mRNA_F-serratus_M_contig642.17343.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig642.17343.1
Unique NamemRNA_F-serratus_M_contig642.17343.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A6H5KEF5_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEF5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.680e-13
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGID---NSNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
            P W  H     F+ QD+VFLHHQEKTLA+ G D   +S+Y +AVYTP  +D  V+ VRKWIA    GG
Sbjct:  372 PQWLIHATSGLFLYQDMVFLHHQEKTLASVGYDGTRSSSYGRAVYTPAPADRAVMAVRKWIATHGSGG 439          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: D8LGA1_ECTSI (Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.360e-12
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDN---SNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
            +P W  H     F+ QD+V LHHQ+KTLA+ G D    S+Y KAVYTP  +D  V+ VRKWIA    GG
Sbjct:  283 IPQWLMHASAGIFLYQDMVLLHHQDKTLASVGHDGNSTSSYGKAVYTPAPADRAVMAVRKWIATHGSGG 351          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A7S1E9P2_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E9P2_HEMAN)

HSP 1 Score: 62.4 bits (150), Expect = 9.010e-10
Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 1
Query:    1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNS-----NYDKAVYTPTASDTGVINVRKWIANIAGGG 198
            MP W  H     F+  D+VFLHHQEK LAA G  N      +Y++ V+TPT  D GV   RKW+     GG
Sbjct:  392 MPMWLSHITASLFLHMDMVFLHHQEKILAARGYKNEKGGKGDYNEIVHTPTEQDLGVTMFRKWLQYSCEGG 462          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: K9UMA3_CHAP6 (Ring-hydroxylating dioxygenase, large terminal subunit n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9UMA3_CHAP6)

HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
            MP W  H L   F+ QD+VFLH+QE+T+AA       +  AVYTP   D   I  R+W+   AGGG
Sbjct:  305 MPTWLGHILASLFLHQDMVFLHYQERTMAAK----DRWLDAVYTPNPQDKMTITFRQWLEKRAGGG 366          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A0P4V0M2_9CYAN (Pheophorbide a oxygenase n=1 Tax=Leptolyngbya sp. NIES-2104 TaxID=1552121 RepID=A0A0P4V0M2_9CYAN)

HSP 1 Score: 58.2 bits (139), Expect = 2.790e-8
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
            P W+ H   +  +  D +FLH+QE+ LAA G D+SN+ KA Y PT +D+ V ++RKWI
Sbjct:  295 PRWYSHIGNNAVLEDDQIFLHYQERYLAAKG-DSSNFAKAFYLPTRADSFVSSLRKWI 351          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A7R9TE91_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TE91_9VIRI)

HSP 1 Score: 57.0 bits (136), Expect = 4.500e-8
Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNS-NYDKAVYTPTASDTGVINVRKWIA 180
            MP W  H LGH F+AQD+VFLHHQ++TL    ID   ++ +A Y P   D    + R+W+A
Sbjct:   72 MPRWCIHVLGHLFMAQDMVFLHHQQRTLQNIEIDEGKDWRQACYFPGEFDMIAASFRRWLA 132          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A2T1CWP4_9CYAN (Cell death suppressor protein Lls1 n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CWP4_9CYAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.820e-7
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
            P W+ H   +  +  D +FLHHQE+ LAA G  N NY KA Y PT +D  V  +R+W+
Sbjct:  293 PTWYSHLNQNSVLEDDQIFLHHQERYLAALGGSN-NYSKAFYLPTKADLYVSELRQWV 349          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A150FY86_GONPE (Rieske domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FY86_GONPE)

