mRNA_F-serratus_M_contig649.17440.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig649.17440.1
Unique NamemRNA_F-serratus_M_contig649.17440.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A8D1S2G1_PIG (Histone domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1S2G1_PIG)

HSP 1 Score: 190 bits (483), Expect = 7.430e-60
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHP 396
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAV    G  R +PGG +R H+ +CH RQ CH+HAQG+P CP +P
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALRGV-RGLPGGALRGHQPVCHPRQACHYHAQGYPACPPYP 131          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A4U5LP26_STECR (Histone domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LP26_STECR)

HSP 1 Score: 179 bits (454), Expect = 1.860e-55
Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHPRR 402
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  S++  P    RS+P  P+R H+ + H RQ  HHHAQ HP    HPRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF-QSSLCSPSRSPRSLPRRPLRGHQLVRHPRQASHHHAQRHPARSPHPRR 133          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A3R7NWW4_PENVA (Histone domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7NWW4_PENVA)

HSP 1 Score: 175 bits (443), Expect = 9.360e-54
Identity = 98/134 (73.13%), Postives = 109/134 (81.34%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHPRR 402
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D         G  G  R +PG P+R H+ + H RQ C+H+AQG+PTC  +PRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDP-LPVLCCHGSAGSLRGLPGRPLRGHQPVRHPRQACNHYAQGYPTCSPYPRR 133          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: B8A6X4_ORYSI (Histone domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8A6X4_ORYSI)

HSP 1 Score: 175 bits (443), Expect = 1.030e-53
Identity = 99/132 (75.00%), Postives = 108/132 (81.82%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHP 396
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP R+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAVA      R +P   +R H+ L H RQ  HHHAQGHP  P HP
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAPR-LPRRALRGHQPLRHPRQARHHHAQGHPARPPHP 131          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A1Z5LBX3_ORNMO (Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LBX3_ORNMO)

HSP 1 Score: 175 bits (443), Expect = 5.860e-53
Identity = 100/141 (70.92%), Postives = 109/141 (77.30%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVA---------------GPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHP 378
            MARTKQ ARKSTGGKAPRK LATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAV                G  GG RS+P  PVRRH+ + H RQ  HHHA+G+P
Sbjct:    1 MARTKQTARKSTGGKAPRKHLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMAARHRGSSLPELRRDGSAGGQRSLPRRPVRRHQPVRHPRQARHHHAKGYP 141          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A3Q2CVD4_CYPVA (Histone H3.3 n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2CVD4_CYPVA)

HSP 1 Score: 173 bits (438), Expect = 7.170e-53
Identity = 101/160 (63.12%), Postives = 111/160 (69.38%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAG--------------------------PPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHPRR 402
            MARTKQ ARKSTGGKAPRKQLATKAARK+AP+ GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  +A+                              GG R +PGG VR H+ + H RQ  HHHAQ HP    HPRR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQVNKPLDHRRPSALTQTPDPNPLLCSAGGQRGLPGGAVRGHQPVRHPRQARHHHAQRHPAGTPHPRR 160          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A8C0XBJ7_CASCN (Histone H3 n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0XBJ7_CASCN)

HSP 1 Score: 165 bits (418), Expect = 1.160e-50
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPV 315
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAV G  GG R +PGGPV
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMGAAGGQRGLPGGPV 105          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A4C2A7D3_EUMVA (Histone H3 n=433 Tax=Arthropoda TaxID=6656 RepID=A0A4C2A7D3_EUMVA)

HSP 1 Score: 166 bits (420), Expect = 4.420e-50
Identity = 96/132 (72.73%), Postives = 105/132 (79.55%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHP 396
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAV        +   G +    +LC  RQT HHHA+GH   P+HP
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG-LFEDTNLCAIRQTRHHHAEGHTARPSHP 131          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A2N9EL89_FAGSY (Histone H3 n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EL89_FAGSY)

HSP 1 Score: 164 bits (415), Expect = 6.810e-50
Identity = 92/124 (74.19%), Postives = 103/124 (83.06%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQG 372
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP R+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAV+       +   G  R H+SL +SRQ  HHHA+G
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFRGHQSLRYSRQESHHHAKG 124          
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A8C7IB67_ONCKI (Histone H3 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7IB67_ONCKI)

