mRNA_F-serratus_M_contig6223.17071.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig6223.17071.1
Unique Name	mRNA_F-serratus_M_contig6223.17071.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: D7FQZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ0_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.170e-79
Identity = 139/177 (78.53%), Postives = 153/177 (86.44%), Query Frame = 1

Query:    1 GGGGEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRRLKNNEAVEGR-----RCGGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNARAHSS 516
            GGGGEG GV+ERVVNQLLTEMDGLEAR+NVFVVAATNRPELID AMLRPGRLDRLLYVPLPS +DRVSIL+ALSATVSLGPDV+L  +G N KAEGFSGADLAALLREAGLDVLR+LK+ E + G+     +  GT++ A NF+NAFLRTQPSVSA DR FYVSMKDRL  ARAH S
Sbjct:  769 GGGGEGGGVTERVVNQLLTEMDGLEARKNVFVVAATNRPELIDQAMLRPGRLDRLLYVPLPSASDRVSILKALSATVSLGPDVDLHAVGHNPKAEGFSGADLAALLREAGLDVLRQLKSRELIVGKGAYTEKGAGTVVMATNFDNAFLRTQPSVSATDRAFYVSMKDRLCKARAHPS 945

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A835ZH15_9STRA (Putative ribosome biogenesis ATPase RIX7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH15_9STRA)

HSP 1 Score: 208 bits (529), Expect = 7.780e-60
Identity = 116/175 (66.29%), Postives = 132/175 (75.43%), Query Frame = 1

Query:    4 GGGEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRRLKNNEAVEGRRC----GGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNARAHSS 516
            GG  G GVSERVVNQLLTEMDGLE RR+VFVVAATNRPELIDPAMLRPGRLD+LL+VPLP   DRVSILRAL+ + +L  DV+L  +G + KAEG+SGADL+ALLREAG+DVLRRLK  EA EG       G   I   NFE AF RT  SVS  DR  Y++M+ RL  ARAH +
Sbjct:  593 GGDGGGGVSERVVNQLLTEMDGLEERRHVFVVAATNRPELIDPAMLRPGRLDKLLFVPLPGAEDRVSILRALAKSATLSGDVDLAAVGSHPKAEGYSGADLSALLREAGVDVLRRLKAREAAEGVAVYDTPGAVCIGMANFEAAFERTARSVSDRDRRRYLTMQSRLRRARAHDT 767

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A0P0YV27_9STRA (Host cell division cycle protein n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV27_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.220e-59
Identity = 109/176 (61.93%), Postives = 134/176 (76.14%), Query Frame = 1

Query:   10 GEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRR-------LKNNEAVEGRRCGGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNARAHSS 516
            G GSGVSERVVNQLLTEMDGLE+RR+VFV+AATNRPELIDPAM+RPGRLD+LLYVPLP+P DRVSIL+A+S  V+LGPDV+L+TIGR+ +A+G+SGAD AALLREAGL VL+          + E  EG       ITA +F+ AF    PSVS  D+  Y  M+DR+ +AR+  +
Sbjct:  229 GGGSGVSERVVNQLLTEMDGLESRRSVFVIAATNRPELIDPAMMRPGRLDKLLYVPLPTPNDRVSILKAISGKVNLGPDVDLDTIGRSARADGYSGADCAALLREAGLAVLKEEMSASANAMDTEEEEGEE-RNICITARHFDYAFDHVVPSVSRKDQARYNRMRDRMAHARSRGA 403

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A7S3DW80_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DW80_9STRA)

HSP 1 Score: 182 bits (461), Expect = 7.060e-54
Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = 1

Query:   16 GSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRR-LKNNEAVEGRRCGGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNARAHS 513
            G GVSERVVNQLLTEMDGL++RR+VFV+AATNRPELIDPAM+RPGRLD+LLYVPLP+P DR+SIL ALSA++ +G DV+++ IG + +A G+SGAD AALLREAGL V++  +  ++  E        I   +F+ AF    PSVS  D+  Y  ++DR+ +AR  +
Sbjct:  102 GGGVSERVVNQLLTEMDGLDSRRSVFVIAATNRPELIDPAMMRPGRLDKLLYVPLPTPEDRISILTALSASIKIGEDVDMQKIGASDRAAGYSGADCAALLREAGLAVIKENVVPDDEEEPETAVELFIHNRHFDEAFKSVMPSVSTKDQRRYDRIRDRMASARTRT 268

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A1Z5JI63_FISSO (Ribosome biogenesis ATPase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JI63_FISSO)