HSP 1 Score: 54.7 bits (130), Expect = 4.660e-7
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1
Query:    1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
            MP W  HT    F+ QD VFLH QE+T+AA G  +  +    + P  +D      RKW+ ++AGGG
Sbjct:  257 MPTWLAHTTASMFLHQDQVFLHAQERTVAARG--SGAHGAKYFMPAPADNMTTAFRKWLGSMAGGG 320          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: K9VVY4_9CYAN (Pheophorbide a oxygenase n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VVY4_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 8.730e-7
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
            P W+ H   +  +  D +FLH+QE+ LAA G   +N+ KA Y PT +DT V  +RKW+
Sbjct:  296 PRWYSHLGQNNVLEDDQIFLHYQERYLAAKG-GGANFAKAFYLPTRADTFVTALRKWV 352          
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A1Z4UQB1_9CYAN (Pheophorbide a oxygenase n=8 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UQB1_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 8.730e-7
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1
Query:    4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
            P W+ H   ++ +  D +FLHHQE+ LAA G  + N+ KA Y PT +D  V  +R W+
Sbjct:  300 PRWYSHIGQNRVLEDDQIFLHHQERYLAARG-GSENFTKAFYLPTKADLFVFQLRSWV 356          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KEF5_9PHAE2.680e-1352.94Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
D8LGA1_ECTSI2.360e-1250.72Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculo... [more]
A0A7S1E9P2_HEMAN9.010e-1045.07Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
K9UMA3_CHAP61.090e-845.45Ring-hydroxylating dioxygenase, large terminal sub... [more]
A0A0P4V0M2_9CYAN2.790e-846.55Pheophorbide a oxygenase n=1 Tax=Leptolyngbya sp. ... [more]
A0A7R9TE91_9VIRI4.500e-845.90Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A2T1CWP4_9CYAN1.820e-744.83Cell death suppressor protein Lls1 n=1 Tax=Pleuroc... [more]
A0A150FY86_GONPE4.660e-740.91Rieske domain-containing protein n=1 Tax=Gonium pe... [more]
K9VVY4_9CYAN8.730e-743.10Pheophorbide a oxygenase n=1 Tax=Crinalium epipsam... [more]
A0A1Z4UQB1_9CYAN8.730e-741.38Pheophorbide a oxygenase n=8 Tax=Sphaerospermopsis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig642contigF-serratus_M_contig642:31662..32368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.2e-11
Seed eggNOG ortholog2880.D8LGA0
KEGG rclassRC03394
KEGG koko:K13071
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pheophorbide a oxygenase activity
EggNOG OGs2QQ8U@2759,COG4638@1
EC1.14.15.17
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size200
Cds size198
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig642.17343.1prot_F-serratus_M_contig642.17343.1Fucus serratus malepolypeptideF-serratus_M_contig642 31662..32368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931983.5443134-CDS-F-serratus_M_contig642:31661..317331622931983.5443134-CDS-F-serratus_M_contig642:31661..31733Fucus serratus maleCDSF-serratus_M_contig642 31662..31733 +
1690964088.7150571-CDS-F-serratus_M_contig642:31661..317331690964088.7150571-CDS-F-serratus_M_contig642:31661..31733Fucus serratus maleCDSF-serratus_M_contig642 31662..31733 +
1622931983.5636585-CDS-F-serratus_M_contig642:32016..321081622931983.5636585-CDS-F-serratus_M_contig642:32016..32108Fucus serratus maleCDSF-serratus_M_contig642 32017..32108 +
1690964088.7326095-CDS-F-serratus_M_contig642:32016..321081690964088.7326095-CDS-F-serratus_M_contig642:32016..32108Fucus serratus maleCDSF-serratus_M_contig642 32017..32108 +
1622931983.606584-CDS-F-serratus_M_contig642:32334..323681622931983.606584-CDS-F-serratus_M_contig642:32334..32368Fucus serratus maleCDSF-serratus_M_contig642 32335..32368 +
1690964088.7469847-CDS-F-serratus_M_contig642:32334..323681690964088.7469847-CDS-F-serratus_M_contig642:32334..32368Fucus serratus maleCDSF-serratus_M_contig642 32335..32368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig642.17343.1

>prot_F-serratus_M_contig642.17343.1 ID=prot_F-serratus_M_contig642.17343.1|Name=mRNA_F-serratus_M_contig642.17343.1|organism=Fucus serratus male|type=polypeptide|length=66bp
MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDT
GVINVRKWIANIAGGG
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mRNA from alignment at F-serratus_M_contig642:31662..32368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig642.17343.1 ID=mRNA_F-serratus_M_contig642.17343.1|Name=mRNA_F-serratus_M_contig642.17343.1|organism=Fucus serratus male|type=mRNA|length=707bp|location=Sequence derived from alignment at F-serratus_M_contig642:31662..32368+ (Fucus serratus male)
ATGCCTGATTGGTTTCAGCACACGTTAGGTCATAAGTTCATCGCCCAGGA CCTGGTCTTCCTTCACCACCAGGCAAGTCAAAGGCTACAGTAGAAAAGAC TCAGAAACTTTCGGTCCACCAGGACGAGAAAAATACTTGAACTTGATGTC ACATCACAAAATTTATCATGGGACAAAGTCACATCTGTCTGGAGGCTGGT GTTGTCTTTGTTCCTTTCGAGAGGCGGACGGAATCATTTTGTCAAGTTCA CAGGTGGCACTGCATCCCGTCTTGCTTATGTCGACCTTGTGCTTCTAAAA GCGGCGAACATTTCCGAATATTTGTAAAATATATGTGACGATGTTCTCCA TGCAGGAAAAAACGTTGGCCGCTTCAGGAATCGATAACAGCAATTATGAC AAGGCCGTGTACACACCCACGGCCTCTGACACGGGGGTGATCAACGTGTG AGTAAGGGGAAGCTCGTACGCCCCATAGCTTGATTCTTGCCCCCACCCAG TGCGGTTTGTGTGCGAGCGGTCCACTGCTTCAAATAGTTAACACAATTTT GACTATGTTCGGGTCGCTTTGATTGTTGAAATTAACAATACCTTGGTTGT AGTGACCATGCAACAAATTGACGGCTCAAGCTCGCAAATGTAAAGAAACC CTTTTTCGCGACGCGCCATCCAGGAGGAAATGGATCGCAAACATCGCCGG GGGCGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig642:31662..32368+

>mRNA_F-serratus_M_contig642.17343.1 ID=mRNA_F-serratus_M_contig642.17343.1|Name=mRNA_F-serratus_M_contig642.17343.1|organism=Fucus serratus male|type=CDS|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig642:31662..32368+ (Fucus serratus male)
ATGCCTGATTGGTTTCAGCACACGTTAGGTCATAAGTTCATCGCCCAGGA
CCTGGTCTTCCTTCACCACCAGATGCCTGATTGGTTTCAGCACACGTTAG
GTCATAAGTTCATCGCCCAGGACCTGGTCTTCCTTCACCACCAGGAAAAA
ACGTTGGCCGCTTCAGGAATCGATAACAGCAATTATGACAAGGCCGTGTA
CACACCCACGGCCTCTGACACGGGGGTGATCAACGTGAAAAAACGTTGGC
CGCTTCAGGAATCGATAACAGCAATTATGACAAGGCCGTGTACACACCCA
CGGCCTCTGACACGGGGGTGATCAACGTGAGGAAATGGATCGCAAACATC
GCCGGGGGCGGTGAGGAAATGGATCGCAAACATCGCCGGGGGCGGT
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