mRNA_F-serratus_M_contig1517.3553.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1517.3553.1
Unique NamemRNA_F-serratus_M_contig1517.3553.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1517.3553.1 vs. uniprot
Match: D8LK11_ECTSI (GBBH-like_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK11_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.120e-20
Identity = 67/135 (49.63%), Postives = 84/135 (62.22%), Query Frame = 3 
Query:  405 RRHVSPFAGGSWGKQEPGAADGEVRE-IARR-----EEEVLEALAAVHEPCTNKEVVQLGLVQDLHI-------------GDEGA-----VTFTVRVPTLALPGRNELAAACEKAVLALPWVTSAAALTKARRPR 737
            RRH+S + G  WG+   G  +    E +ARR     EEEVL  L+ V EPCT K+VV+LG VQD+ I             G++ A     ++FT+RVPTLALPGR+ LA+ CE A+LALPWV SA ALTK RRPR
Sbjct:  110 RRHMSLWGG--WGQGTSGGPNSSPEEELARRWRQEKEEEVLAILSGVVEPCTGKDVVELGFVQDVRIDEVVHGEQPQDNTGEDSAEAPLAISFTLRVPTLALPGRDTLASECEAALLALPWVASANALTKVRRPR 242
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BLAST of mRNA_F-serratus_M_contig1517.3553.1 vs. uniprot
Match: E8PMA3_THESS (Metal-sulfur cluster biosynthetic enzyme n=19 Tax=Thermaceae TaxID=188786 RepID=E8PMA3_THESS)

HSP 1 Score: 51.6 bits (122), Expect = 8.290e-5
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 3 
Query:  408 RHVSPFAGGSWGKQEPGAADGEVREIARREEEVLEALAAVHEPCTNKEVVQLGLVQDLHIGDEGAVTFTVRVPTLALPGRNELAAACEKAVLALPWV 698
            RH      G  G QE  A     +E    +E+VLEAL  V++P     +V LGLV D+ I + G V  T+ +  +  P ++ + A  E AV+ LP V
Sbjct:    4 RHREGLPEGQAGLQEGNANQAGGKEGLPTKEQVLEALKVVYDPEIPVNIVDLGLVYDVEIHENGVVDLTMTLTAIGCPAQDMVKADAEMAVMRLPGV 100
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BLAST of mRNA_F-serratus_M_contig1517.3553.1 vs. uniprot
Match: UPI00036B0FE7 (iron-sulfur cluster assembly protein n=1 Tax=Thermus scotoductus TaxID=37636 RepID=UPI00036B0FE7)

HSP 1 Score: 51.6 bits (122), Expect = 8.620e-5
Identity = 36/101 (35.64%), Postives = 51/101 (50.50%), Query Frame = 3 
Query:  408 RHVSPFAGGSWGKQEPGAADGEVREIARREEEVLEALAAVHEPCTNKEVVQLGLVQDLHIGDEGAVTFTVRVPTLALPGRNELAAACEKAVLALP-WVTSA 707
            RH      G  G QE  A     +E    +E+VLEAL  V++P     +V LGLV D+ I + G V  T+ +  +  P ++ + A  E AV+ LP W  SA
Sbjct:    4 RHREGLPEGQAGLQEGNANQAGGKEGLPTKEQVLEALKVVYDPEIPVNIVDLGLVYDVEIHENGVVDLTMTLTAIGCPAQDMVKADAEMAVMRLPIWHPSA 104
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1517.3553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LK11_ECTSI1.120e-2049.63GBBH-like_N domain-containing protein n=2 Tax=Ecto... [more]
E8PMA3_THESS8.290e-535.05Metal-sulfur cluster biosynthetic enzyme n=19 Tax=... [more]
UPI00036B0FE78.620e-535.64iron-sulfur cluster assembly protein n=1 Tax=Therm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1517contigF-serratus_M_contig1517:74345..75966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue3.9e-19
Seed eggNOG ortholog2880.D8LK11
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Component of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
