mRNA_F-serratus_M_contig1517.3555.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1517.3555.1 vs. uniprot
Match: D8LK15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK15_ECTSI) HSP 1 Score: 301 bits (771), Expect = 5.550e-93 Identity = 212/464 (45.69%), Postives = 260/464 (56.03%), Query Frame = 3
Query: 81 MEPKRKW---YQANKTRDGHRSTDGAPEADRQDERQQSTKKPR-ISAISIGQVKGHQAVVGTCDVRHDRAATAELIDLLNAFADVLIVPPKGRGARGVSPNKASSRARDDASVVNSGLA----ASAENQTSATQSSGEVEQPSVLLSVEEMVREEAKALRTGQDKIHRFKSVNTSVKGVIMVCVMDPTLDVLLLVDALFAEIRETGKRRSRFLERVTPIQVTSFSEIESFKAAVQPIVFSALPPVAEGVPSLASGLAAEAVDCSREVPEIDGGDKGSGTVAVLKGPETAKEPSNSDNGVGGQALQTTTGAAGKGEGRREVNGHSDKKGVHADLGEPPDHGAPDEGARCMQQATCPGRAEEVKTGGRGVEAEGGASAIITRDERWKFRVDVRKRNSALKRMALIEAVAESVGKGHSASMASPNVTIVVEAIKSVVGASVLFNYALNREYSISRLQDAVCGNILDS 1448
M PK+KW YQA + R+G + +G + KKPR +AI++G VKGHQAVVGTCDVRHDR ATAEL+D+LN+ AD + G A AS A ++ G A A + G E +SVEEMV++EA ALR+G DK+HRFKSVNTSVKGV+MVCV+DP +D+L LVD L+ EIR T RRSRFLERVTP+QVT++SE+++ K AV PIV ALPPVAE VP L + + A G K +G AV T +S + V +A +T G+G NG D + V G + T D+RWKFR D+R+RNS LKR+ LI A SVG GHS +M SP VTIVVEA+KSVVG SVLFNYA N EYSISRLQDAVCG ILDS
Sbjct: 1 MGPKKKWTGHYQAKRPREGEQDGNGGSG-------DEGPKKPRRTAAINLGNVKGHQAVVGTCDVRHDRQATAELVDMLNSVADDMYPETDGDDAAAEDAATASPVAPTPSAEGKPGNGDSDGARAXXXXXXXPAGGAAE-----MSVEEMVKQEADALRSGSDKVHRFKSVNTSVKGVVMVCVVDPKVDILRLVDTLYDEIRTTKMRRSRFLERVTPLQVTAYSELDAIKEAVGPIVSKALPPVAEEVPPLPTAVRAS-------------GAKATGPAAVKTEKGTPAPKDSSGDKV--KAAETEE-KEGEGAAASAPNGTGDXXXXXXXX--------------XXXXXXXXXEGDVVSDG----------NEKKTCDKRWKFRADIRRRNSGLKRLDLINAAVGSVGVGHSVNMTSPEVTIVVEAVKSVVGVSVLFNYARNHEYSISRLQDAVCGAILDS 412
BLAST of mRNA_F-serratus_M_contig1517.3555.1 vs. uniprot
Match: A0A835Z5R2_9STRA (THUMP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R2_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.440e-7 Identity = 29/74 (39.19%), Postives = 47/74 (63.51%), Query Frame = 3
Query: 582 VKGVIMVCVMDPTLDVLLLVDALFAEIRETGKRRSRFLERVTPIQVTSFSEIESFKAAVQPIVFSALPPVAEGV 803
++GV++VCV+D TLD++ + LF+++R+T RRSRFL R P+ T + + ES +P+V A + E V
Sbjct: 1 LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPV 74
BLAST of mRNA_F-serratus_M_contig1517.3555.1 vs. uniprot
Match: A0A5D6XRX3_9STRA (THUMP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRX3_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.480e-7 Identity = 49/187 (26.20%), Postives = 88/187 (47.06%), Query Frame = 3
Query: 228 KGHQAVVGTCDVRHDRAATAELIDLLNAFADVLIVPPKGRGARGVSPNKASSRARDDASVVNSGLAASAENQTSATQSSGEVEQPSVLLSVEEMVREEAKALRTG--QDKIHRFKSVNTSVKGVIMVCVMDPTLDVLLLVDALFAEIRETGKRRSRFLERVTPIQVTSFSEIESFKAAVQPIVFSAL 782
