mRNA_F-serratus_M_contig632.17187.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig632.17187.1
Unique NamemRNA_F-serratus_M_contig632.17187.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig632.17187.1 vs. uniprot
Match: A0A6H5KRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA3_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.930e-42
Identity = 95/219 (43.38%), Postives = 121/219 (55.25%), Query Frame = 2 
Query:  149 NSSSIGNLSKKETPATENGAESDAKGAKIAAAMRTELQSSCLGGSVDGDN-FSDGYIYKDPAPLKWRIFEAVAKTNGQRAFARYWSTLRNFLRGWIPRSDLDEELIASLGAENVHLHNELVLCLINNAHCRYIPAELMSQVPPSCRSAVVH---------------------------------GMRTTEAPPPASPSKPSPGATASLPFQGKRKEGFL 703
            NS  +  + +   P + N   S   G  +A A+  EL ++  GG+  G N  +D ++Y+DP  LKW+IFEAVAK NGQRAF  YWS LR+F+ GW+ R  LDE L ASLGA+N+HLHNEL+LCL+NNA CRY+PA+L+SQVP S R  VVH                                        PP  +    +  A ASLPFQGKR EG L
Sbjct:   16 NSDRLVKVEQPTVPRSSNTGSSADHGVSMAEAVAAELAAAETGGTGGGQNAVTDEHLYQDPGSLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLSRGGLDEALDASLGADNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVHTTAXXXXXXXXXXXXXXXXXXXXXXXXXXPVLXXXXXXXXPPCGNSGLSNAAAAASLPFQGKRAEGLL 234
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BLAST of mRNA_F-serratus_M_contig632.17187.1 vs. uniprot
Match: D8LER5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER5_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.420e-41
Identity = 76/123 (61.79%), Postives = 96/123 (78.05%), Query Frame = 2 
Query:  233 IAAAMRTELQSSCLGGSVDGDN-FSDGYIYKDPAPLKWRIFEAVAKTNGQRAFARYWSTLRNFLRGWIPRSDLDEELIASLGAENVHLHNELVLCLINNAHCRYIPAELMSQVPPSCRSAVVH 598
            +A A+  EL ++  GG+  G N  +D ++Y+DPA LKW+IFEAVAK NGQRAF  YWS LR+F+ GW+PR  LDE L ASLGA+N+HLHNEL+LCL+NNA CRY+PA+L+SQVP S R  VVH
Sbjct:    1 MAEAVAAELAAAETGGTGGGQNAVTDEHLYQDPASLKWKIFEAVAKANGQRAFETYWSALRDFMHGWLPRGGLDEALDASLGADNLHLHNELILCLLNNARCRYLPADLVSQVPASFRGKVVH 123
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig632.17187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRA3_9PHAE1.930e-4243.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LER5_ECTSI1.420e-4161.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig632contigF-serratus_M_contig632:129088..134148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size963
Cds size960
