mRNA_F-serratus_M_contig7294.18513.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7294.18513.1
Unique NamemRNA_F-serratus_M_contig7294.18513.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 79.3 bits (194), Expect = 1.430e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            E+L  V+  +YD+V RP+D+ V+G K +++ K G DG+IEKYK R+VA+GF QVEGV YT+ ++P    ASIR
Sbjct:  304 ELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIR 376          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 79.0 bits (193), Expect = 1.980e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            EAE+    +  V+++V RP+D+ +IG+K ++K K G DG++EKYK RLVAQGF QVEG+ Y E ++P   + SIR
Sbjct: 1015 EAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIR 1089          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-14
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            EML  V+  ++D+V  PK++ V+G+K +++ K G +GKIEKYK RLVAQGF QV+G+ YTE ++P     SIR
Sbjct:   16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIR 88          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-14
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            E+L   +   YD+V RP+++ V+G K +++ K G DG +E+YK RLVAQGF QVEG+ Y+E ++P    ASIR
Sbjct:  952 ELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIR 1024          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-13
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            E E+  +  N  +D V RP+ + V+  K ++KRK+ +DG++E+YK RLVA+G+ QVEG+ Y E +SP     SIR
Sbjct:   51 EEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIR 125          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: UPI0015ADBDF9 (uncharacterized protein LOC118188897 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADBDF9)

HSP 1 Score: 70.5 bits (171), Expect = 4.740e-13
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            E E+  +  N  +D V RP+ + V+  K ++KRK+ +DG++E+YK RLVA+G+ QVEG+ Y E +SP     SIR
Sbjct:    2 EKELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIR 76          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 70.9 bits (172), Expect = 1.390e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            EM  + EN  +D V  PK+K V+G + ++  K+G DGKI++YK RLVAQG+ Q  G+ Y E ++P     SIR
Sbjct:  871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIR 943          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 67.8 bits (164), Expect = 2.390e-12
Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            E EM  +  N VYD V  PK+K VIG+K +++RKI  DG +E+YK RLVAQ F Q  G+ Y E +       SIR
Sbjct:   26 EREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDETFCRVVCFESIR 100          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A0J7K7I2_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7I2_LASNI)

HSP 1 Score: 70.1 bits (170), Expect = 2.510e-12
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            E+  +++N  ++   RP D +VIG++M+ + K+G D K+E+ K RLVAQGF+Q  GVH++E ++P     SIR
Sbjct:    4 ELRSIIKNDTWELDERPDDSIVIGSRMVLRNKLGPDNKLERRKARLVAQGFYQQPGVHFSETFAPVARLGSIR 76          
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A1X1QSJ2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. M TaxID=1840537 RepID=A0A1X1QSJ2_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 3.530e-12
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
            +AEM  + +N V++ V  PKD+  +G+K ++K K  +DG +E YK RLVAQGF QV+G  Y E + P     S+R
Sbjct:    2 KAEMRLLQDNDVWELVELPKDRKNVGSKWVFKVKTNEDGDVEHYKARLVAQGFMQVKGADYDEMFCPVVRLESLR 76          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1C7MSU6_GRIFR1.430e-1552.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK1.980e-1549.33Integrase catalytic domain-containing protein (Fra... [more]
A0A2R6NNP3_9APHY1.220e-1450.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SUY4_PYCCI3.270e-1447.95Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
UPI0015A81C6A1.300e-1344.00uncharacterized mitochondrial protein AtMg00820-li... [more]
UPI0015ADBDF94.740e-1344.00uncharacterized protein LOC118188897 n=1 Tax=Stego... [more]
A0A151T5R4_CAJCA1.390e-1245.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7VXK3_AMPQE2.390e-1248.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7K7I2_LASNI2.510e-1242.47Retrovirus-related pol polyprotein from transposon... [more]
A0A1X1QSJ2_9GAMM3.530e-1244.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7294contigF-serratus_M_contig7294:8004..8228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog2711.XP_006493639.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LRR receptor-like serine threonine-protein kinase
EggNOG OGs37Y8N@33090,3GXD3@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.8860505-CDS-F-serratus_M_contig7294:8003..82191622932215.8860505-CDS-F-serratus_M_contig7294:8003..8219Fucus serratus maleCDSF-serratus_M_contig7294 8004..8219 -
1690964202.600256-CDS-F-serratus_M_contig7294:8003..82191690964202.600256-CDS-F-serratus_M_contig7294:8003..8219Fucus serratus maleCDSF-serratus_M_contig7294 8004..8219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.9048114-UTR-F-serratus_M_contig7294:8219..82281622932215.9048114-UTR-F-serratus_M_contig7294:8219..8228Fucus serratus maleUTRF-serratus_M_contig7294 8220..8228 -
1690964202.6152308-UTR-F-serratus_M_contig7294:8219..82281690964202.6152308-UTR-F-serratus_M_contig7294:8219..8228Fucus serratus maleUTRF-serratus_M_contig7294 8220..8228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7294.18513.1prot_F-serratus_M_contig7294.18513.1Fucus serratus malepolypeptideF-serratus_M_contig7294 8004..8219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7294.18513.1

>prot_F-serratus_M_contig7294.18513.1 ID=prot_F-serratus_M_contig7294.18513.1|Name=mRNA_F-serratus_M_contig7294.18513.1|organism=Fucus serratus male|type=polypeptide|length=72bp
MLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGF
WQVEGVHYTEKYSPTPSAASIR
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mRNA from alignment at F-serratus_M_contig7294:8004..8228-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7294.18513.1 ID=mRNA_F-serratus_M_contig7294.18513.1|Name=mRNA_F-serratus_M_contig7294.18513.1|organism=Fucus serratus male|type=mRNA|length=225bp|location=Sequence derived from alignment at F-serratus_M_contig7294:8004..8228- (Fucus serratus male)
GAGGCTGAGATGCTTGGAATGGTCGAGAACTGCGTTTATGATCAGGTGGC TCGGCCAAAGGATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAA AAATCGGGCAGGACGGCAAGATCGAGAAGTACAAGTGTCGACTTGTCGCT CAAGGGTTCTGGCAGGTAGAAGGTGTGCACTACACGGAAAAGTACTCGCC CACGCCATCAGCTGCGTCAATCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7294:8004..8228-

>mRNA_F-serratus_M_contig7294.18513.1 ID=mRNA_F-serratus_M_contig7294.18513.1|Name=mRNA_F-serratus_M_contig7294.18513.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig7294:8004..8228- (Fucus serratus male)
ATGCTTGGAATGGTCGAGAACTGCGTTTATGATCAGGTGGCTCGGCCAAA
GGATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGC
AGGACGGCAAGATCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTC
TGGCAGGTAGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACGCCATC
AGCTGCGTCAATCCGGATGCTTGGAATGGTCGAGAACTGCGTTTATGATC
AGGTGGCTCGGCCAAAGGATAAGCTCGTGATCGGCACGAAAATGTTGTAC
AAGCGAAAAATCGGGCAGGACGGCAAGATCGAGAAGTACAAGTGTCGACT
TGTCGCTCAAGGGTTCTGGCAGGTAGAAGGTGTGCACTACACGGAAAAGT
ACTCGCCCACGCCATCAGCTGCGTCAATCCGG
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