HSP 1 Score: 188 bits (478), Expect = 1.250e-52
Identity = 101/171 (59.06%), Postives = 129/171 (75.44%), Query Frame = 1

Query:    7 GGEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRR-LKNNEAVEGRRCGGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNARAHSS 516
            GG G GVSERVVNQLLTEMDGL+ RR+VF++AATNRPELIDPAMLRPGRLD+LLYVPLP+P DRVSIL+ALS+ ++L  DV+ E IG + +A G+SGAD AALLREAGL VL+     N++++  R     I+A +F+ AF    PSV+  +   Y  ++DR+ NAR+  S
Sbjct:  630 GGGGGGVSERVVNQLLTEMDGLDGRRSVFIIAATNRPELIDPAMLRPGRLDKLLYVPLPTPEDRVSILKALSSNIALADDVDFEVIGMSTRANGYSGADCAALLREAGLAVLKEDTALNDSLQENR--SLQISARHFDIAFSSVMPSVTRREEARYQRIRDRMSNARSRGS 798

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A7S1GP83_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP83_CYCTE)

HSP 1 Score: 175 bits (444), Expect = 1.880e-52
Identity = 99/161 (61.49%), Postives = 116/161 (72.05%), Query Frame = 1

Query:   22 GVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRRLKNNEAVEGRRCGGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNAR 504
            GVSERVVNQLLTEMDGLE+RR V V+AATNRPELIDPAMLRPGRLD+LLYVPLPS  DRVSILRALS+ V+L   V+LE IG++ +A G+SGAD AALLREAGL VL+          R      I   + E AF +  PSVS  D+  Y  ++DR+  AR
Sbjct:   26 GVSERVVNQLLTEMDGLESRRTVLVIAATNRPELIDPAMLRPGRLDKLLYVPLPSSGDRVSILRALSSNVTLAESVDLEEIGKSPQANGYSGADCAALLREAGLAVLKESMVRPDTPLR------IDKSHLEYAFQQVLPSVSKRDQARYDRIRDRMARAR 180

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A7S2E712_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E712_TRICV)

HSP 1 Score: 171 bits (433), Expect = 5.120e-52
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 1

Query:   16 GSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLR 345
            G GVSERVVNQLLTEMDGL++RR+VFVVAATNRPELIDPAM+RPGRLD+LLYVPLP+ +DRVSILRAL+  V LG DV+L+ IGR+ +AEG+SGAD AALLREAGL VLR
Sbjct:    9 GGGVSERVVNQLLTEMDGLDSRRSVFVVAATNRPELIDPAMMRPGRLDKLLYVPLPTASDRVSILRALAVKVRLGDDVDLDAIGRSSRAEGYSGADCAALLREAGLAVLR 118

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: B8CDA1_THAPS (Nuclear vcp-like-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDA1_THAPS)

HSP 1 Score: 181 bits (459), Expect = 6.800e-51
Identity = 105/171 (61.40%), Postives = 125/171 (73.10%), Query Frame = 1

Query:    7 GGEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLR-----RLKN---NEAVEGRRCGGTI-ITAGNFENAFLRTQPSVSAVDRDFYVSMKDRL 492
            GG G GVSERVVNQLLTEMDGL++RR+VFV+AATNRPELIDPAMLRPGRLD+LLYVPLPSP DR+SILRALS  + L PDV+L  I  +  + GFSGAD AALLREAGL VLR     R K+   NE V+ +     + ITA +F  AF    PSVS  D+  Y  +++R+
Sbjct:  435 GGGGGGVSERVVNQLLTEMDGLDSRRSVFVIAATNRPELIDPAMLRPGRLDKLLYVPLPSPTDRLSILRALSTKIKLAPDVDLHAIANDPHSNGFSGADCAALLREAGLAVLRDGVLNRTKDKDGNEVVDKKTEIKLLQITAYHFRYAFDHVLPSVSKKDQARYDRLRERM 605

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A3R6YJE6_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YJE6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.450e-50
Identity = 90/163 (55.21%), Postives = 115/163 (70.55%), Query Frame = 1

