mRNA_F-serratus_M_contig64.17305.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig64.17305.1
Unique NamemRNA_F-serratus_M_contig64.17305.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.300e-75
Identity = 137/256 (53.52%), Postives = 181/256 (70.70%), Query Frame = 2 
Query:   62 CLVLAVASTTYLFTDVTAFSAGMRATLGM-PHDFASLSSSAV--PAPTCSSSAGRSSADLPARRRRLPSSALSMSPPEGMG-VEDGTESIANQDPNLYGKVGDTFVKCGKCQACYPIDVEVLGRGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDRMNEARAKAMEPSRFGFDLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPA 817
            CLVLA  +T  +   V AFS G+R  +   PHD + ++SS+   P P   ++A  + +           +ALSM+PP   G  E   +     DP+L G  GDT+VKCGKCQACYP++++VLGRGR+IECSVC N WFQ+ +RALTLT+NFLMKDW+EDR+  A A+A + +  GF+LFVGNIP SVSEKDL AIFGNFG+V S++L  DE+ +S+G+G VKM +E DG+KAI ALNG+EIQGR++LVK+ ASN A
Sbjct:   41 CLVLAALTTMAVIPGVGAFSGGLRVAITQQPHDCSMVASSSTVSPRPLNPAAAAVTPSGXXXXXXXXSPTALSMAPPMDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRV-AATAEAAK-NFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSA 294
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A835YSE2_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.180e-31
Identity = 65/161 (40.37%), Postives = 98/161 (60.87%), Query Frame = 2 
Query:  350 VGDTFVKCGKCQACYPIDVEVLG-RGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDRMNEARAKAMEPSRFG-----------FDLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVK 796
            +GD ++KCG C A Y ID ++LG RGR ++CSVC ++WFQ+ +R   L   F MKD+ E+++   +A   +    G             +FVGN+P S  EKDL+ +F + G+VVS+ + KD  D SKG+G V+M ++A GQ A+  L+  +I GR I V+
Sbjct:    1 MGDPYIKCGSCSAVYTIDPQMLGERGRRVQCSVCDHSWFQASERVFRLGNGFSMKDFPEEKLAAIKANIEQGLTAGGAPKGNGRKGEMTMFVGNLPFSFGEKDLSDLFADHGEVVSAVIIKDNMDRSKGYGFVEMLNKAQGQAAMDTLHNYQINGRPITVR 161
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 119 bits (297), Expect = 3.240e-27
Identity = 69/193 (35.75%), Postives = 111/193 (57.51%), Query Frame = 2 
Query:  275 SPPEGMGVEDGTESIANQDPNLYGKVGDTFVKCGKCQACYPIDVEVLG-RGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDRMNEARAKAMEPSRFGFD---------LFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASR 823
            SP   +GV D   +    DPN+       FV+CG+C A Y +  +++   G  ++C VC +TWFQ+ +R   L+  +++KD+ ED + E  A+ +  +R   D         +FVGN+P S++E D+  +F   G VVS ++ KD+ + SKGFG V+MA + +G++AI AL+G E+ GR I V++  S    R
Sbjct:   86 SPAAAVGVGD---AAPKSDPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPED-LKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPR 269
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 93.6 bits (231), Expect = 4.380e-18
Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 2 
