mRNA_F-serratus_M_contig6773.17791.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6773.17791.1
Unique NamemRNA_F-serratus_M_contig6773.17791.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: D8LGK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK7_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.890e-71
Identity = 104/136 (76.47%), Postives = 120/136 (88.24%), Query Frame = 1
Query:    1 SKRGRSHLAERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVPWPC 408
            SKR RS LA+RISNKLHA  WVV+G  V+ +TDFVRVL+ED+RV+R+WFN+ + CFS+N VILAYLTVWLP+VRGI++SWNVY PRAIPTATVVGLICA+ LN+SLWNVWGFLTPLILFAVF GCLF   FVPWPC
Sbjct:  104 SKRRRSQLADRISNKLHAFFWVVVGVAVVYRTDFVRVLVEDERVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWPC 239          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A836CLB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB2_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.590e-61
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    4 KRGRSHLAERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVPWPC 408
            KR R+ LAERISNKLHA  W ++   V+  TDFVRVLL+D RV R WFN++ ACF++N VI+ YLT+WLP V+ +   WN+YCPRAIP AT VG+IC V+LN++LW+VWGFLTPLIL  VF GCLF+  FVPWPC
Sbjct:   25 KRRRTELAERISNKLHAAFWTIVAGVVVYYTDFVRVLLQDDRVKRPWFNLATACFAVNCVIMGYLTLWLPLVQRVSTPWNIYCPRAIPAATAVGVICGVSLNLALWSVWGFLTPLILLVVFMGCLFFLHFVPWPC 159          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: W4FWN3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWN3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.170e-40
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   25 AERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVP 399
            AE +S K+HAL+W+V    +L   D +RV   D RV+RV+FN+ + CF IN  I  YL++WLPYV+ I + W+VYCPR +PTATVVG++CA+   V LW VWGF TP ILF +F G L    F+P
Sbjct:   53 AEVVSTKIHALMWIVGAGFLLYYLDVLRVAFRDARVHRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A6G0XCK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCK9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.350e-40
Identity = 66/125 (52.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   25 AERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVP 399
            AE +S K+HA+LW+V  +++    D  RV   D RV+R++FN+ + CF IN  I  YL VWLPYV+ I + W+VYCPR IPTATVVGL+CA+ L + LW VWGF TP ILF +F G L    F+P
Sbjct:   46 AEWVSTKIHAVLWIVGAASLAYFLDVFRVAFRDARVHRIYFNIGLVCFGINCCITMYLAVWLPYVKKIDLEWSVYCPRMIPTATVVGLLCALMLTIGLWPVWGFFTPGILFVLFLGALMTAHFLP 170          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A8J2SGJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGJ0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.600e-40
Identity = 70/136 (51.47%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 SKRGRSHLAERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVPWPC 408
            +K+ RS LAE+++ K+ A  WV  G  V  QTD   VLL     NR W +V+ ACF+ N V+  YLTVWLP+V+ I + WNVYCPR IPT TV+GL C  +L   LW VWG LTPLIL  V   CL    F+P PC
Sbjct:   23 AKKRRSELAEQVATKIQAAAWVAAGGFVAYQTDLPVVLLAGTETNRFWCDVAAACFAANCVLCFYLTVWLPHVQRIDLEWNVYCPRVIPTMTVLGLTCGFSLIRGLWPVWGLLTPLILGLVAMACLMSLHFIPIPC 158          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A485KKF8_9STRA (Aste57867_8441 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKF8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.470e-40
Identity = 66/125 (52.80%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   25 AERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVP 399
            AE IS KLHALLWV+   +++   D  RV   D RV+RV+FN+ + CF IN  I  YL VWLPY++ I + W+VYCPR +PTAT VGL+CA+T  + LW VWG  TP ILF +F G L    F+P
Sbjct:   51 AEWISTKLHALLWVLGAGSLVYTLDVFRVAFRDARVHRVYFNIGLVCFGINCCITLYLAVWLPYIKKIDLEWSVYCPRMVPTATAVGLLCALTFTIGLWPVWGLFTPGILFVLFLGSLMTAHFLP 175          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A024UNE8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNE8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.270e-39