Query:   16 GSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLRRLKNNEAVEGRRCGGTIITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNAR 504
            G+GVSERVVNQLLTEMDGL+AR+NV V+AATNRP++IDPAMLRPGRLD+LLYVPLP+ +DR  IL+ L+A  SL P ++LE +  + + + FSGADL+AL+REAG+ VLR    +           II A +FE AF    PSVS  D+  +  MK  L  +R
Sbjct:    5 GNGVSERVVNQLLTEMDGLDARKNVVVIAATNRPDIIDPAMLRPGRLDKLLYVPLPTASDRFHILKTLAAKCSLDPTLDLEKVAYDSRCDSFSGADLSALVREAGVSVLRESAEHTTE-------LIILAKHFEQAFQTVFPSVSKADQKIFEKMKQNLRKSR 160

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BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Match: A0A7S1KKL8_CYCME (Hypothetical protein n=1 Tax=Cyclotella meneghiniana TaxID=29205 RepID=A0A7S1KKL8_CYCME)

HSP 1 Score: 181 bits (460), Expect = 7.160e-50
Identity = 105/183 (57.38%), Postives = 128/183 (69.95%), Query Frame = 1

Query:    7 GGEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPGRLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGADLAALLREAGLDVLR-------RLKNNEAVEGRRCGGTI------ITAGNFENAFLRTQPSVSAVDRDFYVSMKDRLGNARAHSS 516
            GG G GVSERVVNQLLTEMDGL++RR+VFV+AATNRPELIDPAMLRPGRLD+LLYV LP+P DR+SIL+ALS  V+L  DV+LE+I  +  A+GFSGAD AALLREAGL VLR        + NN+    +   G        ITA +F+ AF    PSVS  D+  Y  +++R+  AR   S
Sbjct:  750 GGGGGGVSERVVNQLLTEMDGLDSRRSVFVIAATNRPELIDPAMLRPGRLDKLLYVSLPTPKDRLSILQALSKKVNLAADVDLESIANDPHADGFSGADCAALLREAGLAVLRDGVLDRASIGNNDVSGSKDTEGEHKQLQLQITAHHFKYAFDHVLPSVSKKDQARYDRLRERMARARTRGS 932