EggNOG OGsCOG0489@1,KOG3022@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size773
Cds size732
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1517.3553.1prot_F-serratus_M_contig1517.3553.1Fucus serratus malepolypeptideF-serratus_M_contig1517 74345..75925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.4718761-CDS-F-serratus_M_contig1517:74344..745261622929501.4718761-CDS-F-serratus_M_contig1517:74344..74526Fucus serratus maleCDSF-serratus_M_contig1517 74345..74526 -
1690962881.4642963-CDS-F-serratus_M_contig1517:74344..745261690962881.4642963-CDS-F-serratus_M_contig1517:74344..74526Fucus serratus maleCDSF-serratus_M_contig1517 74345..74526 -
1622929501.493354-CDS-F-serratus_M_contig1517:75375..759251622929501.493354-CDS-F-serratus_M_contig1517:75375..75925Fucus serratus maleCDSF-serratus_M_contig1517 75376..75925 -
1690962881.4761157-CDS-F-serratus_M_contig1517:75375..759251690962881.4761157-CDS-F-serratus_M_contig1517:75375..75925Fucus serratus maleCDSF-serratus_M_contig1517 75376..75925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.5116746-UTR-F-serratus_M_contig1517:75925..759661622929501.5116746-UTR-F-serratus_M_contig1517:75925..75966Fucus serratus maleUTRF-serratus_M_contig1517 75926..75966 -
1690962881.4872084-UTR-F-serratus_M_contig1517:75925..759661690962881.4872084-UTR-F-serratus_M_contig1517:75925..75966Fucus serratus maleUTRF-serratus_M_contig1517 75926..75966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1517.3553.1

>prot_F-serratus_M_contig1517.3553.1 ID=prot_F-serratus_M_contig1517.3553.1|Name=mRNA_F-serratus_M_contig1517.3553.1|organism=Fucus serratus male|type=polypeptide|length=244bp
MLPATKAGSMASFTKMWCKGRIVYVGIRERSILPSADAYVRGNADLAINS
RQQSCSGTKQGPVISSPVSLYGSMTAGNPILGTIRWRTLSTLISRHRIRT
HRTATCSFPSKTWRGLDVSNSRRHVSPFAGGSWGKQEPGAADGEVREIAR
REEEVLEALAAVHEPCTNKEVVQLGLVQDLHIGDEGAVTFTVRVPTLALP
GRNELAAACEKAVLALPWVTSAAALTKARRPRRQQPNSARPKMG
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mRNA from alignment at F-serratus_M_contig1517:74345..75966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1517.3553.1 ID=mRNA_F-serratus_M_contig1517.3553.1|Name=mRNA_F-serratus_M_contig1517.3553.1|organism=Fucus serratus male|type=mRNA|length=1622bp|location=Sequence derived from alignment at F-serratus_M_contig1517:74345..75966- (Fucus serratus male)
CATTAGTGCTGTAGGCTCACTAGAAGCTGTCAACGGCAGGAATGCTCCCC
GCAACCAAGGCGGGATCAATGGCGTCCTTCACAAAGATGTGGTGCAAGGG
TCGAATAGTCTACGTTGGAATTAGGGAAAGGAGCATTTTACCGTCGGCGG
ACGCTTATGTTCGAGGGAATGCCGATCTCGCTATTAATAGTAGACAGCAG
TCGTGTAGCGGGACAAAACAAGGCCCTGTAATTAGCTCACCCGTCAGCCT
TTACGGCAGCATGACGGCCGGCAACCCAATCTTAGGCACTATTCGATGGA
GGACGCTCTCGACACTGATCTCTCGACACCGAATACGTACACACCGTACT
GCGACGTGCTCGTTCCCCTCGAAGACTTGGCGCGGCCTCGATGTCAGCAA
CAGCAGAAGACACGTCTCGCCATTCGCCGGTGGCAGCTGGGGAAAGCAAG
AGCCTGGTGCAGCGGACGGTGAGGTACGAGAAATCGCTCGTCGTGAGGAA
GAAGTGCTAGAAGCTCTAGCTGCCGTACATGAACCATGCACGAACAAGGA
GGTGGTACAGCTGGGGCTGGTGCAAGATCTGCACATTGGCGGTGGGTTTG
