mRNA_F-serratus_M_contig7294.18513.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 79.3 bits (194), Expect = 1.430e-15 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
E+L V+ +YD+V RP+D+ V+G K +++ K G DG+IEKYK R+VA+GF QVEGV YT+ ++P ASIR
Sbjct: 304 ELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIR 376
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 79.0 bits (193), Expect = 1.980e-15 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
EAE+ + V+++V RP+D+ +IG+K ++K K G DG++EKYK RLVAQGF QVEG+ Y E ++P + SIR
Sbjct: 1015 EAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIR 1089
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 76.6 bits (187), Expect = 1.220e-14 Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
EML V+ ++D+V PK++ V+G+K +++ K G +GKIEKYK RLVAQGF QV+G+ YTE ++P SIR
Sbjct: 16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIR 88
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI) HSP 1 Score: 75.5 bits (184), Expect = 3.270e-14 Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
E+L + YD+V RP+++ V+G K +++ K G DG +E+YK RLVAQGF QVEG+ Y+E ++P ASIR
Sbjct: 952 ELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIR 1024
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-13 Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
E E+ + N +D V RP+ + V+ K ++KRK+ +DG++E+YK RLVA+G+ QVEG+ Y E +SP SIR
Sbjct: 51 EEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIR 125
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: UPI0015ADBDF9 (uncharacterized protein LOC118188897 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADBDF9) HSP 1 Score: 70.5 bits (171), Expect = 4.740e-13 Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
E E+ + N +D V RP+ + V+ K ++KRK+ +DG++E+YK RLVA+G+ QVEG+ Y E +SP SIR
Sbjct: 2 EKELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIR 76
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 70.9 bits (172), Expect = 1.390e-12 Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
EM + EN +D V PK+K V+G + ++ K+G DGKI++YK RLVAQG+ Q G+ Y E ++P SIR
Sbjct: 871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIR 943
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 67.8 bits (164), Expect = 2.390e-12 Identity = 36/75 (48.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
E EM + N VYD V PK+K VIG+K +++RKI DG +E+YK RLVAQ F Q G+ Y E + SIR
Sbjct: 26 EREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGLDYDETFCRVVCFESIR 100
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A0J7K7I2_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7I2_LASNI) HSP 1 Score: 70.1 bits (170), Expect = 2.510e-12 Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 7 EMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
E+ +++N ++ RP D +VIG++M+ + K+G D K+E+ K RLVAQGF+Q GVH++E ++P SIR
Sbjct: 4 ELRSIIKNDTWELDERPDDSIVIGSRMVLRNKLGPDNKLERRKARLVAQGFYQQPGVHFSETFAPVARLGSIR 76
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Match: A0A1X1QSJ2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cycloclasticus sp. symbiont of Poecilosclerida sp. M TaxID=1840537 RepID=A0A1X1QSJ2_9GAMM) HSP 1 Score: 66.6 bits (161), Expect = 3.530e-12 Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 EAEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIR 225
+AEM + +N V++ V PKD+ +G+K ++K K +DG +E YK RLVAQGF QV+G Y E + P S+R
Sbjct: 2 KAEMRLLQDNDVWELVELPKDRKNVGSKWVFKVKTNEDGDVEHYKARLVAQGFMQVKGADYDEMFCPVVRLESLR 76 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7294.18513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7294.18513.1 >prot_F-serratus_M_contig7294.18513.1 ID=prot_F-serratus_M_contig7294.18513.1|Name=mRNA_F-serratus_M_contig7294.18513.1|organism=Fucus serratus male|type=polypeptide|length=72bp MLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKIEKYKCRLVAQGFback to top mRNA from alignment at F-serratus_M_contig7294:8004..8228- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7294.18513.1 ID=mRNA_F-serratus_M_contig7294.18513.1|Name=mRNA_F-serratus_M_contig7294.18513.1|organism=Fucus serratus male|type=mRNA|length=225bp|location=Sequence derived from alignment at F-serratus_M_contig7294:8004..8228- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7294:8004..8228- >mRNA_F-serratus_M_contig7294.18513.1 ID=mRNA_F-serratus_M_contig7294.18513.1|Name=mRNA_F-serratus_M_contig7294.18513.1|organism=Fucus serratus male|type=CDS|length=432bp|location=Sequence derived from alignment at F-serratus_M_contig7294:8004..8228- (Fucus serratus male)back to top |