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig6223.17071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQZ0_ECTSI	1.170e-79	78.53	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835ZH15_9STRA	7.780e-60	66.29	Putative ribosome biogenesis ATPase RIX7 n=1 Tax=T...	[more]
A0A0P0YV27_9STRA	1.220e-59	61.93	Host cell division cycle protein n=1 Tax=Nitzschia...	[more]
A0A7S3DW80_9STRA	7.060e-54	56.89	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A1Z5JI63_FISSO	1.250e-52	59.06	Ribosome biogenesis ATPase n=2 Tax=Fistulifera sol...	[more]
A0A7S1GP83_CYCTE	1.880e-52	61.49	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
A0A7S2E712_TRICV	5.120e-52	79.09	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
B8CDA1_THAPS	6.800e-51	61.40	Nuclear vcp-like-like protein (Fragment) n=1 Tax=T...	[more]
A0A3R6YJE6_9STRA	1.450e-50	55.21	Uncharacterized protein n=4 Tax=Aphanomyces astaci...	[more]
A0A7S1KKL8_CYCME	7.160e-50	57.38	Hypothetical protein n=1 Tax=Cyclotella meneghinia...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig6223	contig	F-serratus_M_contig6223:15561..22005 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	264.2
Seed ortholog evalue	4.2e-68
Seed eggNOG ortholog	2880.D7FQZ0
KEGG ko	ko:K14571
KEGG Pathway	ko03008,map03008
Hectar predicted targeting category	other localisation
GOs	GO:0000166,GO:0000502,GO:0000731,GO:0002020,GO:0002082,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005829,GO:0006139,GO:0006140,GO:0006163,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006914,GO:0006919,GO:0006950,GO:0006974,GO:0007034,GO:0007041,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009109,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009166,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010918,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016504,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0018193,GO:0018196,GO:0018279,GO:0019058,GO:0019079,GO:0019219,GO:0019220,GO:0019222,GO:0019362,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019899,GO:0019902,GO:0019903,GO:0019904,GO:0019941,GO:0019985,GO:0022411,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030163,GO:0030177,GO:0030234,GO:0030433,GO:0030554,GO:0030808,GO:0030810,GO:0030970,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031593,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032509,GO:0032510,GO:0032527,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032991,GO:0033036,GO:0033554,GO:0034098,GO:0034214,GO:0034404,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034976,GO:0035639,GO:0035800,GO:0035861,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036435,GO:0036503,GO:0036513,GO:0042175,GO:0042176,GO:0042221,GO:0042287,GO:0042288,GO:0042325,GO:0042327,GO:0042391,GO:0042726,GO:0042728,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043412,GO:0043413,GO:0043457,GO:0043467,GO:0043531,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044389,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045732,GO:0045838,GO:0045862,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051788,GO:0051881,GO:0052547,GO:0052548,GO:0055086,GO:0060255,GO:0060828,GO:0061134,GO:0061136,GO:0061857,GO:0061919,GO:0062012,GO:0062013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070841,GO:0070842,GO:0070887,GO:0071218,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071712,GO:0071840,GO:0071897,GO:0071985,GO:0072387,GO:0072389,GO:0072521,GO:0072524,GO:0080090,GO:0090085,GO:0090263,GO:0090304,GO:0090734,GO:0097159,GO:0097352,GO:0097367,GO:0098772,GO:0098796,GO:0098827,GO:0140030,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902494,GO:1903003,GO:1903004,GO:1903006,GO:1903007,GO:1903050,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903513,GO:1903578,GO:1903580,GO:1903715,GO:1903862,GO:1904288,GO:1904949,GO:1905368,GO:1905369,GO:1990381,GO:1990730,GO:2000058,GO:2000060,GO:2000116,GO:2000152,GO:2000158,GO:2001056,GO:2001169,GO:2001171
EggNOG free text desc.	preribosome binding
EggNOG OGs	COG0464@1,KOG0733@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03009
Exons	5
Model size	518
Cds size	516
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig6223.17071.1	prot_F-serratus_M_contig6223.17071.1	Fucus serratus male	polypeptide	F-serratus_M_contig6223 15561..22005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931930.7922573-CDS-F-serratus_M_contig6223:15560..15599	1622931930.7922573-CDS-F-serratus_M_contig6223:15560..15599	Fucus serratus male	CDS	F-serratus_M_contig6223 15561..15599 +
1690964062.878234-CDS-F-serratus_M_contig6223:15560..15599	1690964062.878234-CDS-F-serratus_M_contig6223:15560..15599	Fucus serratus male	CDS	F-serratus_M_contig6223 15561..15599 +
1622931930.8183036-CDS-F-serratus_M_contig6223:17252..17398	1622931930.8183036-CDS-F-serratus_M_contig6223:17252..17398	Fucus serratus male	CDS	F-serratus_M_contig6223 17253..17398 +
1690964062.892179-CDS-F-serratus_M_contig6223:17252..17398	1690964062.892179-CDS-F-serratus_M_contig6223:17252..17398	Fucus serratus male	CDS	F-serratus_M_contig6223 17253..17398 +
1622931930.8383362-CDS-F-serratus_M_contig6223:20206..20300	1622931930.8383362-CDS-F-serratus_M_contig6223:20206..20300	Fucus serratus male	CDS	F-serratus_M_contig6223 20207..20300 +
1690964062.9093513-CDS-F-serratus_M_contig6223:20206..20300	1690964062.9093513-CDS-F-serratus_M_contig6223:20206..20300	Fucus serratus male	CDS	F-serratus_M_contig6223 20207..20300 +
1622931930.8596973-CDS-F-serratus_M_contig6223:20908..21011	1622931930.8596973-CDS-F-serratus_M_contig6223:20908..21011	Fucus serratus male	CDS	F-serratus_M_contig6223 20909..21011 +
1690964062.9258816-CDS-F-serratus_M_contig6223:20908..21011	1690964062.9258816-CDS-F-serratus_M_contig6223:20908..21011	Fucus serratus male	CDS	F-serratus_M_contig6223 20909..21011 +
1622931930.882082-CDS-F-serratus_M_contig6223:21871..22005	1622931930.882082-CDS-F-serratus_M_contig6223:21871..22005	Fucus serratus male	CDS	F-serratus_M_contig6223 21872..22005 +
1690964062.9363666-CDS-F-serratus_M_contig6223:21871..22005	1690964062.9363666-CDS-F-serratus_M_contig6223:21871..22005	Fucus serratus male	CDS	F-serratus_M_contig6223 21872..22005 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig6223:15561..22005+
coding sequence from alignment at F-serratus_M_contig6223:15561..22005+

protein sequence of mRNA_F-serratus_M_contig6223.17071.1

>prot_F-serratus_M_contig6223.17071.1 ID=prot_F-serratus_M_contig6223.17071.1|Name=mRNA_F-serratus_M_contig6223.17071.1|organism=Fucus serratus male|type=polypeptide|length=172bp
GGGGEGSGVSERVVNQLLTEMDGLEARRNVFVVAATNRPELIDPAMLRPG
RLDRLLYVPLPSPADRVSILRALSATVSLGPDVNLETIGRNCKAEGFSGA
DLAALLREAGLDVLRRLKNNEAVEGRRCGGTIITAGNFENAFLRTQPSVS
AVDRDFYVSMKDRLGNARAHSS