ATACTCTACAGCACTTGCCAAAAACTCCCCCTTTCTAGGATATACTGATG
CAACAGAAGGTCTACGTGCGTTCTGTATTTTCTTCAAAGAGCAAATCCCA
CCTAAACGTTTTGACATTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTC
TAGGCTCGTTCTGATTTTCTTCAAACACCCTCGGGCCCGTTGCCACCACC
TGTCTGATCATCTAGAGCCAAAGAGTAGATGCCTGTTAAGGTTGCCAATC
CTGTAAAACAGAGAAAATAATATTCCCCTGACTCACAGCTTGATATCTTT
ACTCATTACTTCCTTGCTTGTTCATATCTCGCACTGAAAATTCTCCGATT
AGCCCTTGGACTGCAACAAGGTAGCACGGCGTTCTATGCGGCGCATTGCT
GCCCCCTGCCCCCTGTTCTGTGACCTACAATCTACGAACAGCAGTGCCAG
TAATTGTCAGCTGTGCGTCGCCGTTCAAATCTAGTTCGGTCTGTCTATGT
GGGTTTATATTGTCGTGTTAAGAAAGACACCCTAACTTACAGTAAGGGCA
GTATAAAAAGTCCTGTTGATGGCGTGGATTTGCTGTCCCATCATATCGTG
GTTCCCGGGGCGTACTGCTGGAGCGCTAGCTCGGCATCGTATTCTGCCCC
CTTTCTCTTCAAGCGGCAGTTTCTTCCCGGCATATTATTACAGTAGTCTT
ACTCTGTCGCGTATTCTTCGAAGTGCCCTGCATTGTGAGAAGCCCCAAAT
TTTCTGCCAACGTCCCCCGACCCCCTTCCCCCCTTCCCAAAAATTGAAAA
ATCCGCCACCACAACCCCAACGAACGAACATCGAGAGAAGACGAAGGTGC
GGTGACCTTCACGGTGCGAGTACCAACCCTGGCGCTTCCGGGGCGCAACG
AGCTAGCCGCGGCGTGCGAGAAAGCCGTGCTCGCCCTTCCGTGGGTCACG
TCTGCGGCTGCATTGACCAAGGCCCGAAGACCGCGCCGACAACAGCCGAA
CTCCGCGCGACCTAAAATGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1517:74345..75966-

>mRNA_F-serratus_M_contig1517.3553.1 ID=mRNA_F-serratus_M_contig1517.3553.1|Name=mRNA_F-serratus_M_contig1517.3553.1|organism=Fucus serratus male|type=CDS|length=1464bp|location=Sequence derived from alignment at F-serratus_M_contig1517:74345..75966- (Fucus serratus male)
ATGCTCCCCGCAACCAAGGCGGGATCAATGGCGTCCTTCACAAAGATGTG
GTGCAAGGGTCGAATAGTCTACGTTGGAATTAGGGAAAGGAGCATTTTAC
CGTCGGCGGACGCTTATGTTCGAGGGAATGCCGATCTCGCTATTAATAGT
AGACAGCAGTCGTGTAGCGGGACAAAACAAGGCCCTGTAATTAGCTCACC
CGTCAGCCTTTACGGCAGCATGACGGCCGGCAACCCAATCTTAGGCACTA
TTCGATGGAGGACGCTCTCGACACTGATCTCTCGACACCGAATACGTACA
CACCGTACTGCGACGTGCTCGTTCCCCTCGAAGACTTGGCGCGGCCTCGA
TGTCAGCAACAGCAGAAGACACGTCTCGCCATTCGCCGGTGGCAGCTGGG
GAAAGCAAGAGCCTGGTGCAGCGGACGGTGAGGTACGAGAAATCGCTCGT
CGTGAGGAAGAAGTGCTAGAAGCTCTAGCTGCCGTACATGAACCATGCAC
GAACAAGGAGGTGGTACAGCTGGGGCTGGTGCAAGATCTGCACATTGGCG
ATGCTCCCCGCAACCAAGGCGGGATCAATGGCGTCCTTCACAAAGATGTG
GTGCAAGGGTCGAATAGTCTACGTTGGAATTAGGGAAAGGAGCATTTTAC
CGTCGGCGGACGCTTATGTTCGAGGGAATGCCGATCTCGCTATTAATAGT
AGACAGCAGTCGTGTAGCGGGACAAAACAAGGCCCTGTAATTAGCTCACC
CGTCAGCCTTTACGGCAGCATGACGGCCGGCAACCCAATCTTAGGCACTA
TTCGATGGAGGACGCTCTCGACACTGATCTCTCGACACCGAATACGTACA
CACCGTACTGCGACGTGCTCGTTCCCCTCGAAGACTTGGCGCGGCCTCGA
TGTCAGCAACAGCAGAAGACACGTCTCGCCATTCGCCGGTGGCAGCTGGG
GAAAGCAAGAGCCTGGTGCAGCGGACGGTGAGGTACGAGAAATCGCTCGT
CGTGAGGAAGAAGTGCTAGAAGCTCTAGCTGCCGTACATGAACCATGCAC
GAACAAGGAGGTGGTACAGCTGGGGCTGGTGCAAGATCTGCACATTGGCG
ACGAAGGTGCGGTGACCTTCACGGTGCGAGTACCAACCCTGGCGCTTCCG
GGGCGCAACGAGCTAGCCGCGGCGTGCGAGAAAGCCGTGCTCGCCCTTCC
GTGGGTCACGTCTGCGGCTGCATTGACCAAGGCCCGAAGACCGCGCCGAC
AACAGCCGAACTCCGCGCGACCTAAAATGGGCACGAAGGTGCGGTGACCT
TCACGGTGCGAGTACCAACCCTGGCGCTTCCGGGGCGCAACGAGCTAGCC
GCGGCGTGCGAGAAAGCCGTGCTCGCCCTTCCGTGGGTCACGTCTGCGGC
TGCATTGACCAAGGCCCGAAGACCGCGCCGACAACAGCCGAACTCCGCGC
GACCTAAAATGGGC
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