mRNA_F-serratus_M_contig692.18015.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig692.18015.1
Unique NamemRNA_F-serratus_M_contig692.18015.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP)

HSP 1 Score: 103 bits (258), Expect = 1.380e-23
Identity = 54/109 (49.54%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   31 DEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEPTT  EA    E  +W  A+K EMD      VW  VD PKG   +G K +FK+K   DG V  YK RFVAKGFRQI G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:  396 DEPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYE 504          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI)

HSP 1 Score: 103 bits (258), Expect = 1.830e-23
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 DEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEP T  EA  S E  +W  AL+ EMD      VW  VD PKG   +G K VFK+K+  DG V+ YK R VAKGFRQI G++Y E+ SP     SIR++LA+ A  D+E
Sbjct:  444 DEPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYE 552          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6P523_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P523_9ASTR)

HSP 1 Score: 100 bits (249), Expect = 1.250e-22
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   34 EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            EP T  EA  SSE PQW+ A+K E+D  +    W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL D E
Sbjct:  240 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPSGFKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLMLAIAALRDLE 347          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A401G6E6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G6E6_9APHY)

HSP 1 Score: 100 bits (250), Expect = 2.080e-22
Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   31 DEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            +EP +L+ AK SSEWP+W +A++ E++     G W+ VD P+G+T +G K V  +K  ++G V K+K R VAKG+ QI G+ Y E+ SP     +IR  L + A+LDW+
Sbjct:  230 NEPKSLNNAKNSSEWPKWETAVQAELEQLDNMGTWELVDLPQGRTPVGNKWVLVKKTNREGEVIKFKARLVAKGYSQILGMDYTETYSPVVRLETIRAILGLAAILDWD 338          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR)

HSP 1 Score: 98.6 bits (244), Expect = 3.690e-22
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    4 PTGLASYLPDEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            P  L   +  EP T  +A  SSE PQW+ A+K E+D  +    W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL + E
Sbjct:   60 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLE 177          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 100 bits (248), Expect = 4.040e-22
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    7 TGLASYLPD-EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            T   +Y+ + EP T  EA  SSE PQW+ A+K E+D  +   +W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL + E
Sbjct:  281 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 398          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR)

HSP 1 Score: 99.4 bits (246), Expect = 7.350e-22
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    4 PTGLASYLPDEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            P  L   +  EP T  EA  SSE PQW+ A+K E+D  +    W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL + E
Sbjct:  125 PDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 242          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR)

HSP 1 Score: 99.0 bits (245), Expect = 7.780e-22
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   34 EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            EP T  +A  SSE PQW+ A+K E+D  +    W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y +S SP    +SIR+ LA+ AL + E
Sbjct:  284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLE 391          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6NZH6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZH6_9ASTR)

HSP 1 Score: 99.4 bits (246), Expect = 7.830e-22
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    7 TGLASYLPD-EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            T   +Y+ + EP T  EA  SSE PQW+ A+K E+D  +   +W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G  Y ++ SP    +SIR+ LA+ AL + E
Sbjct:  378 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKQGFDYFDTYSPVTRITSIRLVLAIAALRNLE 495          
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR)

HSP 1 Score: 99.0 bits (245), Expect = 9.110e-22
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    7 TGLASYLPD-EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            T   +Y+ + EP T  EA  SSE PQW+ A+K E+D  +    W+ VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL + E
Sbjct:  125 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 242          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3JQF5_COCAP1.380e-2349.54Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A8J5YBS1_9ROSI1.830e-2349.54Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A5N6P523_9ASTR1.250e-2247.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A401G6E6_9APHY2.080e-2243.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PND6_9ASTR3.690e-2243.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PKD3_9ASTR4.040e-2244.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6MBP8_9ASTR7.350e-2244.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6P275_9ASTR7.780e-2246.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NZH6_9ASTR7.830e-2244.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NFL8_9ASTR9.110e-2244.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig692contigF-serratus_M_contig692:183746..184102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog164328.Phyra87173
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932113.7470498-CDS-F-serratus_M_contig692:183745..1841021622932113.7470498-CDS-F-serratus_M_contig692:183745..184102Fucus serratus maleCDSF-serratus_M_contig692 183746..184102 -
1690964153.8731058-CDS-F-serratus_M_contig692:183745..1841021690964153.8731058-CDS-F-serratus_M_contig692:183745..184102Fucus serratus maleCDSF-serratus_M_contig692 183746..184102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig692.18015.1prot_F-serratus_M_contig692.18015.1Fucus serratus malepolypeptideF-serratus_M_contig692 183746..184102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig692.18015.1

>prot_F-serratus_M_contig692.18015.1 ID=prot_F-serratus_M_contig692.18015.1|Name=mRNA_F-serratus_M_contig692.18015.1|organism=Fucus serratus male|type=polypeptide|length=119bp
MPTGLASYLPDEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDR
PKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPT
PTQSSIRMALAVMALLDWE
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mRNA from alignment at F-serratus_M_contig692:183746..184102-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig692.18015.1 ID=mRNA_F-serratus_M_contig692.18015.1|Name=mRNA_F-serratus_M_contig692.18015.1|organism=Fucus serratus male|type=mRNA|length=357bp|location=Sequence derived from alignment at F-serratus_M_contig692:183746..184102- (Fucus serratus male)
ATGCCGACTGGTCTCGCGAGCTACTTACCGGACGAGCCCACCACCCTGCA CGAAGCGAAGATGTCCTCCGAGTGGCCGCAATGGCGCAGCGCGCTCAAGC GCGAGATGGACGGCCAGATTACGCGTGGTGTATGGAAGGCCGTCGATCGA CCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAACGGAAGGT CGGCCAGGATGGCCGTGTAGAAAAATACAAGTGCCGCTTCGTGGCCAAGG GTTTCCGCCAGATTAAGGGGATTCATTACCAAGAGTCATCGTCGCCGACA CCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCTGTTGGA CTGGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig692:183746..184102-

>mRNA_F-serratus_M_contig692.18015.1 ID=mRNA_F-serratus_M_contig692.18015.1|Name=mRNA_F-serratus_M_contig692.18015.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig692:183746..184102- (Fucus serratus male)
ATGCCGACTGGTCTCGCGAGCTACTTACCGGACGAGCCCACCACCCTGCA
CGAAGCGAAGATGTCCTCCGAGTGGCCGCAATGGCGCAGCGCGCTCAAGC
GCGAGATGGACGGCCAGATTACGCGTGGTGTATGGAAGGCCGTCGATCGA
CCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAACGGAAGGT
CGGCCAGGATGGCCGTGTAGAAAAATACAAGTGCCGCTTCGTGGCCAAGG
GTTTCCGCCAGATTAAGGGGATTCATTACCAAGAGTCATCGTCGCCGACA
CCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCTGTTGGA
CTGGGAGATGCCGACTGGTCTCGCGAGCTACTTACCGGACGAGCCCACCA
CCCTGCACGAAGCGAAGATGTCCTCCGAGTGGCCGCAATGGCGCAGCGCG
CTCAAGCGCGAGATGGACGGCCAGATTACGCGTGGTGTATGGAAGGCCGT
CGATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAAC
GGAAGGTCGGCCAGGATGGCCGTGTAGAAAAATACAAGTGCCGCTTCGTG
GCCAAGGGTTTCCGCCAGATTAAGGGGATTCATTACCAAGAGTCATCGTC
GCCGACACCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCC
TGTTGGACTGGGAG
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