mRNA_F-serratus_M_contig642.17343.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A6H5KEF5_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEF5_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 2.680e-13 Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGID---NSNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
P W H F+ QD+VFLHHQEKTLA+ G D +S+Y +AVYTP +D V+ VRKWIA GG
Sbjct: 372 PQWLIHATSGLFLYQDMVFLHHQEKTLASVGYDGTRSSSYGRAVYTPAPADRAVMAVRKWIATHGSGG 439
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: D8LGA1_ECTSI (Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA1_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 2.360e-12 Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDN---SNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
+P W H F+ QD+V LHHQ+KTLA+ G D S+Y KAVYTP +D V+ VRKWIA GG
Sbjct: 283 IPQWLMHASAGIFLYQDMVLLHHQDKTLASVGHDGNSTSSYGKAVYTPAPADRAVMAVRKWIATHGSGG 351
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A7S1E9P2_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E9P2_HEMAN) HSP 1 Score: 62.4 bits (150), Expect = 9.010e-10 Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 1
Query: 1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNS-----NYDKAVYTPTASDTGVINVRKWIANIAGGG 198
MP W H F+ D+VFLHHQEK LAA G N +Y++ V+TPT D GV RKW+ GG
Sbjct: 392 MPMWLSHITASLFLHMDMVFLHHQEKILAARGYKNEKGGKGDYNEIVHTPTEQDLGVTMFRKWLQYSCEGG 462
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: K9UMA3_CHAP6 (Ring-hydroxylating dioxygenase, large terminal subunit n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9UMA3_CHAP6) HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
MP W H L F+ QD+VFLH+QE+T+AA + AVYTP D I R+W+ AGGG
Sbjct: 305 MPTWLGHILASLFLHQDMVFLHYQERTMAAK----DRWLDAVYTPNPQDKMTITFRQWLEKRAGGG 366
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A0P4V0M2_9CYAN (Pheophorbide a oxygenase n=1 Tax=Leptolyngbya sp. NIES-2104 TaxID=1552121 RepID=A0A0P4V0M2_9CYAN) HSP 1 Score: 58.2 bits (139), Expect = 2.790e-8 Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
P W+ H + + D +FLH+QE+ LAA G D+SN+ KA Y PT +D+ V ++RKWI
Sbjct: 295 PRWYSHIGNNAVLEDDQIFLHYQERYLAAKG-DSSNFAKAFYLPTRADSFVSSLRKWI 351
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A7R9TE91_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TE91_9VIRI) HSP 1 Score: 57.0 bits (136), Expect = 4.500e-8 Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNS-NYDKAVYTPTASDTGVINVRKWIA 180
MP W H LGH F+AQD+VFLHHQ++TL ID ++ +A Y P D + R+W+A
Sbjct: 72 MPRWCIHVLGHLFMAQDMVFLHHQQRTLQNIEIDEGKDWRQACYFPGEFDMIAASFRRWLA 132
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A2T1CWP4_9CYAN (Cell death suppressor protein Lls1 n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CWP4_9CYAN) HSP 1 Score: 55.8 bits (133), Expect = 1.820e-7 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
P W+ H + + D +FLHHQE+ LAA G N NY KA Y PT +D V +R+W+
Sbjct: 293 PTWYSHLNQNSVLEDDQIFLHHQERYLAALGGSN-NYSKAFYLPTKADLYVSELRQWV 349
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A150FY86_GONPE (Rieske domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FY86_GONPE) HSP 1 Score: 54.7 bits (130), Expect = 4.660e-7 Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1
Query: 1 MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWIANIAGGG 198
MP W HT F+ QD VFLH QE+T+AA G + + + P +D RKW+ ++AGGG
Sbjct: 257 MPTWLAHTTASMFLHQDQVFLHAQERTVAARG--SGAHGAKYFMPAPADNMTTAFRKWLGSMAGGG 320
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: K9VVY4_9CYAN (Pheophorbide a oxygenase n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VVY4_9CYAN) HSP 1 Score: 53.9 bits (128), Expect = 8.730e-7 Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
P W+ H + + D +FLH+QE+ LAA G +N+ KA Y PT +DT V +RKW+
Sbjct: 296 PRWYSHLGQNNVLEDDQIFLHYQERYLAAKG-GGANFAKAFYLPTRADTFVTALRKWV 352
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Match: A0A1Z4UQB1_9CYAN (Pheophorbide a oxygenase n=8 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UQB1_9CYAN) HSP 1 Score: 53.9 bits (128), Expect = 8.730e-7 Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1
Query: 4 PDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTGVINVRKWI 177
P W+ H ++ + D +FLHHQE+ LAA G + N+ KA Y PT +D V +R W+
Sbjct: 300 PRWYSHIGQNRVLEDDQIFLHHQERYLAARG-GSENFTKAFYLPTKADLFVFQLRSWV 356 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig642.17343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig642.17343.1 >prot_F-serratus_M_contig642.17343.1 ID=prot_F-serratus_M_contig642.17343.1|Name=mRNA_F-serratus_M_contig642.17343.1|organism=Fucus serratus male|type=polypeptide|length=66bp MPDWFQHTLGHKFIAQDLVFLHHQEKTLAASGIDNSNYDKAVYTPTASDTback to top mRNA from alignment at F-serratus_M_contig642:31662..32368+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig642.17343.1 ID=mRNA_F-serratus_M_contig642.17343.1|Name=mRNA_F-serratus_M_contig642.17343.1|organism=Fucus serratus male|type=mRNA|length=707bp|location=Sequence derived from alignment at F-serratus_M_contig642:31662..32368+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig642:31662..32368+ >mRNA_F-serratus_M_contig642.17343.1 ID=mRNA_F-serratus_M_contig642.17343.1|Name=mRNA_F-serratus_M_contig642.17343.1|organism=Fucus serratus male|type=CDS|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig642:31662..32368+ (Fucus serratus male)back to top |