HSP 1 Score: 162 bits (409), Expect = 1.110e-48
Identity = 97/135 (71.85%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLC-HSRQTCHHHAQGHPTCPAHPRR 402
            MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF  SAV        +   G +    +LC H RQ   HHAQGHP  P++ RR
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG-LFEDTNLCGHPRQEGDHHAQGHPAGPSYSRR 134          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D1S2G1_PIG7.430e-6077.27Histone domain-containing protein n=1 Tax=Sus scro... [more]
A0A4U5LP26_STECR1.860e-5574.63Histone domain-containing protein n=1 Tax=Steinern... [more]
A0A3R7NWW4_PENVA9.360e-5473.13Histone domain-containing protein n=1 Tax=Penaeus ... [more]
B8A6X4_ORYSI1.030e-5375.00Histone domain-containing protein n=1 Tax=Oryza sa... [more]
A0A1Z5LBX3_ORNMO5.860e-5370.92Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata... [more]
A0A3Q2CVD4_CYPVA7.170e-5363.13Histone H3.3 n=1 Tax=Cyprinodon variegatus TaxID=2... [more]
A0A8C0XBJ7_CASCN1.160e-5085.71Histone H3 n=1 Tax=Castor canadensis TaxID=51338 R... [more]
A0A4C2A7D3_EUMVA4.420e-5072.73Histone H3 n=433 Tax=Arthropoda TaxID=6656 RepID=A... [more]
A0A2N9EL89_FAGSY6.810e-5074.19Histone H3 n=1 Tax=Fagus sylvatica TaxID=28930 Rep... [more]
A0A8C7IB67_ONCKI1.110e-4871.85Histone H3 n=1 Tax=Oncorhynchus kisutch TaxID=8019... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig649contigF-serratus_M_contig649:273202..273603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score149.8
Seed ortholog evalue5.7e-34
Seed eggNOG ortholog192875.XP_004349092.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs39ZTV@33154,COG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size402
Cds size258
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931999.1486535-UTR-F-serratus_M_contig649:273201..2733451622931999.1486535-UTR-F-serratus_M_contig649:273201..273345Fucus serratus maleUTRF-serratus_M_contig649 273202..273345 -
1690964095.6653583-UTR-F-serratus_M_contig649:273201..2733451690964095.6653583-UTR-F-serratus_M_contig649:273201..273345Fucus serratus maleUTRF-serratus_M_contig649 273202..273345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931999.1744578-CDS-F-serratus_M_contig649:273345..2736031622931999.1744578-CDS-F-serratus_M_contig649:273345..273603Fucus serratus maleCDSF-serratus_M_contig649 273346..273603 -
1690964095.6880536-CDS-F-serratus_M_contig649:273345..2736031690964095.6880536-CDS-F-serratus_M_contig649:273345..273603Fucus serratus maleCDSF-serratus_M_contig649 273346..273603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig649.17440.1prot_F-serratus_M_contig649.17440.1Fucus serratus malepolypeptideF-serratus_M_contig649 273346..273603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig649.17440.1

>prot_F-serratus_M_contig649.17440.1 ID=prot_F-serratus_M_contig649.17440.1|Name=mRNA_F-serratus_M_contig649.17440.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALR
EIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*
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mRNA from alignment at F-serratus_M_contig649:273202..273603-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig649.17440.1 ID=mRNA_F-serratus_M_contig649.17440.1|Name=mRNA_F-serratus_M_contig649.17440.1|organism=Fucus serratus male|type=mRNA|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig649:273202..273603- (Fucus serratus male)
ATGGCCCGTACCAAGCAGATTGCCCGAAAGTCCACTGGTGGGAAGGCTCC CCGCAAGCAGCTTGCTACTAAGGCCGCCCGCAAAACTGCCCCAGCGCTCG GCGGTGTCAAGAAACCTCAACGGTATAGGCCAGGGACCGTGGCCCTCCGC GAGATCCGGCGGCATCAGAAGTCTACGGAGTTGCTCATCCGGAAGCTCCC GTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAAAGTGATGTGC GCTTCTAAGGCTCTGCTGTTGCTGGCCCTCCAGGAGGCGGCCGAAGCGTA CCTGGTGGGCCTGTTCGAAGACACGAATCTCTGTGCCATTCGCGCCAAAC GTGTCACCATCATGCCCAAGGGCATCCAACTTGCCCGGCGCATCCGCGGC GA
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Coding sequence (CDS) from alignment at F-serratus_M_contig649:273202..273603-

>mRNA_F-serratus_M_contig649.17440.1 ID=mRNA_F-serratus_M_contig649.17440.1|Name=mRNA_F-serratus_M_contig649.17440.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig649:273202..273603- (Fucus serratus male)
ATGGCCCGTACCAAGCAGATTGCCCGAAAGTCCACTGGTGGGAAGGCTCC
CCGCAAGCAGCTTGCTACTAAGGCCGCCCGCAAAACTGCCCCAGCGCTCG
GCGGTGTCAAGAAACCTCAACGGTATAGGCCAGGGACCGTGGCCCTCCGC
GAGATCCGGCGGCATCAGAAGTCTACGGAGTTGCTCATCCGGAAGCTCCC
GTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAAAGTGATGTGC
GCTTCTAAATGGCCCGTACCAAGCAGATTGCCCGAAAGTCCACTGGTGGG
AAGGCTCCCCGCAAGCAGCTTGCTACTAAGGCCGCCCGCAAAACTGCCCC
AGCGCTCGGCGGTGTCAAGAAACCTCAACGGTATAGGCCAGGGACCGTGG
CCCTCCGCGAGATCCGGCGGCATCAGAAGTCTACGGAGTTGCTCATCCGG
AAGCTCCCGTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAAAG
TGATGTGCGCTTCTAA
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