mRNA_F-serratus_M_contig692.18015.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP) HSP 1 Score: 103 bits (258), Expect = 1.380e-23 Identity = 54/109 (49.54%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 31 DEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEPTT EA E +W A+K EMD VW VD PKG +G K +FK+K DG V YK RFVAKGFRQI G+ Y E+ SP SIR+ LA+ A D+E
Sbjct: 396 DEPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYE 504
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI) HSP 1 Score: 103 bits (258), Expect = 1.830e-23 Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 31 DEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEP T EA S E +W AL+ EMD VW VD PKG +G K VFK+K+ DG V+ YK R VAKGFRQI G++Y E+ SP SIR++LA+ A D+E
Sbjct: 444 DEPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYE 552
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6P523_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P523_9ASTR) HSP 1 Score: 100 bits (249), Expect = 1.250e-22 Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 34 EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
EP T EA SSE PQW+ A+K E+D + W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL D E
Sbjct: 240 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPSGFKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLMLAIAALRDLE 347
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A401G6E6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G6E6_9APHY) HSP 1 Score: 100 bits (250), Expect = 2.080e-22 Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 1
Query: 31 DEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
+EP +L+ AK SSEWP+W +A++ E++ G W+ VD P+G+T +G K V +K ++G V K+K R VAKG+ QI G+ Y E+ SP +IR L + A+LDW+
Sbjct: 230 NEPKSLNNAKNSSEWPKWETAVQAELEQLDNMGTWELVDLPQGRTPVGNKWVLVKKTNREGEVIKFKARLVAKGYSQILGMDYTETYSPVVRLETIRAILGLAAILDWD 338
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR) HSP 1 Score: 98.6 bits (244), Expect = 3.690e-22 Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 4 PTGLASYLPDEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
P L + EP T +A SSE PQW+ A+K E+D + W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL + E
Sbjct: 60 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLE 177
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 100 bits (248), Expect = 4.040e-22 Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 7 TGLASYLPD-EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
T +Y+ + EP T EA SSE PQW+ A+K E+D + +W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL + E
Sbjct: 281 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 398
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR) HSP 1 Score: 99.4 bits (246), Expect = 7.350e-22 Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 4 PTGLASYLPDEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
P L + EP T EA SSE PQW+ A+K E+D + W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL + E
Sbjct: 125 PDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 242
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR) HSP 1 Score: 99.0 bits (245), Expect = 7.780e-22 Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 34 EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
EP T +A SSE PQW+ A+K E+D + W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y +S SP +SIR+ LA+ AL + E
Sbjct: 284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLE 391
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6NZH6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZH6_9ASTR) HSP 1 Score: 99.4 bits (246), Expect = 7.830e-22 Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 7 TGLASYLPD-EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
T +Y+ + EP T EA SSE PQW+ A+K E+D + +W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G Y ++ SP +SIR+ LA+ AL + E
Sbjct: 378 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKQGFDYFDTYSPVTRITSIRLVLAIAALRNLE 495
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR) HSP 1 Score: 99.0 bits (245), Expect = 9.110e-22 Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 1
Query: 7 TGLASYLPD-EPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
T +Y+ + EP T EA SSE PQW+ A+K E+D + W+ VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL + E
Sbjct: 125 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 242 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig692.18015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig692.18015.1 >prot_F-serratus_M_contig692.18015.1 ID=prot_F-serratus_M_contig692.18015.1|Name=mRNA_F-serratus_M_contig692.18015.1|organism=Fucus serratus male|type=polypeptide|length=119bp MPTGLASYLPDEPTTLHEAKMSSEWPQWRSALKREMDGQITRGVWKAVDRback to top mRNA from alignment at F-serratus_M_contig692:183746..184102- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig692.18015.1 ID=mRNA_F-serratus_M_contig692.18015.1|Name=mRNA_F-serratus_M_contig692.18015.1|organism=Fucus serratus male|type=mRNA|length=357bp|location=Sequence derived from alignment at F-serratus_M_contig692:183746..184102- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig692:183746..184102- >mRNA_F-serratus_M_contig692.18015.1 ID=mRNA_F-serratus_M_contig692.18015.1|Name=mRNA_F-serratus_M_contig692.18015.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig692:183746..184102- (Fucus serratus male)back to top |