mRNA from alignment at F-serratus_M_contig6223:15561..22005+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig6223.17071.1 ID=mRNA_F-serratus_M_contig6223.17071.1|Name=mRNA_F-serratus_M_contig6223.17071.1|organism=Fucus serratus male|type=mRNA|length=6445bp|location=Sequence derived from alignment at F-serratus_M_contig6223:15561..22005+ (Fucus serratus male)
GGTGGTGGCGGGGAGGGAAGCGGGGTCAGCGAACGCGTGGTGAGCTTAAC
AAACGACGATTGAATGATATAAAGTATGCAATTCGATGAAGTTGGGGAGA
TTTCGGCGGCAAAATATATTACCGACATCATGAAACCCTTAAGCAGCAAG
CTGGTGAGCTGATGTGATGTGATGTGTATGTGGTGTGAAGTGCTTGCTTG
AGGGTAGGTCTTCTCAAGGGAAAAATAGACGCTTATGCCAAGGGTTTCAC
AAGCTATTGAGGCGTTTCATCTCCGGCTTACTTCATTTGTTCTGTTTTTT
GTATCTCACCTTCTCCGCCGATGGACAGCCAAGGTGCTAGGCTACCCATC
TCACCTCCTACATGTACAACGTTACTATCCTGTCTGTAGTCACTTGGGGG
ATCTTCCCATCTCTCCCCGATTCTCCTTTACATTATTTTTATGGTACTAT
GATACATGTTCAGCCCTCTTATACCTCGTCAACTAATCAATTAAACATGT
TCAAAGATGGTCAATGATGTTCAATGATGGTTGAAAATGTTTACCTACTC
ATGTTCTGACGCTTTACTTCCCGCGACGGAAGCCAGGGTTGAAAAAAATC
CAGTCAACATTCGAACTCAACAAATTCCCCACTCTAGTAAATTGCGAGGT
TTTCCACTACTCCACACTCAGGCGTGAGCTTGATTGATGGTATTATAGTG
TGTGGGGAATTCTTCTCGCCAAGAGACTGATCTGGTACTAACACTAAGAA
ACGCCAAACGGTTTAGGAACATCTGCCTTAGGCGACGGGAGACGTCAGTC
AGTCTATCTCCATTCCCCGTGCTAGATGGGCGGAATTTGGCGCACCCTCA
GCAACAGAAAACACAAGACGGCGGCAGCGGATTTTCTACGACCGCGCTAG
GGTAGCGTTAAAAAAATACTCGGTACAAAACAAATCAAACACTAGTATTA
ATATAATAATTTCTTGTTGTGGGGGTGTTACCGCTGCTTGGGATGTCTCG
AAAAGTGTGTGTATGTATGTCATATCGTTTTGTTAATAGGAATATTAGTA
TACCTTGTGGACATTGAATCACGGGACATTGGGGTAAAATGGTCTGGCGT
CGTTCGTGCTTCGGTGGCTGAGTCCATCGAACTATTGATAAATGTTAAGA
GGTGGTGCGCGGCCTGGCTACGAGAGAGGGTGCTGTGTTATGCAAAGACA
AAGGTGCCACTCTTCTGCCACGCTCGTTTCTCTTTGTTCCCCCACGGTTA
GTATCAGAGCTCCAAAGCGCGAGGTCTGACCGATCGGCTGTCGATACCGC
TGATCGCTGTTTGACAATGAGTGTTAATCCGTATTACTAGTTTCATAGTA
TTAATAGTATCAAAAGCGAAAATCGTGCTACCGTAGTATTAACAGTACTA
GATTGCCGATCGGTCAACCAAATTAAAGGGCATTACAGTCATGCACTCTA
GAGGTTTTTGTTCGTTGTTATTTTTTGTTGTTACATCACGGCAGCATGCT
TTTTCGACTCATTTTCTTCCCAACTCACCCAAATCATCAAATGGAGAGAT
CATACAAAACAAATCATCAATAAGAACTTGAGTCACATACAGTATCGCTG
TTGGCAAAACGCCGTCGAATATTCTGGCCCACGCCACCGCCTCCTCGTGC
CCTTTTCTCTACCCTTACACACGCACTCCCACGCCTTCGCAGGTTAACCA
GCTCCTGACGGAAATGGACGGCTTGGAGGCGAGGAGAAACGTGTTCGTCG
TGGCTGCGACCAACCGTCCGGAGCTCATCGACCCGGCCATGCTGCGTCCC
GGTCGCCTCGATCGCTTACTCTACGTGCCCCTCCCCAGGTGCGGGCGATG
GACACCCGGTTTCGGGATGTCCCCGAGGAATTCAGGGAAGAGGGTGTGGT