Query:  227 DLPARRRRLPSSALSMSPPEGMGVEDGTESIANQDPNLYGKV--------GDTFVKCGKCQACYPIDVEVLGRGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDR---------MNEARAKAMEPSRFG-------FDLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASN 811
            DLP  +   P SAL   PPE   V   +    ++DP  +              + KC KC A Y +D  VLG GR + CSVC N WFQ  DR   + +     ++  DR          N AR      +R         F +F+GN+P SV+E++LT +  +  +    S+  D+   SKGF    + SE +  + + +L+   I GR I V+    N
Sbjct:   63 DLP--KESEPDSAL---PPEQRSVARPSRPTHSRDPRRFESPPRFTPDPNAVYYTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKN 276
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A1F5B9W8_9BACT (RNA-binding protein n=1 Tax=Candidatus Aminicenantes bacterium RBG_13_63_10 TaxID=1797270 RepID=A0A1F5B9W8_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 9.670e-13
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 2 
Query:  578 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE-SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISA--SNPASRGGGG 835
            +++VGN+   VSE DL A F  +GQ+ S S+ KD+ S ES+GFG V+MAS+ +  KAI ALNG+E++GRN+ V  +   ++   R GGG
Sbjct:    2 NIYVGNLSRDVSESDLRAAFEPYGQIQSCSIIKDKFSGESRGFGFVEMASKEEADKAISALNGVELKGRNLTVNEARPRTDDGRRSGGG 90
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: UPI00199C0AE1 (RNA-binding protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI00199C0AE1)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-12
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 2 
Query:  578 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE--SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRG 826
            +++VGN+  +++E+DL+ +F  +G+VVS+ +  D+  ++ SKGFG V+M ++ +GQ AI ALNG E+ GRNI+V  S   PA  G
Sbjct:    2 NIYVGNLSWNLTEEDLSNMFAPYGEVVSAKIVTDKFNNNRSKGFGFVEMTNDTEGQAAIAALNGTEVDGRNIVVNESQPKPAGSG 86
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A523K038_9GAMM (RNA-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K038_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 3.730e-12
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 2 
Query:  578 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE-SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRGGGG 835
            +++VGN+P SVSE DL A F +FG+V S+++  D  S +SKGFG V+M S+++ ++AI ALN     GRNI V  +       GGGG
Sbjct:    2 NIYVGNLPYSVSEDDLRAAFADFGEVSSANVIMDRMSGQSKGFGFVEMPSDSEAEEAINALNDSAFNGRNIKVNQARPRNDHSGGGG 88
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A662A8X1_9BACT (RNA-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A662A8X1_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 4.610e-12
Identity = 34/76 (44.74%), Postives = 55/76 (72.37%), Query Frame = 2 
Query:  578 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE-SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKIS 802