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig632.17187.1prot_F-serratus_M_contig632.17187.1Fucus serratus malepolypeptideF-serratus_M_contig632 129088..134147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931952.1305711-CDS-F-serratus_M_contig632:129087..1296671622931952.1305711-CDS-F-serratus_M_contig632:129087..129667Fucus serratus maleCDSF-serratus_M_contig632 129088..129667 -
1690964073.3262558-CDS-F-serratus_M_contig632:129087..1296671690964073.3262558-CDS-F-serratus_M_contig632:129087..129667Fucus serratus maleCDSF-serratus_M_contig632 129088..129667 -
1622931952.149356-CDS-F-serratus_M_contig632:133767..1341471622931952.149356-CDS-F-serratus_M_contig632:133767..134147Fucus serratus maleCDSF-serratus_M_contig632 133768..134147 -
1690964073.3434052-CDS-F-serratus_M_contig632:133767..1341471690964073.3434052-CDS-F-serratus_M_contig632:133767..134147Fucus serratus maleCDSF-serratus_M_contig632 133768..134147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931952.161228-UTR-F-serratus_M_contig632:134147..1341481622931952.161228-UTR-F-serratus_M_contig632:134147..134148Fucus serratus maleUTRF-serratus_M_contig632 134148..134148 -
1690964073.362255-UTR-F-serratus_M_contig632:134147..1341481690964073.362255-UTR-F-serratus_M_contig632:134147..134148Fucus serratus maleUTRF-serratus_M_contig632 134148..134148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig632.17187.1

>prot_F-serratus_M_contig632.17187.1 ID=prot_F-serratus_M_contig632.17187.1|Name=mRNA_F-serratus_M_contig632.17187.1|organism=Fucus serratus male|type=polypeptide|length=320bp
MRKNVSLGGSKPMKSTTSSHFSSSSSSSVTGEIKKLIKTEDNNLMKRDAN
SSSIGNLSKKETPATENGAESDAKGAKIAAAMRTELQSSCLGGSVDGDNF
SDGYIYKDPAPLKWRIFEAVAKTNGQRAFARYWSTLRNFLRGWIPRSDLD
EELIASLGAENVHLHNELVLCLINNAHCRYIPAELMSQVPPSCRSAVVHG
MRTTEAPPPASPSKPSPGATASLPFQGKRKEGFLATKMEVVRKDAPPTAR
EAKVRGKAGGAFAVAAAPEGGNSLREGLSGGGLRPPALDSRDGSCYSRSL
ASLSSAKKQAETKPKPAVGG
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mRNA from alignment at F-serratus_M_contig632:129088..134148-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig632.17187.1 ID=mRNA_F-serratus_M_contig632.17187.1|Name=mRNA_F-serratus_M_contig632.17187.1|organism=Fucus serratus male|type=mRNA|length=5061bp|location=Sequence derived from alignment at F-serratus_M_contig632:129088..134148- (Fucus serratus male)
GATGCGGAAGAACGTCTCTCTGGGAGGATCGAAGCCGATGAAGAGCACGA
CATCTTCGCATTTCAGCAGCAGCAGCAGCAGCAGTGTGACCGGCGAGATA
AAGAAGCTGATCAAAACAGAGGATAATAACCTTATGAAGCGCGATGCCAA
CAGCAGCAGCATCGGCAATTTGAGCAAGAAAGAAACACCTGCAACAGAGA
ATGGGGCCGAGAGTGATGCCAAGGGTGCGAAGATTGCTGCGGCCATGAGA