GGAGTTACATTACATTACATTACATTACATTAGATTTGGTTTTTAGTATT
TAACGCTCGTTTTTTTTTAAGGGCAACAGAGTTCGAAACGATGTGTTTTT
CGTGACTCATTAAAGCAACCATACTACTATTTCTACAGTATATTTTTTAT
TTGGAGCAGACCCCCGTTCCTCCCCTTCTACAGTCCATGTTTTGAATTTT
TCTTCTAACATATCTAGGGGATAGGGGAGACCAATCCCCGGGTTTTTTAT
TTTCGGCAGAGAAGGTTTGACACAGCCTCAAGTGCACTCAAACTGTATAT
TAATTGTACTGTAAAATAGGAACATGGCAAAGTCTCAGACACGAAGAAGG
GGTTGGCTTAACTATAATAGGTTTTCGCCCCAACAAGGGTGCAAAGCGTT
TTGTGTGTCTTCGTGTGTGTAGAGTAAAGGAGAGGCCGGTTGGATGTCGT
TTTGACATCTTGATTCGCGACGCATGTTTTGGGGAACGCGGGGGGGAAAA
CCCAGCCGAGGCGTTCGTTGTTCGCTGTCGTAGGAACGCAACCGTTTTTT
TTTTGTGTGTGTACAGTAGTGCTGCGTGCTTGTTGTGTGCACTGCAGTAG
AATATTATCCAAATTTTCGGTGTCAATCGCCCCTAAAATCATGTCTCAGT
AGGTAACGATAGGGCGGATGGAGTGTTCGAGGAATTATGATCTCCTCGCA
AGTGCTGAACGCCCCCCCCCCCGTTGTTTACGGTTTAACATGTCATGTCA
TGTAGTGCCCGTCAATTTATAGTCAATTTCTAGCTTGTCCTTAACGTGAT
ACACGTATGTTTTTATTAAAATTTTTTACTGTATTATTATGTATGTCACA
CGTACATGCCGGTGGTGGTGAAAGTTGAGTACAGTATATGATCTTGACTT
CCTTTTTCTATTTTTTTTTTAGTTTTCGAATCGCCCACTATGACCCTACG
CCCATGCAACCCTCCCATTTTTACTATTAACAAATACCAGTACTAAACAC
GATTCTTTGTTGGTTATCATGATCTCGGTAGCCCCGCGGATCGCCCCCCA
CCCCCCCCCTGTAGTGCATTGGGGGGCCCGCACCTCTTCGGGGGTCCCAC
CCTACACCGCGGGGTCCCATCCCTACACCGCGGGGTTTTCCATTTTTATT
TTTTTGCTGTTACCTTGGGAAGGCGTTCAGAATCCGGGGATCGAGGGGAA
GATCCGTCGTACGGCGACTGGTCCCCGGATTTCCGCCCTGTAAACGCCTT
CCCAAGGTCACGGAGTAACATCAAGATCTAGGTGCGTTCTGTATTTTATT
CAAACACCAAAACAAGTAAAAATGAGAAACACTAATGAAGTAAAATATAC
AGTGCTAGCTAGGAGTAAGGTACCGGCAAAAATAATTAAAAAATATATAT
AAATATAAAAACAAGGGTGAGGGGATCTCGTGGGGGGGGGGGCAAAAGTA
GAAATTAAAAACACAAAAGTAAAGTATACAGTGCTAGCTAGGAGTAACGT
AACAGCAAAAATTATTAAAAAATATATATTATAAAAAAACAAGGGGGGGG
CTCCGCGGGACCCAACCCCCTACACGGTGGGGCCCACCCCCCTACACCGC
GGAGCCCACCCCCCCTTAGACGGCGGGGCCCACCACCCTCAACACGGCGG
GACCCACCCCCCCTATACCGCGGGGCCCACCCCCTACACCGCGGGTCCCA
CCCCCCTCAACACGGCGGGATCCACCCCCCCTAGTGCTATCTAGGTGGGT
CCCGCCGTGTTGAAGAGGGTGGGTCCCGCCGTATAGGAGGGGGATGGGTC
GCGCGGGATACCCCCTTGTTTTTTTATAATATATATATTTTTAATTATAT
TTGCCGTTACCTTACTCCTAACTAGCACTGTATATTTTACTTTTGTGTTT
TCCAGGGGGGGGATAGTGCAGGGGGGGGGGTCTTGCGATGAGGGGGGGGG
GGCCCCGCGGTGTAGGTTGGGACCCCCGAAGAGGTGCGGGCCCCCCAATG
CACTACCCCCCCGTTGCTTAGGGTTCAACATGTAATGTCATGTAATGCCG
GTCAATTTCTAGCTTGTCCTTAACGTGATACACGTTTTTCATTTTAATTT
ATTTTCAATTATTATGTTACATTCATAACCAATAGTGGGTGTGGGAAAGA
AAGGCGTATATTAATTGGTCCATAGTGACCTGCGAAGGCAGCACTCGTTC
GAAACTACCTTGAGGTATGCTGGCCCTGTGCCGGCGGATTCTCGGCAGTG
AACGCCATCGGTACGCAATTGCGTGACCCGATTTACTCGGGACTGACCCG