            +++VGN+P S+SE +L+ +FG +G+V+S  +  D+ S  SKGFG V+M ++ D QKAI  LN  +I+GRN+ V ++
Sbjct:    2 NIYVGNLPYSISEDELSKVFGQYGEVISVKIITDKYSGRSKGFGFVEMLNDDDAQKAIDELNDSDIKGRNVKVNVA 77
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A2M8KZM0_9BACT (RNA-binding protein n=1 Tax=Candidatus Saccharibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1974869 RepID=A0A2M8KZM0_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 7.810e-12
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 2 
Query:  581 LFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKD-ESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRGGGG 835
            L+VG +  SV++K+L  +F   G+VVS+ + KD +S +SKGFG V+MA +ADGQKAI  L+G E+ GR+I+V  +        GGG
Sbjct:    5 LYVGGLAYSVTDKELEELFAQQGKVVSAVVIKDRDSGQSKGFGFVEMAEDADGQKAIKELDGKELSGRSIVVNQARPQEDRSSGGG 90
[Close]
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: I4AKB7_BERLS (RRM domain-containing RNA-binding protein n=3 Tax=Cytophagales TaxID=768507 RepID=I4AKB7_BERLS)

HSP 1 Score: 71.2 bits (173), Expect = 8.020e-12
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:  578 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKD-ESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRGGG 832
            +L+V N+P S+SE++L A+F   G V S+ +  D E+  S+GFG V+M SE DG+ AI  LNG+E++GR I VK  A     RGGG
Sbjct:    2 NLYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEELNGVELKGREIQVK-KAIPREDRGGG 86
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE1.300e-7553.52RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YSE2_9STRA2.180e-3140.37RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
I2CR05_NANGC3.240e-2735.75RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A2V3J103_9FLOR4.380e-1830.14Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
A0A1F5B9W8_9BACT9.670e-1347.19RNA-binding protein n=1 Tax=Candidatus Aminicenant... [more]
UPI00199C0AE11.120e-1243.53RNA-binding protein n=1 Tax=Gemmatimonadaceae bact... [more]
A0A523K038_9GAMM3.730e-1245.98RNA-binding protein n=1 Tax=Gammaproteobacteria ba... [more]
A0A662A8X1_9BACT4.610e-1244.74RNA-binding protein n=1 Tax=Bacteroidetes bacteriu... [more]
A0A2M8KZM0_9BACT7.810e-1246.51RNA-binding protein n=1 Tax=Candidatus Saccharibac... [more]
I4AKB7_BERLS8.020e-1247.67RRM domain-containing RNA-binding protein n=3 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig64contigF-serratus_M_contig64:259350..263615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue8.8e-63
Seed eggNOG ortholog2880.D7G7E1
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
Hectar predicted targeting categorychloroplast
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-04_003170.1
EC4.3.1.17,4.3.1.19