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   25 AERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVP 399
            AE IS K+HA LW+V    +L   D + V   D RV+RV+FN+ + CF IN  I  YL +WLPYV+ I + WNVYCPR +PTAT+VG++CA+   + LW VWGF TP ILF +F G L    F+P
Sbjct:   51 AEVISTKIHAFLWIVGAGFLLYYLDVMHVAFRDSRVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: W7TLQ7_9STRA (Transmembrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLQ7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.770e-37
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    1 SKRGRSHLAERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVPWP 405
            SKR R+ + ERIS KL A  WV+     L  T+FV V+L+D+R+NRV+F++++ C  IN+ I  YLTV+L  ++GI I W  YCPR IP AT  G++CA+ L  SLW V+GF  PLIL  +F G +F   F+PWP
Sbjct:   72 SKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWP 206          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A1W0A176_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A176_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.470e-36
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:   25 AERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVP 399
            AE +S KLHA LW+     +    D + V   D RV+R++FN+ + CF +N  I  YL VWLPYV+ I + W+VYCPR IPTAT++G++CA+   + LW VWGF TP ILF +F G L    F+P
Sbjct:   39 AEYVSTKLHAALWIGSAVALAYCLDVLNVAFHDPRVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163          
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Match: A0A067CEE4_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEE4_SAPPC)

HSP 1 Score: 129 bits (325), Expect = 1.270e-35
Identity = 64/125 (51.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   25 AERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFNVSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAVTLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVP 399
            AE +S KLHALLWV     +    D V + L D RV+R++FN+ V C  +N  I AYL +WLPYVR + + W+VYCPR IPTAT+VGL+ A+ L + LW VWG  TP ILF +F G L    F+P
Sbjct:   44 AEWLSTKLHALLWVGGACLLAYYLDVVHIALRDVRVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATIVGLVGALGLILGLWPVWGLFTPGILFVLFLGTLMTAHFLP 168          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6773.17791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK7_ECTSI2.890e-7176.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLB2_9STRA5.590e-6163.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W4FWN3_9STRA1.170e-4052.00Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A6G0XCK9_9STRA1.350e-4052.80Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8J2SGJ0_9STRA3.600e-4051.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A485KKF8_9STRA4.470e-4052.80Aste57867_8441 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024UNE8_9STRA1.270e-3951.20Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W7TLQ7_9STRA2.770e-3749.63Transmembrane protein n=1 Tax=Nannochloropsis gadi... [more]
A0A1W0A176_9STRA5.470e-3648.00Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
A0A067CEE4_SAPPC1.270e-3551.20Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6773contigF-serratus_M_contig6773:2864..3935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue9.3e-55
Seed eggNOG ortholog2880.D8LGK7
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BN0F@1,2S1N7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size411
Cds size411
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6773.17791.1prot_F-serratus_M_contig6773.17791.1Fucus serratus malepolypeptideF-serratus_M_contig6773 2864..3935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932067.521563-CDS-F-serratus_M_contig6773:2863..29721622932067.521563-CDS-F-serratus_M_contig6773:2863..2972Fucus serratus maleCDSF-serratus_M_contig6773 2864..2972 -