ATGGCGTATGGCGGTTTAATATTAATATATGGACGCCGCCGCGGAACTCT
GGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAG
CAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAGACCAAATTC
CCAGGCGCGAACGCGGACAGGGGAATATTATTTTCTCTGTTTAGCTGACC
ACGAGCAGGATTGGCAACCTTAACAGGTTGATCCACACTCTTGCTATATG
TGTGACCATACACATGTACATGCCGGTGGTGCTGAAAGTTGAGTATATTA
TCTTGTCTTCCTTGTTCTATTTTTTTTTAGTTTTCGAATCGTCCACAATG
ATCATCATGTACCCATGCAACCCTCCCGTTTTTGCTATTAACAAATACTA
GTACTAACTACGATTATTTTTTGGTCACCATGGTCTCTCTCGGCAGCCCC
GCGGATCGCGTCTCCATTCTGAGGGCGCTATCGGCCACCGTTTCCCTGGG
ACCGGACGTGAACTTGGAAACAATCGGCCGGAACTGTAAGGTCCGTCACC
CTTTTTTGAAGAGGAAATACCTAATGCTATGCTGGTGCTACAAAGAGCAG
TCACGAACCGATCGCGAACTTTGTTGTACTTACGTACTGCGGGGGAACTA
CCCAATGTAATAGAGAGCCATAAGTACCTTTTATTTATTGATATTTTTCA
CCGTGCGTGAGAAACTAGTTTTTTTCATTTTGGCCCTGTAAACGAAAAAA
GAAGCACTTCTAAAAGTCGATATAGCCGGCGTCTTCTAATCTATTTCATG
CATTTTTTCAGCCCCCCCCCCACCTCCCCTCCTCCCCCAGCCTCCTTATC
ATATACCAGTTGCACATTATTATTAGTACATTGTACCGTTCGCGCCGTGC
TTTCGTAATTTACGAAAAAGTCTGCAATTCGCGGTTTCATTTTACTTTTA
CTTTTTCCTCCCTCCAGGTCATACGTGTTGAATTAATGTATTCGTTTACT
TCGTGTGAGTACATAGTCTTGATTTGCGTGTTGAATTAATGTAACTGTGT
CCCTACGTCTGGATATATGAATATTTTGTCGTCTGCCTTATAATGTGTAA
TTTGATGTTCATTATTCATTACTTGATTTGATTTTTTTTTGTGTCAAGGC
GGAGGGTTTCAGCGGAGCCGATCTGGCGGCGCTACTGCGGGAGGCGGGGC
TGGATGTGCTGCGACGGCTCAAGAACAACGAGGCCGTGGAAGGTAGGAGA
TGTACCTTTGGGGGGGGGGTATAAAGTGCATGTCTATGTGGGTATACGTA
CATCGGGTATGTGCCTGTTTGTGTTATTGGTCACAACTTTCAGTAGACTG
GGCATCAACCGGTTATGGTTGCCAATCTATACAAACCTTATGTGTTGTGT
ATTAGACTGGATATATGTACGCGCGGGACGGGACTGCCGAACCCGTGTCG
CGAGACCAAATTCTCAGGCGCGAACGCGGAGAGGGAAATACGAATTTCCC
CTGTTCAGCTGACCACGTGCAGGATTGGCAACCTCTTAACCGGTTGATCC
ATACTCTTGCTATATGTGTGACCATACATACATACATGTTTGTGCTGGAC
GTCTAGTTGTATTTTTTTGTCTATACGTGAATGTGTCTCTGCGGAAGTGC
GTGCACCTGCAGTCGTCCGTGTAGACGTGCGCTTGTGTGCTTGTATGGTT
GAATATTTGTGCCTGTTCTACGAGTATGCGTTTGGATTGACTCATTAAGA
ATTGCATGTAATGTAGGTTGTGGTGATGGCTGTCATGATCTCCCCCCTAT
CCGATCAACAACCCATAACTCTATATCCACATAGTATCCCCGATGGCAAG
CACAATCAACGAAGGCTGCGGCCGTCCCGACTGGAAGCCCCCGACCACGA
CTTTCCCGCGTACGCCGCCACACGGACTTCGTCGCTTCTCTCCGCTTGCG
TGGAACCAGTTTTCCTCCCGCGCGTTCAAACGCTTCATTATCTCTACAAA
AATTCATAAGACAGACCCCTATACATCCCACCCTCCTCCCGACCAGATGC
CTCAGTTCGAGTAACACTACGACCCCCACCCCCTTTCGCTTCCTCGTTCC
CTCCTTGCCAGGCGGAGGCACAATAATTACGGCCGGGAACTTCGAGAACG
CCTTCCTCCGTACGCAGCCCTCGGTGTCAGCGGTGGATCGTGATTTCTAC
GTGAGCATGAAGGATCGCCTCGGCAATGCCCGGGCGCATTCGTCC

