SG   ++ G A++W    Q   A +T+E+EY+A  E   E
Sbjct:    3 VGCKWLYKRKLDADGNVATYKARLVAKGYTQRPGIDFEDTFSPVAMPKSIRILLAIAAYYDYEIWQMDVKTAFLNGNIKEEIYMEQPMGFISSGSADKVCRLNRSIYGLKQASRSWNIRFDEAVKGYGFVKNTYEPCVYTKTSTD-AVEFIIVYVDDILLIGNNKEEMTSSKEWLSSQFSMKDLGEANFVLGIKIFRDRTNRLLGLSQAQYIDKIVKRFNLENSKRGYLPERHGVVLSKSQSPQTDEERRKMERIPYASAMGSIMYAMLCTRPDVAHALGVASRYQSDPGEAHWGAAKTILKYLRKTRDLFLVYGA--KELVIEGFTDSSFQSDVDDFKSTSGYVFLINGGAVTWRSCKQATVADSTTEAEYIAASEAAKE 380          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A5A7QRB1_STRAF (Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRB1_STRAF)

HSP 1 Score: 238 bits (608), Expect = 1.180e-66
Identity = 141/386 (36.53%), Postives = 210/386 (54.40%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGY--RDSPNQVGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSI-----------DQQRYAQTVTERFEIRKTSAILVPTGKA-PLSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            IG K ++KRK G DG+V+ +K R VAKG+ QI+GI Y E  SP     SIR+ LAV A +D++ WQ DV+ AFL  ++ E++Y++ P+G+      + V +L ++ YG+  A   W+ +F   + + GF     + CV++ K  G VVV +V+YVDD+L++  +K++       L   F +KDLGE  + LG  +            Q  Y  TV  RF ++ +   ++P     PLSK   P+   EI EM+ + Y  AVG+LM+    TRPD +Y    +A++  NPG EHW AV   L+YL+RT    + Y    + +    + D+D  S  D  +S SG    LG  AISW    Q   A +T E+EY+A  E   E  +LR
Sbjct:  836 IGCKWIYKRKRGLDGKVQTFKARLVAKGYTQIEGIDYDETFSPVAMLKSIRILLAVAAHMDYEVWQMDVKTAFLNGNLQEDIYMQQPEGFIAEGREHLVCKLNRSIYGLKQASRSWNIRFDEVIQSYGFTQCPDEHCVYK-KISGSVVVFLVLYVDDILLIGNSKKELSDVKVWLSKQFDMKDLGEAGHILGIRLIRDRKKRMLCLSQSSYIDTVLARFSMQDSKKGMLPFRHGIPLSKEMSPKTSKEIEEMKTVPYASAVGSLMYAMLCTRPDISYAVGMVARYQSNPGREHWSAVKHILKYLRRTKEYMLVY--RADSLLPLGYSDSDFQSDRDESKSTSGYVFTLGSGAISWRSAKQKCVADSTMEAEYIAASEAAKEAVWLR 1218          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: UPI001F00A048 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F00A048)

HSP 1 Score: 238 bits (607), Expect = 1.270e-66
Identity = 143/385 (37.14%), Postives = 209/385 (54.29%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDS-PNQVGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGCSI-----------DQQRYAQTVTERFEIRKTSAILVPTGKA-PLSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            +  K VFK K     +V KYK R V KGF Q KGI + E  SP     SIR+ L ++A ++ +  Q DV+ AFL   + EE+Y+E P+G+  S  N V +L+K+ YG+  A   W KKF   + ++G++ + AD CV+ +K      V +++YVDD+L++ +  +  +Q  ++L  SF +KDLG     LG  I            Q++Y + V  RF +     + +P      LSK   P    EI EM  + Y  AVG+LM+    TRPD A+    +++F  NPG EHW+AV   L+YLK T  L + YGGA  D  L  + DAD A   D+R+S SG      G A+SW  R Q   A +T+E+EY+A  E   E+ +L+
Sbjct:  690 LKNKWVFKLKKDGSEKVVKYKARLVVKGFQQKKGIDFDEIFSPVVKMTSIRVILGMVASMNLELEQMDVKTAFLHGGLDEEIYMEQPEGFEVSGDNLVCKLKKSLYGLKQAPRQWYKKFDSCMTSQGYKKTSADECVYIQKFSDGNFVALLLYVDDILIVGKDAKKINQLKKELSKSFDMKDLGPAQQILGMQITRDRKNRRLWLSQEKYIERVLARFNMNNAKPVSIPLANHFKLSKRSCPSSKEEIGEMSSVPYSSAVGSLMYAMVCTRPDIAHAVGKVSRFLSNPGKEHWEAVKWILRYLKGTIKLCLCYGGA--DPILEGYTDADMAGDLDSRKSTSGFIFTFAGGAVSWQSRLQKCVALSTTEAEYIAAAEAGKEMLWLK 1072          
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.030e-66
Identity = 139/387 (35.92%), Postives = 221/387 (57.11%), Query Frame = 1