1690964129.842206-CDS-F-serratus_M_contig6773:2863..29721690964129.842206-CDS-F-serratus_M_contig6773:2863..2972Fucus serratus maleCDSF-serratus_M_contig6773 2864..2972 -
1622932067.5371494-CDS-F-serratus_M_contig6773:3285..34501622932067.5371494-CDS-F-serratus_M_contig6773:3285..3450Fucus serratus maleCDSF-serratus_M_contig6773 3286..3450 -
1690964129.856616-CDS-F-serratus_M_contig6773:3285..34501690964129.856616-CDS-F-serratus_M_contig6773:3285..3450Fucus serratus maleCDSF-serratus_M_contig6773 3286..3450 -
1622932067.555174-CDS-F-serratus_M_contig6773:3798..39351622932067.555174-CDS-F-serratus_M_contig6773:3798..3935Fucus serratus maleCDSF-serratus_M_contig6773 3799..3935 -
1690964129.8689208-CDS-F-serratus_M_contig6773:3798..39351690964129.8689208-CDS-F-serratus_M_contig6773:3798..3935Fucus serratus maleCDSF-serratus_M_contig6773 3799..3935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6773.17791.1

>prot_F-serratus_M_contig6773.17791.1 ID=prot_F-serratus_M_contig6773.17791.1|Name=mRNA_F-serratus_M_contig6773.17791.1|organism=Fucus serratus male|type=polypeptide|length=137bp
SKRGRSHLAERISNKLHALLWVVIGSTVLVQTDFVRVLLEDKRVNRVWFN
VSVACFSINMVILAYLTVWLPYVRGIKISWNVYCPRAIPTATVVGLICAV
TLNVSLWNVWGFLTPLILFAVFSGCLFWPAFVPWPC*
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mRNA from alignment at F-serratus_M_contig6773:2864..3935-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6773.17791.1 ID=mRNA_F-serratus_M_contig6773.17791.1|Name=mRNA_F-serratus_M_contig6773.17791.1|organism=Fucus serratus male|type=mRNA|length=1072bp|location=Sequence derived from alignment at F-serratus_M_contig6773:2864..3935- (Fucus serratus male)
TCAAAGCGAGGGCGGTCGCACCTCGCAGAAAGGATCTCGAACAAGCTGCA CGCTTTGCTCTGGGTCGTGATCGGGAGCACCGTATTAGTTCAGACCGACT TCGTGCGCGTACTGCTGGAGGATAAGCGGGTCAATCGGTGAGTGAACGAG GGCGTCTTCCATCCGCGTCGAGATAGTGCAGACGGCTGAGTACGGAATGT ACAGCAGCCCTGAGTTTTGAGGCCAGTAGGTTGCTTCTTGGAGACGACGA GGGGCATGACTTCGAAGATCCTGCCTTAAGCCACACGGTAACATGTATCT TGACACTAAAACACGCCGATGGTGTGTTGTCGGGAGACGCAACCAAATTG CTTGTAACGCTGTAGCGTGAGCTCCAAATATGAAATGTGTCGAGTAAAGT TCGTGGCCGCCCAACTTTACCGCCAATTGCCTTCCAAGCAGTCCATTCCG AACGCGCTTTGATTTCCATTCTTGGCCGTGTTCAGGGTTTGGTTCAATGT GAGTGTAGCGTGCTTCAGCATCAACATGGTTATCCTGGCGTACTTGACGG TGTGGCTGCCGTACGTCAGAGGCATCAAAATATCATGGAACGTGTACTGT CCGAGAGCCATCCCGACCGCAACCGTTGTCGGTCTCATCTGTGCCGTGAC GTGAGTTGTCTCGTACCAGGTACTGGTACAGCATTGTATTAATACTTCGT TAGCGCAACTTGCCGACTGAGATTTACCATACATTGCTTCCGCGAGTTCC GCGATGACGAAGGAGACATGCTTGCGACGAAAACGCGCGGGTCAGTGGCA AGCCTGGGCTTTGCGCCGTCGCTCGTTTCAAGGTTAAATCTGCGATAACA TATCAACCGAGCTGCGTTTCTCTGCTGTCTGAGATGGTGTCCTACGCCAC GTTGACTCGCGTCTTGCGTCTGTCTGTCTGTCCGCCGTGTTGCGTGCGAC CCTCCCCTTGCAGACTCAACGTATCGTTATGGAATGTATGGGGCTTCCTA ACGCCGTTGATCCTATTCGCGGTGTTCAGCGGCTGCTTGTTTTGGCCTGC ATTTGTGCCATGGCCGTGTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig6773:2864..3935-

>mRNA_F-serratus_M_contig6773.17791.1 ID=mRNA_F-serratus_M_contig6773.17791.1|Name=mRNA_F-serratus_M_contig6773.17791.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig6773:2864..3935- (Fucus serratus male)
TCAAAGCGAGGGCGGTCGCACCTCGCAGAAAGGATCTCGAACAAGCTGCA
CGCTTTGCTCTGGGTCGTGATCGGGAGCACCGTATTAGTTCAGACCGACT
TCGTGCGCGTACTGCTGGAGGATAAGCGGGTCAATCGTCAAAGCGAGGGC
GGTCGCACCTCGCAGAAAGGATCTCGAACAAGCTGCACGCTTTGCTCTGG
GTCGTGATCGGGAGCACCGTATTAGTTCAGACCGACTTCGTGCGCGTACT
GCTGGAGGATAAGCGGGTCAATCGGGTTTGGTTCAATGTGAGTGTAGCGT
GCTTCAGCATCAACATGGTTATCCTGGCGTACTTGACGGTGTGGCTGCCG
TACGTCAGAGGCATCAAAATATCATGGAACGTGTACTGTCCGAGAGCCAT
CCCGACCGCAACCGTTGTCGGTCTCATCTGTGCCGTGACGGTTTGGTTCA
ATGTGAGTGTAGCGTGCTTCAGCATCAACATGGTTATCCTGGCGTACTTG
ACGGTGTGGCTGCCGTACGTCAGAGGCATCAAAATATCATGGAACGTGTA
CTGTCCGAGAGCCATCCCGACCGCAACCGTTGTCGGTCTCATCTGTGCCG
TGACACTCAACGTATCGTTATGGAATGTATGGGGCTTCCTAACGCCGTTG
ATCCTATTCGCGGTGTTCAGCGGCTGCTTGTTTTGGCCTGCATTTGTGCC
ATGGCCGTGTTGAACTCAACGTATCGTTATGGAATGTATGGGGCTTCCTA
ACGCCGTTGATCCTATTCGCGGTGTTCAGCGGCTGCTTGTTTTGGCCTGC
ATTTGTGCCATGGCCGTGTTGA
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