mRNA_F-serratus_M_contig6329.17214.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6329.17214.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI) HSP 1 Score: 322 bits (825), Expect = 2.080e-100 Identity = 178/328 (54.27%), Postives = 218/328 (66.46%), Query Frame = 3
Query: 363 NLEGLSADEVEERLIAAGILHRDGAV--FDVDELGGGGVYNEVDIPDGFEACQILVDSLGFDETEINYLRDKYAPLRGEPWYRREPIPG-SKIGKKVLDIFFLKETLPELLNLLLGDEKDGG-VGLSTEQVRGMLLRTPALAGVEPFDAGEVVSYMRGELGFNGKGQLAAALAGCPPMLMYNAQNNLHKK-----------VQYYRDALSWSTEDIRSLMAEYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPKRLKAVVTYLRKVLDIPWGGVADILRQNPKTCSLEAEANLAPLRHFFERELFVEDSARIG 1301
+LEGLSADEVE+RLIAAGIL DGA F+ D+ GG GVYNE+++ DG EACQIL + LGFDE I +LR KY PLRGE WYRREP G SK GKK LD++F++ETLP+LL+LLLG+E +GG VGL +QVR ML TP+L G++ DA +V Y+R ELG +GKGQLA+ALAGCPPMLMY+ +NL K V YYR++L+W+ ED+ +++AEYP VRPKRLKAVV Y KVL+IP G+A +L Q+P+TC LEAEANLAPLR FFERELFVE S G
Sbjct: 152 SLEGLSADEVEQRLIAAGILRGDGAEIDFEEDDGGGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGVGLDRKQVREMLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVEASTVNG 479
BLAST of mRNA_F-serratus_M_contig6329.17214.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE) HSP 1 Score: 307 bits (787), Expect = 1.780e-93 Identity = 207/382 (54.19%), Postives = 247/382 (64.66%), Query Frame = 3
Query: 363 NLEGLSADEVEERLIAAGILHRDGAV--FDVDELGGGGVYNEVDIPDGFEACQILVDSLGFDETEINYLRDKYAPLRGEPWYRREPIPG-SKIGKKVLDIFFLKETLPELLNLLLGDEKDGG-VGLSTEQVRGMLLRTPALAGVEPFDAGEVVSYMRGELGFNGKGQLAAALAGCPPMLMYNAQNNLHKKVQYYRDALSWSTEDIRSLMAEYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRPKRLKAVVTY------------------LRKVLDIPWGGVADILRQNPKTCSLEAEANLAPLRHFFERELFVEDSARIGRLVCKFPRLLLQDVETQLKPRAEEFRKALGLEGMEPVPPPVRSRPKR 1442
+LEGLSADEVE RLIAAGIL DGA FD D+ G GVYNE+++ DG EAC+IL + LGFDE I YLR KY PLRGE WYRREP G SK GKK LD++F++ETLP+LL+LLLG+E +GG +GL +Q RG P D+ + ++ V YYR+AL+W++ED+ +++AEYP XXXXXXXXXXXXXXXXXXXXXXXX VRPKRLKAVV L VL+IP G+A +L Q+P+ C LEAEANLAPLR FFERELFVED++RIG LV KFPRLL QDV+TQL PRAEEFRKA+GLEG+EP+PP VR RPKR
Sbjct: 228 SLEGLSADEVERRLIAAGILRGDGAEIDFDEDDDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGIGLDRKQARG------------PADSSHSEQFW----------------------------GDVDADVSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVIDXXXXXXXXXXXXXXXXXXXXXXXXEVRPKRLKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKAMGLEGLEPLPPRVRLRPKR 569
BLAST of mRNA_F-serratus_M_contig6329.17214.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.290e-37 Identity = 108/362 (29.83%), Postives = 164/362 (45.30%), Query Frame = 3
Query: 486 DIPDGFEACQILVDSLGFDETEINYLRDKYAPLRGEPWYRREPIPGSKIGKKVLDIFFLKETLPELLNLLLGDEKDGGVGLSTEQVRGMLLRTPALAGVEPFDAGEVVSYMRGELGFNGKGQLAAALAGCPPMLMYNAQNNLHKKVQYYRDALSWSTEDIRSLMAEYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---RPKRLKAVVTYLRK------------------------------------VLDIPWGGVADILRQNPKTCSLEAEANLAPLRHFFERELFVEDSARIGRLVCKFPRLLLQDVETQLKPRAEEFRKALGLEGMEPVPPPVRSRPKRGNNR 1454
D G EA + L++ +G + L +++APLRGE WYRR + GKKVLD++FL++TLP+L+ LL E+ +G S E++ P+L G E + + Y+R G G+L AL+ CP +L+Y+A+ NL K Y L + +R LM +YP V + KR+KA++ YL+K VL + ++ +P+ +EAE +LAPLRHFFE +L + D+ RIG +V K P++L D+ET+L+P+A + R LG+ P P RP R R
Sbjct: 58 DFDGGAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR------RNGKKVLDVYFLEDTLPDLVELLEAPEE---LGWSQEEMAAAFAVVPSLLGREAAEVAASLRYVREXXXXEG-GELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGEGKSSIASLDVLLDSGMTTHMACQLVVAEPELVAEAKGKRVKALMHYLQKWRRLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIRAKLGIPDDAAPPRPRAPRPTRAEQR 409 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6329.17214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6329.17214.1 >prot_F-serratus_M_contig6329.17214.1 ID=prot_F-serratus_M_contig6329.17214.1|Name=mRNA_F-serratus_M_contig6329.17214.1|organism=Fucus serratus male|type=polypeptide|length=483bp MIDEAEASEGWGGIPSPVRIVSDYKVNSGSDADAEVDHVPASSDCTEITDback to top mRNA from alignment at F-serratus_M_contig6329:18582..23397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6329.17214.1 ID=mRNA_F-serratus_M_contig6329.17214.1|Name=mRNA_F-serratus_M_contig6329.17214.1|organism=Fucus serratus male|type=mRNA|length=4816bp|location=Sequence derived from alignment at F-serratus_M_contig6329:18582..23397+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6329:18582..23397+ >mRNA_F-serratus_M_contig6329.17214.1 ID=mRNA_F-serratus_M_contig6329.17214.1|Name=mRNA_F-serratus_M_contig6329.17214.1|organism=Fucus serratus male|type=CDS|length=2898bp|location=Sequence derived from alignment at F-serratus_M_contig6329:18582..23397+ (Fucus serratus male)back to top |