prot_F-serratus_M_contig64.17305.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig64.17305.1
Unique Name	prot_F-serratus_M_contig64.17305.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	288

Homology

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.470e-76
Identity = 137/256 (53.52%), Postives = 181/256 (70.70%), Query Frame = 0

Query:   10 CLVLAVASTTYLFTDVTAFSAGMRATLGM-PHDFASLSSSAV--PAPTCSSSAGRSSADLPARRRRLPSSALSMSPPEGMG-VEDGTESIANQDPNLYGKVGDTFVKCGKCQACYPIDVEVLGRGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDRMNEARAKAMEPSRFGFDLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPA 261
            CLVLA  +T  +   V AFS G+R  +   PHD + ++SS+   P P   ++A  + +           +ALSM+PP   G  E   +     DP+L G  GDT+VKCGKCQACYP++++VLGRGR+IECSVC N WFQ+ +RALTLT+NFLMKDW+EDR+  A A+A + +  GF+LFVGNIP SVSEKDL AIFGNFG+V S++L  DE+ +S+G+G VKM +E DG+KAI ALNG+EIQGR++LVK+ ASN A
Sbjct:   41 CLVLAALTTMAVIPGVGAFSGGLRVAITQQPHDCSMVASSSTVSPRPLNPAAAAVTPSGXXXXXXXXSPTALSMAPPMDFGGAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRV-AATAEAAK-NFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSA 294

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A835YSE2_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSE2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.480e-32
Identity = 65/161 (40.37%), Postives = 98/161 (60.87%), Query Frame = 0

Query:  106 VGDTFVKCGKCQACYPIDVEVLG-RGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDRMNEARAKAMEPSRFG-----------FDLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVK 254
            +GD ++KCG C A Y ID ++LG RGR ++CSVC ++WFQ+ +R   L   F MKD+ E+++   +A   +    G             +FVGN+P S  EKDL+ +F + G+VVS+ + KD  D SKG+G V+M ++A GQ A+  L+  +I GR I V+
Sbjct:    1 MGDPYIKCGSCSAVYTIDPQMLGERGRRVQCSVCDHSWFQASERVFRLGNGFSMKDFPEEKLAAIKANIEQGLTAGGAPKGNGRKGEMTMFVGNLPFSFGEKDLSDLFADHGEVVSAVIIKDNMDRSKGYGFVEMLNKAQGQAAMDTLHNYQINGRPITVR 161

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 119 bits (297), Expect = 4.190e-28
Identity = 69/193 (35.75%), Postives = 111/193 (57.51%), Query Frame = 0

Query:   81 SPPEGMGVEDGTESIANQDPNLYGKVGDTFVKCGKCQACYPIDVEVLG-RGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDRMNEARAKAMEPSRFGFD---------LFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASR 263
            SP   +GV D   +    DPN+       FV+CG+C A Y +  +++   G  ++C VC +TWFQ+ +R   L+  +++KD+ ED + E  A+ +  +R   D         +FVGN+P S++E D+  +F   G VVS ++ KD+ + SKGFG V+MA + +G++AI AL+G E+ GR I V++  S    R
Sbjct:   86 SPAAAVGVGD---AAPKSDPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPED-LKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPR 269

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 93.6 bits (231), Expect = 9.850e-19
Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 0

Query:   65 DLPARRRRLPSSALSMSPPEGMGVEDGTESIANQDPNLYGKV--------GDTFVKCGKCQACYPIDVEVLGRGRVIECSVCKNTWFQSVDRALTLTQNFLMKDWSEDR---------MNEARAKAMEPSRFG-------FDLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASN 259
            DLP  +   P SAL   PPE   V   +    ++DP  +              + KC KC A Y +D  VLG GR + CSVC N WFQ  DR   + +     ++  DR          N AR      +R         F +F+GN+P SV+E++LT +  +  +    S+  D+   SKGF    + SE +  + + +L+   I GR I V+    N
Sbjct:   63 DLP--KESEPDSAL---PPEQRSVARPSRPTHSRDPRRFESPPRFTPDPNAVYYTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKN 276

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A1F5B9W8_9BACT (RNA-binding protein n=1 Tax=Candidatus Aminicenantes bacterium RBG_13_63_10 TaxID=1797270 RepID=A0A1F5B9W8_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 3.890e-13
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0

Query:  182 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE-SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISA--SNPASRGGGG 267
            +++VGN+   VSE DL A F  +GQ+ S S+ KD+ S ES+GFG V+MAS+ +  KAI ALNG+E++GRN+ V  +   ++   R GGG
Sbjct:    2 NIYVGNLSRDVSESDLRAAFEPYGQIQSCSIIKDKFSGESRGFGFVEMASKEEADKAISALNGVELKGRNLTVNEARPRTDDGRRSGGG 90

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: UPI00199C0AE1 (RNA-binding protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI00199C0AE1)

HSP 1 Score: 75.1 bits (183), Expect = 4.350e-13
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 0

Query:  182 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE--SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRG 264
            +++VGN+  +++E+DL+ +F  +G+VVS+ +  D+  ++ SKGFG V+M ++ +GQ AI ALNG E+ GRNI+V  S   PA  G
Sbjct:    2 NIYVGNLSWNLTEEDLSNMFAPYGEVVSAKIVTDKFNNNRSKGFGFVEMTNDTEGQAAIAALNGTEVDGRNIVVNESQPKPAGSG 86