Query:    1 IGTKTVFKRKVGQDGRVEKYKCRFVAKGFGQIKGIHYQEPSSPTPTQLSIRMALAVMALLDWQGWQHDVEMAFLEADVTEELYVELPDGYRDSPNQ--VGRLQKATYGVMHAGLLWSKKFGGELIAKGFETSQADPCVFRRKHLGKVVVIIVVYVDDLLVLNETKQDEHQALEDL*SSFPIKDLGEISYYLGC-----------SIDQQRYAQTVTERFEIRKTSAILVPTG-KAPLSKADGPQDDTEIAEMRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKALQYLKRTASLGVTYGGATEDMK-LSAWVDADHASCPDTRRSVSGGAVMLGGRAISWFLRAQIIAATATSESEYVALVEIVNELRFLR 1116
            + +K +FK K    G +E+YK R V +G+ QIK I Y+E  +P     S+R+ LA++A+ DW+  Q DV+ AFL  D+ EE+Y+  P+G  ++  +  V +L +A YG+  A   W KK    L +KGF    +D C++ R   G  V II +YVDDLL++ +T     +    L + F  KD+G + + LG            SIDQ  YA+ V E+F + + +    P      LSK + P+++ E A+M+   YR  VG+LM++   +RPD A+    ++K+ ++PG  HW A  + L+Y+K T   G+   G +   K L+A+VD+D+A   DTRRSVSG  + +G  AI++  ++Q   A +++E+EY++L   V E+ FLR
Sbjct:   85 LTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEVYMIQPEGLEEAGKEDLVCQLLQALYGLKQAPRAWHKKLTDYLKSKGFVKLDSDSCIYVRTG-GSGVAIIGIYVDDLLLIADTASRIQEMKSMLSAGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQLNPCKTPCDPNVILSKENCPKNEDERAQMKNKDYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGLAHWNAAKRILRYVKGTIGYGLVIDGRSRTGKQLTAFVDSDYAKDIDTRRSVSGYVMQMGDCAITYSCKSQRTVALSSTEAEYMSLAHGVKEMLFLR 470          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig741.18673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GV19_FAGSY3.100e-7037.56Integrase catalytic domain-containing protein n=6 ... [more]
A0A4Q3DG62_9RICK5.950e-7036.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HDZ1_FAGSY7.560e-6937.82RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A2N9EBY4_FAGSY2.740e-6837.31Integrase catalytic domain-containing protein n=4 ... [more]
A0A8K1CTN1_PYTOL4.230e-6836.20Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A015J5I9_RHIIW1.380e-6735.75Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
A0A535FA79_9CHLR1.120e-6633.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5A7QRB1_STRAF1.180e-6636.53Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=... [more]
UPI001F00A0481.270e-6637.14DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A225WDK2_9STRA2.030e-6635.92Integrase, catalytic core protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig741contigF-serratus_M_contig741:97520..98635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score109.8
Seed ortholog evalue1e-21
Seed eggNOG ortholog221103.XP_007845407.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs22D21@155619,39QKZ@33154,3Q6Q9@4751,3V7VH@5204,3WA55@5338,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
Exons1
Model size1116
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.083806-UTR-F-serratus_M_contig741:97519..982301622932247.083806-UTR-F-serratus_M_contig741:97519..98230Fucus serratus maleUTRF-serratus_M_contig741 97520..98230 +
1690964216.8016725-UTR-F-serratus_M_contig741:97519..982301690964216.8016725-UTR-F-serratus_M_contig741:97519..98230Fucus serratus maleUTRF-serratus_M_contig741 97520..98230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.1246502-CDS-F-serratus_M_contig741:98230..986351622932247.1246502-CDS-F-serratus_M_contig741:98230..98635Fucus serratus maleCDSF-serratus_M_contig741 98231..98635 +
1690964216.814742-CDS-F-serratus_M_contig741:98230..986351690964216.814742-CDS-F-serratus_M_contig741:98230..98635Fucus serratus maleCDSF-serratus_M_contig741 98231..98635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig741.18673.1prot_F-serratus_M_contig741.18673.1Fucus serratus malepolypeptideF-serratus_M_contig741 98231..98635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig741.18673.1