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons7
Model size1158
Cds size864
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931975.3800516-UTR-F-serratus_M_contig64:259349..2596091622931975.3800516-UTR-F-serratus_M_contig64:259349..259609Fucus serratus maleUTRF-serratus_M_contig64 259350..259609 -
1690964084.4787776-UTR-F-serratus_M_contig64:259349..2596091690964084.4787776-UTR-F-serratus_M_contig64:259349..259609Fucus serratus maleUTRF-serratus_M_contig64 259350..259609 -
1622931975.5213995-UTR-F-serratus_M_contig64:263581..2636151622931975.5213995-UTR-F-serratus_M_contig64:263581..263615Fucus serratus maleUTRF-serratus_M_contig64 263582..263615 -
1690964084.5686908-UTR-F-serratus_M_contig64:263581..2636151690964084.5686908-UTR-F-serratus_M_contig64:263581..263615Fucus serratus maleUTRF-serratus_M_contig64 263582..263615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931975.3944893-CDS-F-serratus_M_contig64:259609..2597301622931975.3944893-CDS-F-serratus_M_contig64:259609..259730Fucus serratus maleCDSF-serratus_M_contig64 259610..259730 -
1690964084.4957747-CDS-F-serratus_M_contig64:259609..2597301690964084.4957747-CDS-F-serratus_M_contig64:259609..259730Fucus serratus maleCDSF-serratus_M_contig64 259610..259730 -
1622931975.406853-CDS-F-serratus_M_contig64:260092..2601541622931975.406853-CDS-F-serratus_M_contig64:260092..260154Fucus serratus maleCDSF-serratus_M_contig64 260093..260154 -
1690964084.5068927-CDS-F-serratus_M_contig64:260092..2601541690964084.5068927-CDS-F-serratus_M_contig64:260092..260154Fucus serratus maleCDSF-serratus_M_contig64 260093..260154 -
1622931975.4251795-CDS-F-serratus_M_contig64:260515..2606111622931975.4251795-CDS-F-serratus_M_contig64:260515..260611Fucus serratus maleCDSF-serratus_M_contig64 260516..260611 -
1690964084.5175943-CDS-F-serratus_M_contig64:260515..2606111690964084.5175943-CDS-F-serratus_M_contig64:260515..260611Fucus serratus maleCDSF-serratus_M_contig64 260516..260611 -
1622931975.445093-CDS-F-serratus_M_contig64:260919..2610271622931975.445093-CDS-F-serratus_M_contig64:260919..261027Fucus serratus maleCDSF-serratus_M_contig64 260920..261027 -
1690964084.5283554-CDS-F-serratus_M_contig64:260919..2610271690964084.5283554-CDS-F-serratus_M_contig64:260919..261027Fucus serratus maleCDSF-serratus_M_contig64 260920..261027 -
1622931975.4655147-CDS-F-serratus_M_contig64:261611..2617131622931975.4655147-CDS-F-serratus_M_contig64:261611..261713Fucus serratus maleCDSF-serratus_M_contig64 261612..261713 -
1690964084.5374296-CDS-F-serratus_M_contig64:261611..2617131690964084.5374296-CDS-F-serratus_M_contig64:261611..261713Fucus serratus maleCDSF-serratus_M_contig64 261612..261713 -