ACAGAGCTTCAGTCGTCATGTCTGGGAGGCAGTGTCGACGGTGACAACTT
CTCTGATGGGTATATTTACAAAGACCCGGCGCCTCTCAAGTGGAGGATTT
TCGAGGCGGTGGCAAAGACGAACGGCCAGCGGTGAGAACCACAGCAGCCA
CACTGTACTCGAACCTGGTAAAAGCAGACCTTCGTTTTCGAGTCAAAGTC
AAGTACTGCAAGTAACTGCTGTAGTCCGCTGCTCCCCTTCCCAAGTCTTG
AATTATTGTGGTCGTCCTGTAGGATGTTTTAACCGATTAAGTTCGATACT
TCACTGTATTGTCAAATCACTCTAGAGCTAGGAAAAAGTTGGCAACGAGT
ACATCGTGCAATACTCCGTTCCGTTGTTCAACCCCTGATACAAAAAAGTA
TATATATATAAAGTATATTGTACAGTCAGTAGTATATTGAACGAATTGTA
CGTGTTACGCCGCACAGGGCCGCGCGTACTAGTCGACGTGCCTCAGATAG
TGGCCAGGACGAGGACAGGTGTTGAATCTTGCAAAGGGTCGTTTCCGACG
TAGAAGTCGACTCTAACTGGGGCATGGCCACTTCCGAGGTCGGGTATTGC
GTGTCCTGAACTCGAAATATGGGTGGTGGCAGTGGAAAACTGAAACTGGG
ACCTCAATTCTTCAATTTTCAGATAAATTTCGGTGTCTCAAGGACTGGCG
GTGGAACATATCGCACTTTGTATGTACCGTACCTAGACGACATGTACCGT
ATAACGGTGGGCTTATCCCCGACATTATACTGTTTAAAGAAAAAGTTGAC
CCAATGTTACCACCTATGGAAACACGTTTAATTAAATGCCATGAAGAGGT
TTTGTCCCTGTGCAGCCTATGATCCCACCTACGAAACGTTTTGACATTTC
CCCCCCCTGACTGGGTGATTCTAATTGATGCGTTCAGATTTTTCTTTAAA
TATAAGTTTTACTGGAGTATAGCTCTGCTATTATAGCAGCAGTAGACAGC
ATTACAACTATATTATTGATTATATAGACTAGTGTTGCCACAACAGACAG
TAAATTGCGTGTGGGAAAAGAGGGGCGCACAAAAATTGTACCATGGTGAT
ACAGACAGTAACGTGAAAAGGCAGCATCCGTTTCTGGAACTACCAACTAC
TCAGTATTACATTGGAAAGTCTTGCACACAGTAAACTGGACGTGGGAAAA
GCAGAGAGGCGCACGATAATTGTCCCATGGTGATTGATACCTGCCAAGGC
ATCACCCGTTTGAGACTAACTACCTTGAGGACGACTGGCCCTGTGCCGAC
GGGCTTTCGGCAATGAACGTCATCGGTACGCAACTGTCTTGTGTGGTCCA
ATAAACTCTATGGGGGTGTAAATAAATAAGTGGACGCCGCGGCGGAAATC
GGGAGGAATCCCGTACGTAAGCTCCAAATTCAGCCGGAGTATGGAGATGA
GAGCAGGCTGACGCGGGACGGGACAGCCGAACCTGCCTCGCAAGATGATA
TCATATTCTCAGCCGCGAACGGGAACAGGGCAAAAATAAAAAATTATTGT
TTCTGTGACCGGGAAAAAAACATTTTTCCTGTAACCGAGAAAAAATGAAT
TTTCCGGTGAATGGAAAATGAAATACGGTACTTGGTATGGAATACCAGTA
ATAATTTTCGTTTCCCTGTTGAGCTGACCACTATTATAGCAGAAATGACA
AAACCCTTTCGGGTTGATCTATACTATACTCTACTCTAAAAGTCATGACC
ACCGATACGTACGTACATGGAAAGGAAAATACAGTTACTCCATCCAGCAG
GGGAATTTGACTCAGTTCGACGGCCTCACACGAGGCCACTTTCCCTAGTC
GTCGTCCAAAGCACCGAGCGCTAGGATCCCGAAGGCACCGTTAGCACGAG
CACGAGCACTGTGTGTGTGTTTTTGTGTGTGTTGTGTGTTTTCTCCCCAT
TCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGCTACACAGGA
AGGTCACACAAGATTTCTCATCCACCTTCCTTCTCTGCGGTGCGTGCCTT
AATTTTTCTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCAACCGCG
AAGTCGAATTTGGTGTACTAATGATTTAATCGCTCTCCACTCGTTGGGCA
TTTATTTTATTTTTAGTGAGAAAAAATCCGTTTGCTGGGATCGAACTCAA
GTCCCAACGTGTCAGAAGGTTACGAGGTTACCTCTGAGCTACCGGGGCGA
CCTACGAATACTTAACTTGTACTGGTATACTGGTAGGAGCACTAGCGCTT
TTGATAGAGCTACAACATAGAGGCAGGCGTGGACGGTTCGAAGAGGGCAT