Coding sequence (CDS) from alignment at F-serratus_M_contig6223:15561..22005+

>mRNA_F-serratus_M_contig6223.17071.1 ID=mRNA_F-serratus_M_contig6223.17071.1|Name=mRNA_F-serratus_M_contig6223.17071.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig6223:15561..22005+ (Fucus serratus male)
GGTGGTGGCGGGGAGGGAAGCGGGGTCAGCGAACGCGTGGGTGGTGGCGG
GGAGGGAAGCGGGGTCAGCGAACGCGTGGTTAACCAGCTCCTGACGGAAA
TGGACGGCTTGGAGGCGAGGAGAAACGTGTTCGTCGTGGCTGCGACCAAC
CGTCCGGAGCTCATCGACCCGGCCATGCTGCGTCCCGGTCGCCTCGATCG
CTTACTCTACGTGCCCCTCCCCAGGTTAACCAGCTCCTGACGGAAATGGA
CGGCTTGGAGGCGAGGAGAAACGTGTTCGTCGTGGCTGCGACCAACCGTC
CGGAGCTCATCGACCCGGCCATGCTGCGTCCCGGTCGCCTCGATCGCTTA
CTCTACGTGCCCCTCCCCAGCCCCGCGGATCGCGTCTCCATTCTGAGGGC
GCTATCGGCCACCGTTTCCCTGGGACCGGACGTGAACTTGGAAACAATCG
GCCGGAACTGTAAGCCCCGCGGATCGCGTCTCCATTCTGAGGGCGCTATC
GGCCACCGTTTCCCTGGGACCGGACGTGAACTTGGAAACAATCGGCCGGA
ACTGTAAGGCGGAGGGTTTCAGCGGAGCCGATCTGGCGGCGCTACTGCGG
GAGGCGGGGCTGGATGTGCTGCGACGGCTCAAGAACAACGAGGCCGTGGA
AGGTAGGAGATGCGGAGGGTTTCAGCGGAGCCGATCTGGCGGCGCTACTG
CGGGAGGCGGGGCTGGATGTGCTGCGACGGCTCAAGAACAACGAGGCCGT
GGAAGGTAGGAGATGCGGAGGCACAATAATTACGGCCGGGAACTTCGAGA
ACGCCTTCCTCCGTACGCAGCCCTCGGTGTCAGCGGTGGATCGTGATTTC
TACGTGAGCATGAAGGATCGCCTCGGCAATGCCCGGGCGCATTCGTCCGC
GGAGGCACAATAATTACGGCCGGGAACTTCGAGAACGCCTTCCTCCGTAC
GCAGCCCTCGGTGTCAGCGGTGGATCGTGATTTCTACGTGAGCATGAAGG
ATCGCCTCGGCAATGCCCGGGCGCATTCGTCC