1622931975.4831767-CDS-F-serratus_M_contig64:262224..2624091622931975.4831767-CDS-F-serratus_M_contig64:262224..262409Fucus serratus maleCDSF-serratus_M_contig64 262225..262409 -
1690964084.5470743-CDS-F-serratus_M_contig64:262224..2624091690964084.5470743-CDS-F-serratus_M_contig64:262224..262409Fucus serratus maleCDSF-serratus_M_contig64 262225..262409 -
1622931975.5030098-CDS-F-serratus_M_contig64:263391..2635811622931975.5030098-CDS-F-serratus_M_contig64:263391..263581Fucus serratus maleCDSF-serratus_M_contig64 263392..263581 -
1690964084.5576804-CDS-F-serratus_M_contig64:263391..2635811690964084.5576804-CDS-F-serratus_M_contig64:263391..263581Fucus serratus maleCDSF-serratus_M_contig64 263392..263581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig64.17305.1prot_F-serratus_M_contig64.17305.1Fucus serratus malepolypeptideF-serratus_M_contig64 259610..263581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig64.17305.1

>prot_F-serratus_M_contig64.17305.1 ID=prot_F-serratus_M_contig64.17305.1|Name=mRNA_F-serratus_M_contig64.17305.1|organism=Fucus serratus male|type=polypeptide|length=288bp
MAPAGYLVACLVLAVASTTYLFTDVTAFSAGMRATLGMPHDFASLSSSAV
PAPTCSSSAGRSSADLPARRRRLPSSALSMSPPEGMGVEDGTESIANQDP
NLYGKVGDTFVKCGKCQACYPIDVEVLGRGRVIECSVCKNTWFQSVDRAL
TLTQNFLMKDWSEDRMNEARAKAMEPSRFGFDLFVGNIPMSVSEKDLTAI
FGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRN
ILVKISASNPASRGGGGRGRGGRSGGGFRDGGNRGYS*
back to top

mRNA from alignment at F-serratus_M_contig64:259350..263615-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig64.17305.1 ID=mRNA_F-serratus_M_contig64.17305.1|Name=mRNA_F-serratus_M_contig64.17305.1|organism=Fucus serratus male|type=mRNA|length=4266bp|location=Sequence derived from alignment at F-serratus_M_contig64:259350..263615- (Fucus serratus male)
GTTCGATCTCCGATAGCCCCCCAGACTACCTCCGATGGCACCTGCGGGGT
ACTTGGTGGCGTGCCTCGTCCTAGCGGTGGCCTCAACAACATATCTGTTT
ACTGACGTGACAGCGTTTTCTGCAGGAATGCGAGCAACGCTGGGAATGCC
GCATGATTTCGCATCGCTTTCATCATCGGCAGTCCCAGCCCCTACTTGTA
GCTCTTCCGCGGGACGTTCATCAGGTGCAGTATCAGGCAACCACCAACAC
GAACTTTGCATGGTGCCATCGCTCCACTCAGCACAGCCCAAAACCTTGCG
ATTCGTGAGTTATTAGTCGCAAGGATCGGTCGTAGGCGGACGCACCGGGA
ATGGCGTTCGCTAGATACTGTAAGCCTAGCCCTCGACACGGTTCATGTTT
CGACATGTCTTATACTGTCCAACGTCTACCGTAACTATTATTTCTGAAAC
AAGGGCGATGGCCATGTGAACAACCCGCCTTATGTATCCTGGATTGCTTC
CATAAGATCCCTCCAAGGGTGGATACGGCATGACATACTTAATGGCTAGT
ATTTCACACAGGAAAACTAAACACTCTATAGCAGCTACGACCTGCAGCTT
TTTGTCGCTACGGGTTGGAGCTTTTTGTCGGCTGTATGCTCTTTTGCTCG
AAGAGGGAGTCGCGGTTGATGGGTTTCCGTCGTCAGGTCGATGTGTTTCC
GTCGTCAGGTCGAGTCACGGCAGGCGTTTCGTCATGCAGGCGTCGGAAGG
AACAACCGAGTCGTAGCGTCAACCCCCCAGACCTAGGTTTTGCCATGGAG
ATACAGCTTATTACAAAAATATATATGTCGATGTCATGTGTGTGAAGATA
TGTGTATGTCATGTGTACTTGATGAGGAGGGTCCGTCCAGTTGCCCCGGT
TTACTTAACAAAAACAGTTTTTTTATGATATCTTTCTACTGATACCATCG
CTGGTTGTACCATCCTGCCCAGAGACCACCCATTATATTGCATCCATGTA
CAGCAGAAGCCCAAGAGGGATGCTAATTCTTTTACTCAACCTACAGAGTG
AGAGTAACGTCGGCCCTTTGCGCCGCACAAAGAGTTGAAGCAACATTTGT
TAAGGGTGTTGGATCACCTCGAGAAAGGGAACCTGCGAGTCTTGTGGTAT
CATAGTCGACACGACACAGCTCTCCGCCCGTGCCTCTTTGTCCAACCGCT
CTGCAGCGGACTTGCCCGCCCGCAGGCGACGGCTACCGTCCTCGGCGCTG
TCGATGTCGCCCCCGGAAGGCATGGGGGTGGAGGACGGGACAGAATCAAT
CGCGAACCAAGACCCGAACCTGTACGGGAAGGTCGGGGATACTTTCGTCA
AGTGCGGGAAGTGTCAGGCGTGCTACCCTATCGACGTGGAGGTGTGGAAC
CTTGCGCGCGACGCGCTCATCGGACCACTCTGGCTGCTACTACCGTTGCT
GTTGCTGTTGGGGATGGGCTTGACGAGGAGGCTTTGTATTCAAAGACTGT
GATTACCGTGTGTTAGCACCCTTCCTAACTGATTTTCTCAGCGACTACGC
AGGGAGTGCGACCACACGCTGCGGTTTGGAAACGTCGCGCTTATGATGCT
TTACCGAGACATACGAGTAGCTTGTTGCGTTGGTGCTGTGTGTGTACTGG
ACCTGTGGAGAAGTTTTTTCTTGAGGGGGGATGGGGGGGGGGGGATATCG
TGATGCCCATGTGCCTACTATTCCATTATGATCCCACCATTACTCACGAC
TAATCTTGAACTATTGTATCGTGGATAAACCCCCGGCCTTCGACAGTGGA
GTCATGGCACACGACGTGAAGTAATTGCTTGTCTGGTTCTCGGGGGGGTC
GGGGGGGGGGTGCATGCTATTCTGACCCGCGTGTGTCCCCGCCTAATGAC
AGGTGCTCGGCAGGGGTCGGGTTATCGAGTGCTCCGTGTGCAAGAACACA
TGGTTCCAGTCGGTTGACCGGGCGCTCACACTCACGCAGAACTTCTTGAT
GAAGGCACGTCCAATTTAGCTTGGCTTCAGTACGCACGTCCAATTCATCC
TGGCTTCAGTATGCACGTCCAATTTATCTTGGCTTCAGTACGAAAGTAGT
CGTGAGTTGGAGAGCTGGTACTACTACTGACTGAAGATGCCCTGGTTTTG
GAGGAACTGTGGCGAGTGGTATCAATCATTTCGTGTGTGTGTGTGTGTGT
GTGTGTGTATATATGTGTTTGTGCGCGCGCGTGTGTGTGTATAGACTATG
TGTTTGTGCGCGTGTATGTGTGTATATGTGTTTGAGCGCTAGCGTGTGTG
TGTGACCCTGAGAAGAACACTAAAGCGTGCAAGACACCCACTTGCTTTTC
GAGTAACGTAAACCAATGCCGTCATGGCCGCCGAAGAATTTCGCCCCAGC
TTGCACAGCAAGCGGTCAGTCCTTAAAATAGTAAAAGGTGTGGTCAGGCC
GCCGGTTGGGGTTTCACGCGCTGGATGCACGTGGAGGCTTCTTAGCGCTC
AGTGAAAAGACGCACGTGCACCGCTCCTCCGCTCTGTTGGCGTACGACCA
CCTCTTTTTTTTTTTTTTTTTCTGTGCGATTTCTCCAGGACTGGTCTGAA
GACCGGATGAACGAGGCTCGGGCGAAGGCCATGGAGCCGTCGCGATTCGG
ATTCGACCTCTTTGTTGGCAATATCCCCATGTCTGTTAGCGAAAAGGTGA
CCGGTCCTGATGGCCGATCGTCGCCCAAGTATACGCAAGAGGAAGATCAT
CTTCCGAAGACACCGTTTGCCTTTTTAAGGCTTTTAAGGCTCTCAGTGGG
CGGCGGGTGTTGTACACACCCGATTTATTGCACGGCGGTTATATTTTGAC
TTGGTGGTCCACGTGGCGTGTTGAATTTGTGTATGTATATCTTTGTAAAG
AAGAAAAAAACGAACAAAAATTCTTCTTTTTATTATTAATAAGGAATAAA
TCGATGGATCCTCTTGGACTTTTTTCTTCTTCTTTTTCTTATCGGTCGGC
ACAGGACCTGACGGCGATCTTCGGCAACTTCGGCCAGGTGGTGAGCTCTT
CCCTCGCCAAGGACGAGTCGGACGAGTCCAAGGGTTTCGGGGTCGTGAAG
GTGGCCAAGGATCTCGTACTCTCTCTTTTAAGTCGGTCGCGCATAACCCT
TACAGTAGCGCTCTATCGTAGACGAGATCTTTCTGTACATCACAGGTATT
AATATTTTAGTGTTCGGATGGAAAATGAGCAACCTGGGGCTGGCGTGAGA
GGGGAGGGAGAGATCCTGCGCGCGTAAGTTGTTCTGATTGGCGAGGAAGA
CGTGATTATCTATTTAAACGTATTCCCAAAAAAGTATCACAGGCCATTTT
TTTCGGACGGTGAAGTAAAACGTTGGTTTCAGCCAATTGTGCCCTACCTC
GCGTAAAAGATCGCTCGAATCTGACGTCGGGCTGATCCTTTTTTTACATT
ATTTTTTCCAGATGGCATCTGAAGCCGACGGGCAGAAGGCGATCGGGGCA
CTCAACGGCATGGAGATTCAAGGGTAAGTCGAGATTCCCTCCCAAGTCTC
GTATGTGCAGGCGTTTCGTCATCATTTGTCCACGATTCCTCTTGGGCGAG
TAGCGAGCGCGCGCCTCTACACAAACCTGTCCTTGGCGTAGTAGGCATGC
TACTTTGCTGGCCACTGTTTCTGCGAAATGTTTTCCAGTTTTCCACGTCG
ATGGTACTCGACGTTGTCGCCAAGATTATCATGATGCACCTACCAGTGCG
CGCGTCGAACGAACGAACACAACTGGTTCCTCTCAACTCTAGAGCCGCTC
TGTGGGGGATGCCGATTTATGTCGAGCTGCCAGTCCCGTGGGCCTTTAAC
TGACCAACGTGTACCCCGGCGGTGGTTGTCGTCAGGAGGAACATCTTGGT
GAAGATCAGCGCCTCCAATCCAGCCTCCAGGGGAGGAGGCGGTCGAGGTC
GAGGAGGGCGGAGTGGAGGAGGCTTTCGAGATGGGGGGAACAGGGGGTAC
TCATGAGTACCGTGGTGACTTGTGCCCGGAGAGTAGTGAACCTAAACGTT
CCGCGGTGTTTGGCAGAAATAAAGTGGGGCGTCTTTTGGACAAAATATAT
TATAAAGTTAGAGAGGACGGGGGGAGTAGCGTATTCTGTGCCTAACTCAA
ATCAGAACGGTCGACGGGCCTATCGTGTTTTCTCAGGTGTGTTTACGGGT
TTCATGAAGCTTGTGTGTGTGCGCCCCCGGGGCCCGGGCGTTTTCTGAAA
TCATGAGCCGGAGGCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig64:259350..263615-

>mRNA_F-serratus_M_contig64.17305.1 ID=mRNA_F-serratus_M_contig64.17305.1|Name=mRNA_F-serratus_M_contig64.17305.1|organism=Fucus serratus male|type=CDS|length=1728bp|location=Sequence derived from alignment at F-serratus_M_contig64:259350..263615- (Fucus serratus male)
ATGGCACCTGCGGGGTACTTGGTGGCGTGCCTCGTCCTAGCGGTGGCCTC
AACAACATATCTGTTTACTGACGTGACAGCGTTTTCTGCAGGAATGCGAG
CAACGCTGGGAATGCCGCATGATTTCGCATCGCTTTCATCATCGGCAGTC
CCAGCCCCTACTTGTAGCTCTTCCGCGGGACGTTCATCAGATGGCACCTG
CGGGGTACTTGGTGGCGTGCCTCGTCCTAGCGGTGGCCTCAACAACATAT
CTGTTTACTGACGTGACAGCGTTTTCTGCAGGAATGCGAGCAACGCTGGG
AATGCCGCATGATTTCGCATCGCTTTCATCATCGGCAGTCCCAGCCCCTA
CTTGTAGCTCTTCCGCGGGACGTTCATCAGCGGACTTGCCCGCCCGCAGG
CGACGGCTACCGTCCTCGGCGCTGTCGATGTCGCCCCCGGAAGGCATGGG
GGTGGAGGACGGGACAGAATCAATCGCGAACCAAGACCCGAACCTGTACG
GGAAGGTCGGGGATACTTTCGTCAAGTGCGGGAAGTGTCAGGCGTGCTAC
CCTATCGACGTGGAGCGGACTTGCCCGCCCGCAGGCGACGGCTACCGTCC
TCGGCGCTGTCGATGTCGCCCCCGGAAGGCATGGGGGTGGAGGACGGGAC
AGAATCAATCGCGAACCAAGACCCGAACCTGTACGGGAAGGTCGGGGATA
CTTTCGTCAAGTGCGGGAAGTGTCAGGCGTGCTACCCTATCGACGTGGAG
GTGCTCGGCAGGGGTCGGGTTATCGAGTGCTCCGTGTGCAAGAACACATG
GTTCCAGTCGGTTGACCGGGCGCTCACACTCACGCAGAACTTCTTGATGA
AGGTGCTCGGCAGGGGTCGGGTTATCGAGTGCTCCGTGTGCAAGAACACA
TGGTTCCAGTCGGTTGACCGGGCGCTCACACTCACGCAGAACTTCTTGAT
GAAGGACTGGTCTGAAGACCGGATGAACGAGGCTCGGGCGAAGGCCATGG
AGCCGTCGCGATTCGGATTCGACCTCTTTGTTGGCAATATCCCCATGTCT
GTTAGCGAAAAGGACTGGTCTGAAGACCGGATGAACGAGGCTCGGGCGAA
GGCCATGGAGCCGTCGCGATTCGGATTCGACCTCTTTGTTGGCAATATCC
CCATGTCTGTTAGCGAAAAGGACCTGACGGCGATCTTCGGCAACTTCGGC
CAGGTGGTGAGCTCTTCCCTCGCCAAGGACGAGTCGGACGAGTCCAAGGG
TTTCGGGGTCGTGAAGGACCTGACGGCGATCTTCGGCAACTTCGGCCAGG
TGGTGAGCTCTTCCCTCGCCAAGGACGAGTCGGACGAGTCCAAGGGTTTC
GGGGTCGTGAAGATGGCATCTGAAGCCGACGGGCAGAAGGCGATCGGGGC
ACTCAACGGCATGGAGATTCAAGGATGGCATCTGAAGCCGACGGGCAGAA
GGCGATCGGGGCACTCAACGGCATGGAGATTCAAGGGAGGAACATCTTGG
TGAAGATCAGCGCCTCCAATCCAGCCTCCAGGGGAGGAGGCGGTCGAGGT
CGAGGAGGGCGGAGTGGAGGAGGCTTTCGAGATGGGGGGAACAGGGGGTA
CTCATGAGAGGAACATCTTGGTGAAGATCAGCGCCTCCAATCCAGCCTCC
AGGGGAGGAGGCGGTCGAGGTCGAGGAGGGCGGAGTGGAGGAGGCTTTCG
AGATGGGGGGAACAGGGGGTACTCATGA
back to top