CGTACAGTATTAATAGTCATGAACTGCCGTTCGTTGTCTCATTGTCGCAT
TGTGTCCGTCCAAGCCTTGACTGCTGTCTTGCACCTGGTATTTCTTAAGA
AAAATCTGAAGGCATCTATCTATAAACCTTCAAAGCATCCACCTTCAGGA
AAAAAATTATCGTAAGATTTAGGTGGGAAGATTGGCTGTATGAATAGGGA
CAAAAGCTCTTGATGGTATCCAAAGGGGTTCCCCAATGTCGCCACGTAGC
GTCAACAACAGTATAATATCGGGGGGAGAAACCCACCGTTATACTGCACA
CTCACATCAATCGCCATACTGTACAATAACCAAAACGACACCTAAACGAC
AATGTTTGCAGCCTTTGATACCACCTAAACGTGTTTAAAGAAAAATCCGA
ACAGCACCTAGACTTTTTGAGCATCCCCCGTAGTAACGTTTAGGCGGGGT
CAAAGGCTGCAGTGACAAAAACCTCTTCATAGTATTAAACAGGTTCCCCA
ATGTAGATAACATTGGGTCATTTCCTCTACCGGGGGCGGATCTTTTAAAG
AAGGTCTAGGTGCATTCACATTTTTCTTTAAATAGACTACAACAACTGTA
GTATTAAATAGTAAGTCTAGATGTACAAAATGTTTGGAACCAAGAGTTCC
GGACTACAGGAGCAGTACAGCAGTAATATGGTCTTCGAGAAGGGTAAAGT
CAAACTTTAATATTGTTGAGTTATAGAGGTAAGGTTCATTGTTGTTGTTG
TTGTTGAAATATATTTATGGGAGGCAACCAAGGGGAAACTCGCGTAGTGG
GGTCAGAGAGAGAGAACTAACTGTACAGTAGTGCAGGAGTTGGAACTGGT
ATTTCATAGATGAATGAATCAATCACCATGCAGGGTAGGAACACTATTAT
CAGCGAAAGCAAGGGGTAAGAATCAACAAGAACGAGTGCAGATATGGTAG
GACGGGCAGCAGTGTTGATCACGGAGACATATTTGAGGAGGTGACGAAGG
GCTCTTTTCTTTCTGACTGAAGGGTTCTATTCTTCCTCAAGGGTTCTTTC
TGACTGAAGGGTTTCTATCATACGGTTGGTACGATATCCGGAAGAATGAA
ACCACCTCACGAACTCCTGGTTCTGAGTACGTACCAGCATTCGGTTCAGA
GCAAGGAGTATATTGTATCATGCACCATTTTTCAGCAGTAGTAGCTCTTG
TACATATCCGCCGGTACTTTTGACATGCCCACTTCATACCTATAGTGGGT
GTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCTTTGCCAAGG
CAGCGCTCGCTCGGAACTACCTTGAGGTTTACTGGCCCCGTGCCGGCGGA
CTCTCGGTAGTGAACGCCATCGGTACGCAGTTGCATGACCCGATAAACTT
GGGACTGACCCGATGGCGTATGGCGGTTATAAGTGAATAAATGGACGCCG
CCGCGGAACTCGGGTGGAATCCCGTAAGTAAGCTCCAGATAGTATGTATG
GAGATGAGCACGATGACGCGGGACGGGACTGTTGAACCCGTCTCGCGAGA
CCAAATTCTCAGGCACGAACGCGGACAGGGAAATATTCATTTTTCCTGTT
CAGCTGACCACGTGCAGGACTGGCAATCTTACCCAGTTGATCCATACGCT
TGTTACATGTGTGTCCATACATAATACTATTAGTCTATAGCAAGTACTTT
TGATATTATAGTTTTGACGAGAGCACACCCAGGTGGAATATATAATCGGT
AAGAAGGTAAATTAACGATTTGTTTTTAATGTTCGCTCGAATGTCGTCCC
GCGCATTTGTTCGATCGATCGCGGCGAAATCCGTCCCACGATGTCCGCCG
TTGTTTTGACTTCCCCGCGCGGAAATCGCAGGGCCTTCGCGAGGTACTGG
TCGACGCTCCGAAATTTCCTCCGGGGCTGGATCCCGCGCAGCGACCTGGA
CGAAGAGCTCATCGCGTCCCTCGGCGCCGAGAACGTCCATCTCCACAATG
AGCTCGTCCTGTGCCTCATCAACAACGCGCACTGCAGATATATCCCGGCG
GAGCTCATGAGCCAGGTGCCACCCTCCTGCCGCAGTGCGGTAGTCCATGG
CATGAGGACCACGGAGGCGCCGCCCCCCGCATCGCCCTCCAAGCCGTCGC
CAGGCGCCACCGCATCGCTGCCGTTCCAGGGCAAGCGGAAGGAAGGCTTT
TTGGCGACGAAGATGGAGGTGGTGCGCAAGGATGCTCCGCCAACGGCGCG
GGAGGCCAAAGTACGGGGGAAGGCAGGAGGAGCCTTCGCTGTCGCCGCCG
CACCGGAAGGGGGAAATAGTCTGCGAGAAGGGTTGAGCGGCGGTGGACTC
CGACCGCCTGCCCTAGACAGCAGGGATGGTAGCTGTTACAGTAGGAGCCT