KG V+ TCD +R + + +D+LN AD P +R DA +SG A+A S +V++ +++E ALR + K RF +++T VKGVI++ ++DP + LV +FAE+ + + SRF+ R+ P++ + + + +P++ + L
Sbjct: 32 KGSGGVLVTCDKTKERQSVRDTLDVLNDAADKFF------------PATEMARLAGDAEETDSGATAAAS---------------SAADTVQKKLQDEINALRADAKKRKTGRFTALDTGVKGVILIQILDPEISARALVLRIFAEVEASKEFASRFISRLIPLEKIGHAARDDIRELARPMIAAQL 191
BLAST of mRNA_F-serratus_M_contig1517.3555.1 vs. uniprot
Match: A0A1V9Z6J2_9STRA (THUMP domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6J2_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.770e-6 Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 3
Query: 504 EMVREEAKALRTGQDKIHRFKSVNTSVKGVIMVCVMDPTLDVLLLVDALFAEIRETGKRRSRFLERVTPIQVTSFSEIESFKAAVQPIV 770
E + EE K L+ +DK RF +++T VKG+IM+ ++D + V+ LVD +F E+ +T + SRF++R+ P++ F +E AV P +
Sbjct: 83 EKLAEEIKGLK--KDK-GRFVALDTGVKGIIMIQIVDRKIPVIALVDRIFEEVVDTKQFSSRFIQRLIPLENLCFPSVEDITTAVTPFI 168
BLAST of mRNA_F-serratus_M_contig1517.3555.1 vs. uniprot
Match: UPI00189BAD3F (THUMP domain-containing protein 1-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189BAD3F) HSP 1 Score: 56.2 bits (134), Expect = 8.750e-5 Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 3
Query: 495 SVEEMVREEAKALRTGQDKIHRFKSVNTSVKGVIMVC--VMDPTLDVLLLVDALFAEIRETGKRRSRFLERVTPIQVTSFSEIESFKAAVQPIVFS 776
S+E+ + EE L+ +DK+ RF+ V T V G V V DP LV A+F +++ ++RSRF++R+ P+Q T + +++ K V+ ++ S
Sbjct: 73 SIEDDIAEELNELKESKDKVRRFQKVKTDVAGNFFVTTTVDDPGR----LVTAIFEDLKAKHEQRSRFIQRLLPVQTTCKANLDTMKKTVETVLAS 164 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1517.3555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1517.3555.1 >prot_F-serratus_M_contig1517.3555.1 ID=prot_F-serratus_M_contig1517.3555.1|Name=mRNA_F-serratus_M_contig1517.3555.1|organism=Fucus serratus male|type=polypeptide|length=457bp MEPKRKWYQANKTRDGHRSTDGAPEADRQDERQQSTKKPRISAISIGQVKback to top mRNA from alignment at F-serratus_M_contig1517:131945..134031- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1517.3555.1 ID=mRNA_F-serratus_M_contig1517.3555.1|Name=mRNA_F-serratus_M_contig1517.3555.1|organism=Fucus serratus male|type=mRNA|length=2087bp|location=Sequence derived from alignment at F-serratus_M_contig1517:131945..134031- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1517:131945..134031- >mRNA_F-serratus_M_contig1517.3555.1 ID=mRNA_F-serratus_M_contig1517.3555.1|Name=mRNA_F-serratus_M_contig1517.3555.1|organism=Fucus serratus male|type=CDS|length=2742bp|location=Sequence derived from alignment at F-serratus_M_contig1517:131945..134031- (Fucus serratus male)back to top |