mRNA_F-serratus_M_contig649.17440.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A8D1S2G1_PIG (Histone domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1S2G1_PIG) HSP 1 Score: 190 bits (483), Expect = 7.430e-60 Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHP 396
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAV G R +PGG +R H+ +CH RQ CH+HAQG+P CP +P
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALRGV-RGLPGGALRGHQPVCHPRQACHYHAQGYPACPPYP 131
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A4U5LP26_STECR (Histone domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LP26_STECR) HSP 1 Score: 179 bits (454), Expect = 1.860e-55 Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHPRR 402
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF S++ P RS+P P+R H+ + H RQ HHHAQ HP HPRR
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF-QSSLCSPSRSPRSLPRRPLRGHQLVRHPRQASHHHAQRHPARSPHPRR 133
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A3R7NWW4_PENVA (Histone domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7NWW4_PENVA) HSP 1 Score: 175 bits (443), Expect = 9.360e-54 Identity = 98/134 (73.13%), Postives = 109/134 (81.34%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHPRR 402
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D G G R +PG P+R H+ + H RQ C+H+AQG+PTC +PRR
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDP-LPVLCCHGSAGSLRGLPGRPLRGHQPVRHPRQACNHYAQGYPTCSPYPRR 133
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: B8A6X4_ORYSI (Histone domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8A6X4_ORYSI) HSP 1 Score: 175 bits (443), Expect = 1.030e-53 Identity = 99/132 (75.00%), Postives = 108/132 (81.82%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHP 396
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP R+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAVA R +P +R H+ L H RQ HHHAQGHP P HP
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAPR-LPRRALRGHQPLRHPRQARHHHAQGHPARPPHP 131
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A1Z5LBX3_ORNMO (Histone H3 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LBX3_ORNMO) HSP 1 Score: 175 bits (443), Expect = 5.860e-53 Identity = 100/141 (70.92%), Postives = 109/141 (77.30%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVA---------------GPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHP 378
MARTKQ ARKSTGGKAPRK LATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAV G GG RS+P PVRRH+ + H RQ HHHA+G+P
Sbjct: 1 MARTKQTARKSTGGKAPRKHLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMAARHRGSSLPELRRDGSAGGQRSLPRRPVRRHQPVRHPRQARHHHAKGYP 141
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A3Q2CVD4_CYPVA (Histone H3.3 n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2CVD4_CYPVA) HSP 1 Score: 173 bits (438), Expect = 7.170e-53 Identity = 101/160 (63.12%), Postives = 111/160 (69.38%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAG--------------------------PPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHPRR 402
MARTKQ ARKSTGGKAPRKQLATKAARK+AP+ GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF +A+ GG R +PGG VR H+ + H RQ HHHAQ HP HPRR
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQVNKPLDHRRPSALTQTPDPNPLLCSAGGQRGLPGGAVRGHQPVRHPRQARHHHAQRHPAGTPHPRR 160
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A8C0XBJ7_CASCN (Histone H3 n=1 Tax=Castor canadensis TaxID=51338 RepID=A0A8C0XBJ7_CASCN) HSP 1 Score: 165 bits (418), Expect = 1.160e-50 Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPV 315
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAV G GG R +PGGPV
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMGAAGGQRGLPGGPV 105
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A4C2A7D3_EUMVA (Histone H3 n=433 Tax=Arthropoda TaxID=6656 RepID=A0A4C2A7D3_EUMVA) HSP 1 Score: 166 bits (420), Expect = 4.420e-50 Identity = 96/132 (72.73%), Postives = 105/132 (79.55%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQGHPTCPAHP 396
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAV + G + +LC RQT HHHA+GH P+HP
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG-LFEDTNLCAIRQTRHHHAEGHTARPSHP 131
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A2N9EL89_FAGSY (Histone H3 n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EL89_FAGSY) HSP 1 Score: 164 bits (415), Expect = 6.810e-50 Identity = 92/124 (74.19%), Postives = 103/124 (83.06%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLCHSRQTCHHHAQG 372
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP R+RPGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAV+ + G R H+SL +SRQ HHHA+G
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFRGHQSLRYSRQESHHHAKG 124
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Match: A0A8C7IB67_ONCKI (Histone H3 n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7IB67_ONCKI) HSP 1 Score: 162 bits (409), Expect = 1.110e-48 Identity = 97/135 (71.85%), Postives = 106/135 (78.52%), Query Frame = 1
Query: 1 MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALREIRRHQKSTELLIRKLPFQRLVREIAQDFKSDVRF*GSAVAGPPGGGRSVPGGPVRRHESLC-HSRQTCHHHAQGHPTCPAHPRR 402
MARTKQ ARKSTGGKAPRKQLATKAARK+APA GGVKKP RYRPGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFK+D+RF SAV + G + +LC H RQ HHAQGHP P++ RR
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG-LFEDTNLCGHPRQEGDHHAQGHPAGPSYSRR 134 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig649.17440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig649.17440.1 >prot_F-serratus_M_contig649.17440.1 ID=prot_F-serratus_M_contig649.17440.1|Name=mRNA_F-serratus_M_contig649.17440.1|organism=Fucus serratus male|type=polypeptide|length=86bp MARTKQIARKSTGGKAPRKQLATKAARKTAPALGGVKKPQRYRPGTVALRback to top mRNA from alignment at F-serratus_M_contig649:273202..273603- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig649.17440.1 ID=mRNA_F-serratus_M_contig649.17440.1|Name=mRNA_F-serratus_M_contig649.17440.1|organism=Fucus serratus male|type=mRNA|length=402bp|location=Sequence derived from alignment at F-serratus_M_contig649:273202..273603- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig649:273202..273603- >mRNA_F-serratus_M_contig649.17440.1 ID=mRNA_F-serratus_M_contig649.17440.1|Name=mRNA_F-serratus_M_contig649.17440.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig649:273202..273603- (Fucus serratus male)back to top |