>prot_F-serratus_M_contig741.18673.1 ID=prot_F-serratus_M_contig741.18673.1|Name=mRNA_F-serratus_M_contig741.18673.1|organism=Fucus serratus male|type=polypeptide|length=135bp
MRGITYREAVGALMWVANMTRPDSAYTAHTLAKFGDNPGHEHWKAVMKAL
QYLKRTASLGVTYGGATEDMKLSAWVDADHASCPDTRRSVSGGAVMLGGR
AISWFLRAQIIAATATSESEYVALVEIVNELRFLR
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mRNA from alignment at F-serratus_M_contig741:97520..98635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig741.18673.1 ID=mRNA_F-serratus_M_contig741.18673.1|Name=mRNA_F-serratus_M_contig741.18673.1|organism=Fucus serratus male|type=mRNA|length=1116bp|location=Sequence derived from alignment at F-serratus_M_contig741:97520..98635+ (Fucus serratus male)
ATCGGTACCAAGACCGTTTTTAAACGAAAGGTCGGCCAGGATGGCCGTGT AGAAAAATACAAGTGCCGCTTCGTGGCCAAAGGTTTCGGCCAGATCAAAG GGATTCATTACCAAGAGCCATCGTCGCCGACACCTACACAGTTGAGCATT CGGATGGCGCTGGCGGTGATGGCCCTGTTGGACTGGCAGGGGTGGCAACA TGACGTAGAAATGGCGTTTCTCGAGGCGGATGTTACTGAGGAGCTCTACG TTGAGCTACCCGACGGGTATCGCGACTCGCCGAACCAGGTTGGACGACTG CAGAAGGCCACGTATGGCGTGATGCACGCCGGACTACTGTGGTCGAAAAA GTTTGGCGGAGAGTTGATAGCGAAGGGATTCGAGACGTCCCAAGCCGATC CCTGCGTGTTCCGGCGGAAGCACCTGGGGAAGGTCGTCGTCATCATTGTG GTCTACGTTGACGATCTACTAGTGCTGAATGAAACGAAGCAGGACGAGCA TCAGGCGCTGGAAGACCTTTGATCCAGCTTTCCCATCAAGGATCTAGGAG AGATCTCGTACTACCTGGGATGTTCGATCGATCAGCAGCGTTACGCGCAG ACGGTAACCGAGCGATTCGAAATTCGGAAGACCAGCGCGATCCTTGTTCC TACGGGGAAAGCGCCACTTTCGAAGGCAGACGGGCCGCAAGACGACACTG AGATCGCAGAAATGCGTGGCATCACGTATCGCGAGGCAGTGGGGGCACTA ATGTGGGTAGCGAACATGACTCGGCCTGACTCAGCTTACACCGCGCACAC GCTCGCCAAGTTCGGTGACAACCCCGGGCACGAGCACTGGAAGGCAGTAA TGAAAGCGCTACAGTACCTGAAACGAACGGCAAGCCTAGGGGTAACATAT GGAGGCGCGACGGAGGATATGAAACTATCGGCATGGGTGGACGCCGATCA CGCATCATGCCCTGATACGCGCCGTTCGGTATCGGGGGGCGCGGTGATGC TCGGTGGACGGGCAATCAGTTGGTTTTTGCGGGCGCAGATAATAGCCGCG ACAGCGACGTCCGAATCGGAGTACGTAGCACTGGTGGAGATTGTGAATGA GCTACGTTTCCTTCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig741:97520..98635+

>mRNA_F-serratus_M_contig741.18673.1 ID=mRNA_F-serratus_M_contig741.18673.1|Name=mRNA_F-serratus_M_contig741.18673.1|organism=Fucus serratus male|type=CDS|length=810bp|location=Sequence derived from alignment at F-serratus_M_contig741:97520..98635+ (Fucus serratus male)
ATGCGTGGCATCACGTATCGCGAGGCAGTGGGGGCACTAATGTGGGTAGC
GAACATGACTCGGCCTGACTCAGCTTACACCGCGCACACGCTCGCCAAGT
TCGGTGACAACCCCGGGCACGAGCACTGGAAGGCAGTAATGAAAGCGCTA
CAGTACCTGAAACGAACGGCAAGCCTAGGGGTAACATATGGAGGCGCGAC
GGAGGATATGAAACTATCGGCATGGGTGGACGCCGATCACGCATCATGCC
CTGATACGCGCCGTTCGGTATCGGGGGGCGCGGTGATGCTCGGTGGACGG
GCAATCAGTTGGTTTTTGCGGGCGCAGATAATAGCCGCGACAGCGACGTC
CGAATCGGAGTACGTAGCACTGGTGGAGATTGTGAATGAGCTACGTTTCC
TTCGGATGCGTGGCATCACGTATCGCGAGGCAGTGGGGGCACTAATGTGG
GTAGCGAACATGACTCGGCCTGACTCAGCTTACACCGCGCACACGCTCGC
CAAGTTCGGTGACAACCCCGGGCACGAGCACTGGAAGGCAGTAATGAAAG
CGCTACAGTACCTGAAACGAACGGCAAGCCTAGGGGTAACATATGGAGGC
GCGACGGAGGATATGAAACTATCGGCATGGGTGGACGCCGATCACGCATC
ATGCCCTGATACGCGCCGTTCGGTATCGGGGGGCGCGGTGATGCTCGGTG
GACGGGCAATCAGTTGGTTTTTGCGGGCGCAGATAATAGCCGCGACAGCG
ACGTCCGAATCGGAGTACGTAGCACTGGTGGAGATTGTGAATGAGCTACG
TTTCCTTCGG
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