CGCGTCTTTGTCATCCGCAAAAAAACAAGCGGAAACAAAGCCTAAACCGG
CGGTGGGAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig632:129088..134148-

>mRNA_F-serratus_M_contig632.17187.1 ID=mRNA_F-serratus_M_contig632.17187.1|Name=mRNA_F-serratus_M_contig632.17187.1|organism=Fucus serratus male|type=CDS|length=1920bp|location=Sequence derived from alignment at F-serratus_M_contig632:129088..134148- (Fucus serratus male)
ATGCGGAAGAACGTCTCTCTGGGAGGATCGAAGCCGATGAAGAGCACGAC
ATCTTCGCATTTCAGCAGCAGCAGCAGCAGCAGTGTGACCGGCGAGATAA
AGAAGCTGATCAAAACAGAGGATAATAACCTTATGAAGCGCGATGCCAAC
AGCAGCAGCATCGGCAATTTGAGCAAGAAAGAAACACCTGCAACAGAGAA
TGGGGCCGAGAGTGATGCCAAGGGTGCGAAGATTGCTGCGGCCATGAGAA
CAGAGCTTCAGTCGTCATGTCTGGGAGGCAGTGTCGACGGTGACAACTTC
TCTGATGGGTATATTTACAAAGACCCGGCGCCTCTCAAGTGGAGGATTTT
CGAGGCGGTGGCAAAGACGAACGGCCAGCGATGCGGAAGAACGTCTCTCT
GGGAGGATCGAAGCCGATGAAGAGCACGACATCTTCGCATTTCAGCAGCA
GCAGCAGCAGCAGTGTGACCGGCGAGATAAAGAAGCTGATCAAAACAGAG
GATAATAACCTTATGAAGCGCGATGCCAACAGCAGCAGCATCGGCAATTT
GAGCAAGAAAGAAACACCTGCAACAGAGAATGGGGCCGAGAGTGATGCCA
AGGGTGCGAAGATTGCTGCGGCCATGAGAACAGAGCTTCAGTCGTCATGT
CTGGGAGGCAGTGTCGACGGTGACAACTTCTCTGATGGGTATATTTACAA
AGACCCGGCGCCTCTCAAGTGGAGGATTTTCGAGGCGGTGGCAAAGACGA
ACGGCCAGCGGGCCTTCGCGAGGTACTGGTCGACGCTCCGAAATTTCCTC
CGGGGCTGGATCCCGCGCAGCGACCTGGACGAAGAGCTCATCGCGTCCCT
CGGCGCCGAGAACGTCCATCTCCACAATGAGCTCGTCCTGTGCCTCATCA
ACAACGCGCACTGCAGATATATCCCGGCGGAGCTCATGAGCCAGGTGCCA
CCCTCCTGCCGCAGTGCGGTAGTCCATGGCATGAGGACCACGGAGGCGCC
GCCCCCCGCATCGCCCTCCAAGCCGTCGCCAGGCGCCACCGCATCGCTGC
CGTTCCAGGGCAAGCGGAAGGAAGGCTTTTTGGCGACGAAGATGGAGGTG
GTGCGCAAGGATGCTCCGCCAACGGCGCGGGAGGCCAAAGTACGGGGGAA
GGCAGGAGGAGCCTTCGCTGTCGCCGCCGCACCGGAAGGGGGAAATAGTC
TGCGAGAAGGGTTGAGCGGCGGTGGACTCCGACCGCCTGCCCTAGACAGC
AGGGATGGTAGCTGTTACAGTAGGAGCCTCGCGTCTTTGTCATCCGCAAA
AAAACAAGCGGAAACAAAGCCTAAACCGGCGGTGGGAGGGGGCCTTCGCG
AGGTACTGGTCGACGCTCCGAAATTTCCTCCGGGGCTGGATCCCGCGCAG
CGACCTGGACGAAGAGCTCATCGCGTCCCTCGGCGCCGAGAACGTCCATC
TCCACAATGAGCTCGTCCTGTGCCTCATCAACAACGCGCACTGCAGATAT
ATCCCGGCGGAGCTCATGAGCCAGGTGCCACCCTCCTGCCGCAGTGCGGT
AGTCCATGGCATGAGGACCACGGAGGCGCCGCCCCCCGCATCGCCCTCCA
AGCCGTCGCCAGGCGCCACCGCATCGCTGCCGTTCCAGGGCAAGCGGAAG
GAAGGCTTTTTGGCGACGAAGATGGAGGTGGTGCGCAAGGATGCTCCGCC
AACGGCGCGGGAGGCCAAAGTACGGGGGAAGGCAGGAGGAGCCTTCGCTG
TCGCCGCCGCACCGGAAGGGGGAAATAGTCTGCGAGAAGGGTTGAGCGGC
GGTGGACTCCGACCGCCTGCCCTAGACAGCAGGGATGGTAGCTGTTACAG
TAGGAGCCTCGCGTCTTTGTCATCCGCAAAAAAACAAGCGGAAACAAAGC
CTAAACCGGCGGTGGGAGGG
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