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A523K038_9GAMM (RNA-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K038_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 1.620e-12
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0

Query:  182 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE-SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRGGGG 267
            +++VGN+P SVSE DL A F +FG+V S+++  D  S +SKGFG V+M S+++ ++AI ALN     GRNI V  +       GGGG
Sbjct:    2 NIYVGNLPYSVSEDDLRAAFADFGEVSSANVIMDRMSGQSKGFGFVEMPSDSEAEEAINALNDSAFNGRNIKVNQARPRNDHSGGGG 88

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A662A8X1_9BACT (RNA-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A662A8X1_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 2.020e-12
Identity = 34/76 (44.74%), Postives = 55/76 (72.37%), Query Frame = 0

Query:  182 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKDE-SDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKIS 256
            +++VGN+P S+SE +L+ +FG +G+V+S  +  D+ S  SKGFG V+M ++ D QKAI  LN  +I+GRN+ V ++
Sbjct:    2 NIYVGNLPYSISEDELSKVFGQYGEVISVKIITDKYSGRSKGFGFVEMLNDDDAQKAIDELNDSDIKGRNVKVNVA 77

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: A0A2M8KZM0_9BACT (RNA-binding protein n=1 Tax=Candidatus Saccharibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_47_8 TaxID=1974869 RepID=A0A2M8KZM0_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 3.460e-12
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 0

Query:  183 LFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKD-ESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRGGGG 267
            L+VG +  SV++K+L  +F   G+VVS+ + KD +S +SKGFG V+MA +ADGQKAI  L+G E+ GR+I+V  +        GGG
Sbjct:    5 LYVGGLAYSVTDKELEELFAQQGKVVSAVVIKDRDSGQSKGFGFVEMAEDADGQKAIKELDGKELSGRSIVVNQARPQEDRSSGGG 90

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BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Match: I4AKB7_BERLS (RRM domain-containing RNA-binding protein n=3 Tax=Cytophagales TaxID=768507 RepID=I4AKB7_BERLS)

HSP 1 Score: 71.2 bits (173), Expect = 3.560e-12
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 0

Query:  182 DLFVGNIPMSVSEKDLTAIFGNFGQVVSSSLAKD-ESDESKGFGVVKMASEADGQKAIGALNGMEIQGRNILVKISASNPASRGGG 266
            +L+V N+P S+SE++L A+F   G V S+ +  D E+  S+GFG V+M SE DG+ AI  LNG+E++GR I VK  A     RGGG
Sbjct:    2 NLYVSNLPYSISEEELEAVFSELGVVTSTKIITDRETRRSRGFGFVEMESEEDGEAAIEELNGVELKGREIQVK-KAIPREDRGGG 86

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig64.17305.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K2C5_9PHAE	1.470e-76	53.52	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YSE2_9STRA	2.480e-32	40.37	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
I2CR05_NANGC	4.190e-28	35.75	RRM domain-containing protein (Fragment) n=3 Tax=M...	[more]
A0A2V3J103_9FLOR	9.850e-19	30.14	Putative RNA-binding protein RbpE n=1 Tax=Gracilar...	[more]
A0A1F5B9W8_9BACT	3.890e-13	47.19	RNA-binding protein n=1 Tax=Candidatus Aminicenant...	[more]
UPI00199C0AE1	4.350e-13	43.53	RNA-binding protein n=1 Tax=Gemmatimonadaceae bact...	[more]
A0A523K038_9GAMM	1.620e-12	45.98	RNA-binding protein n=1 Tax=Gammaproteobacteria ba...	[more]
A0A662A8X1_9BACT	2.020e-12	44.74	RNA-binding protein n=1 Tax=Bacteroidetes bacteriu...	[more]
A0A2M8KZM0_9BACT	3.460e-12	46.51	RNA-binding protein n=1 Tax=Candidatus Saccharibac...	[more]
I4AKB7_BERLS	3.560e-12	47.67	RRM domain-containing RNA-binding protein n=3 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 182..254 e-value: 1.5E-19 score: 80.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 183..251 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 181..258 score: 18.035
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 171..284 e-value: 1.8E-23 score: 85.1
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 168..267
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..287
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..15
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 183..286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig64	contig	F-serratus_M_contig64:259610..263581 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig64.17305.1	mRNA_F-serratus_M_contig64.17305.1	Fucus serratus male	mRNA	F-serratus_M_contig64 259350..263615 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig64.17305.1 ID=prot_F-serratus_M_contig64.17305.1|Name=mRNA_F-serratus_M_contig64.17305.1|organism=Fucus serratus male|type=polypeptide|length=288bp
MAPAGYLVACLVLAVASTTYLFTDVTAFSAGMRATLGMPHDFASLSSSAV
PAPTCSSSAGRSSADLPARRRRLPSSALSMSPPEGMGVEDGTESIANQDP
NLYGKVGDTFVKCGKCQACYPIDVEVLGRGRVIECSVCKNTWFQSVDRAL
TLTQNFLMKDWSEDRMNEARAKAMEPSRFGFDLFVGNIPMSVSEKDLTAI
FGNFGQVVSSSLAKDESDESKGFGVVKMASEADGQKAIGALNGMEIQGRN
ILVKISASNPASRGGGGRGRGGRSGGGFRDGGNRGYS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf