mRNA_F-serratus_M_contig7.18161.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: D7FJ97_ECTSI (Thylakoid lumenal protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ97_ECTSI) HSP 1 Score: 209 bits (531), Expect = 2.430e-61 Identity = 154/186 (82.80%), Postives = 163/186 (87.63%), Query Frame = 3
Query: 279 ALANIVAGVAVLLAGSGAVLADGSTQKFSLPPISNAKDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
AL +AG AVL +G A LADGST KFSLPP+ KDRC+FKSSAMGQANAARDKLYDLR+CD+SG SAAGFDLSGVIASEA+FSKGDFKEVVMSKAYAR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TEAYMG+FDQ+NLCKNPTLKGTNPVT ADTR S GC
Sbjct: 11 ALGTFLAGAAVLFSGGEAALADGSTTKFSLPPVGQGKDRCLFKSSAMGQANAARDKLYDLRECDMSGKSAAGFDLSGVIASEANFSKGDFKEVVMSKAYARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAYMGDFDQKNLCKNPTLKGTNPVTNADTRASAGC 196
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A836CB03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB03_9STRA) HSP 1 Score: 174 bits (442), Expect = 8.490e-48 Identity = 144/208 (69.23%), Postives = 168/208 (80.77%), Query Frame = 3
Query: 216 LPSCLLMSTNGADHFGADTTRALANIVAGVAVLLAGSGAVLADGSTQKFSLPPIS-NAKDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
+ S ++ + GA F +R +A ++AG++ LL G+ LADGST KF+LPPI+ + KDRC FKSS+MGQANAAR+KL+DLR CD+SG SAA DLSGVIASEA+FSK DFKE +SKAYARNS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FTEA MG+FD ++LCKNPTLKG NPVT A T+ES GC
Sbjct: 29 ITSVMMKAEGGASPF----SRTVAAVLAGIS-LLGGAELALADGSTGKFALPPINYSEKDRCTFKSSSMGQANAAREKLFDLRMCDMSGKSAALSDLSGVIASEANFSKVDFKEAQLSKAYARNSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTEAAMGDFDLKSLCKNPTLKGENPVTGAPTKESAGC 231
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A448ZE67_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZE67_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.380e-41 Identity = 143/226 (63.27%), Postives = 164/226 (72.57%), Query Frame = 3
Query: 183 TATT---VNRASLRLPSCLLMSTNGADHFGADTTR----ALANIVAGVAVLLAGSGAVLADGSTQKFSLPPIS-NAKDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
TATT V+R R P+ L +T D + T ALA+I + +++L AG ADG T+KF LPP+ K RC KSS++GQANAARDKLYDLRQC LSG SA GFDLSGVI +E D SK +F++ V SK Y R+SN+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TEA +G FD +NLCKNPTLKG NP T DTR SVGC
Sbjct: 13 TATTEAFVSRNIERTPTLSLQATKNHDRESENATTFANVALASIFS-LSLLSAGPLPAFADGQTEKFKLPPVDLTDKTRCTLKSSSIGQANAARDKLYDLRQCKLSGESAVGFDLSGVIMTETDVSKVNFQDAVFSKGYLRDSNFEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAAIGNFDLKNLCKNPTLKGENPTTGEDTRFSVGC 237
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A7S4A906_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A906_9STRA) HSP 1 Score: 151 bits (381), Expect = 7.350e-39 Identity = 138/226 (61.06%), Postives = 163/226 (72.12%), Query Frame = 3
Query: 183 TATT---VNRASLRLPSCLLMSTNGADHFGADTTR----ALANIVAGVAVLLAGSGAVLADGSTQKFSLPPISNA-KDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
TATT V+R R + L ST D T+ ALA+I + +++L AG ADG T+KF LPP+ A K+RC SS +GQANAARDKLYDLRQC+LSG +A GFDLSGVI + D SK +F++ + SKAY R+SN+E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+ +G FD +NLCKNP+LKG NPVT DTR SVGC
Sbjct: 13 TATTEAFVSRNVERTSTLSLQSTKNHDRESDKVTKFANVALASIFS-LSLLSAGPLPAFADGQTEKFKLPPVDLADKNRCTLSSSTIGQANAARDKLYDLRQCNLSGKAAVGFDLSGVIMTGTDVSKVNFQDAIFSKAYLRDSNFEGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESALGNFDLKNLCKNPSLKGENPVTGEDTRLSVGC 237
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A4D9D0Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Q4_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.210e-38 Identity = 119/168 (70.83%), Postives = 134/168 (79.76%), Query Frame = 3
Query: 336 LADGSTQKFSLPPISNA-KDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
+ADG+T +F LPP+ K RC FKSS MGQANAARDKLYDLR CD+SG A GFDLSG I +E F K +FKE V+SKAYA+ ++ XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+ YMGEF+ R LCKNPTLKGTNPVT+A T+ES GC
Sbjct: 78 IADGATSRFVLPPVDTKDKGRCQFKSSNMGQANAARDKLYDLRLCDMSGKDATGFDLSGAIMAEGTFKKVNFKEAVLSKAYAKAADXXXXXXXXXXXXRVSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTYMGEFNLRELCKNPTLKGTNPVTQAPTKESAGC 245
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A7S0LGG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGG3_9EUKA) HSP 1 Score: 149 bits (377), Expect = 1.570e-38 Identity = 123/170 (72.35%), Postives = 137/170 (80.59%), Query Frame = 3
Query: 330 AVLADGSTQKFSLPPISNAK-DRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
A+ ADG F PPI +K DRC F SAMGQANAARDKLYDLR+C +SG SAA D+SG + ++ DFSK DFKE +SK YA + ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAY+G+FDQR LCKNPTLKG NPVT A TRES GC
Sbjct: 50 AIAADGDIT-FKFPPIDRSKKDRCTFSGSAMGQANAARDKLYDLRECKMSGASAASLDISGALMAQGDFSKADFKEAQLSKVYAPGAVFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYVGQFDQRKLCKNPTLKGENPVTGAGTRESAGC 218
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A7S1H2G8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2G8_9STRA) HSP 1 Score: 147 bits (371), Expect = 6.440e-38 Identity = 124/178 (69.66%), Postives = 137/178 (76.97%), Query Frame = 3
Query: 306 AVLLAGSGAVLADGSTQKFSLPPIS-NAKDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
AV+L+ ADG T++F LPPI K RC SSA+GQANAARDKLYDLR+C LSG A GFDLSGVI ++ D SK DFKE SK Y R+SN++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AY+G+FD RNLCKNPTLKG N VT ADTR S GC
Sbjct: 20 AVILSSPMPSYADGQTKEFKLPPIDFKDKSRCTLSSSAIGQANAARDKLYDLRECKLSGEKATGFDLSGVIMTKTDVSKVDFKEAYFSKGYLRDSNFDGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYIGDFDIRNLCKNPTLKGENSVTGADTRLSAGC 197
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A7S2H4B8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2H4B8_9EUKA) HSP 1 Score: 147 bits (371), Expect = 1.280e-37 Identity = 112/168 (66.67%), Postives = 126/168 (75.00%), Query Frame = 3
Query: 336 LADGSTQKFSLPPISNA-KDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
LADG T++F PPI KDRC F SSAMGQANAARD LYDLR+C +S T+AAGFD+SG + + DFSK DFKE +SK YA + ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FTEAY+G FD R LCKNPTL G NP+T A TR S GC
Sbjct: 55 LADGDTKEFKFPPIDRKNKDRCKFSSSAMGQANAARDSLYDLRECAMSETNAAGFDISGALMANGDFSKVDFKEAQLSKVYAPGAKFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEADLKDADFTEAYIGMFDLRKLCKNPTLDGENPITGAPTRASAGC 222
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A7S3B0S2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B0S2_9EUKA) HSP 1 Score: 145 bits (366), Expect = 7.660e-37 Identity = 120/168 (71.43%), Postives = 131/168 (77.98%), Query Frame = 3
Query: 336 LADGSTQKFSLPPISNA-KDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
LADG T KF PPI N K+RC F SSAMGQANAARD LYDLRQC ++GT A GFD+SG + + DFS +FKE +SK YA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FTEAY+G++DQR LCKNP LKG NP T A TRES GC
Sbjct: 61 LADGDTSKFKFPPIDNTNKNRCQFSSSAMGQANAARDSLYDLRQCSMAGTMAMGFDISGALLAGGDFSGVNFKEAQLSKVYAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTEAYIGDYDQRKLCKNPKLKGENPKTGAPTRESAGC 228
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Match: A0A7S2UM92_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM92_9STRA) HSP 1 Score: 145 bits (367), Expect = 9.530e-37 Identity = 127/193 (65.80%), Postives = 138/193 (71.50%), Query Frame = 3
Query: 261 GADTTRALANIVAGVAVLLAGSGAVLADGSTQKFSLPPIS-NAKDRCVFKSSAMGQANAARDKLYDLRQCDLSGTSAAGFDLSGVIASEADFSKGDFKEVVMSKAYARNSNWENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYMGEFDQRNLCKNPTLKGTNPVTKADTRESVGC 836
GA+T R + L A LADG T+ F LPPI N K RCV SSAMGQANAARDKLYDLRQC+LSG A+GFDLSGVI ++ + S KE SKAY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FT+AY+GE+D RNLCKNPTLKG NPVT DTR S C
Sbjct: 52 GAETFRQAISGAVVALTLFTSPMASLADGQTKDFKLPPIDVNDKTRCVLNSSAMGQANAARDKLYDLRQCNLSGKDASGFDLSGVIMTDTNLSNAKLKEAQFSKAYLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADFTDAYIGEYDIRNLCKNPTLKGENPVTGVDTRFSANC 244 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7.18161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig7.18161.1 >prot_F-serratus_M_contig7.18161.1 ID=prot_F-serratus_M_contig7.18161.1|Name=mRNA_F-serratus_M_contig7.18161.1|organism=Fucus serratus male|type=polypeptide|length=261bp MTVALGALFIASSVVGSAAFLAGGCVFRPSVHSSDRSSPPLTATTVNRASback to top mRNA from alignment at F-serratus_M_contig7:1472993..1483722+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig7.18161.1 ID=mRNA_F-serratus_M_contig7.18161.1|Name=mRNA_F-serratus_M_contig7.18161.1|organism=Fucus serratus male|type=mRNA|length=10730bp|location=Sequence derived from alignment at F-serratus_M_contig7:1472993..1483722+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig7:1472993..1483722+ >mRNA_F-serratus_M_contig7.18161.1 ID=mRNA_F-serratus_M_contig7.18161.1|Name=mRNA_F-serratus_M_contig7.18161.1|organism=Fucus serratus male|type=CDS|length=1566bp|location=Sequence derived from alignment at F-serratus_M_contig7:1472993..1483722+ (Fucus serratus male)back to top |