mRNA_F-serratus_M_contig1514.3544.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1514.3544.1
Unique NamemRNA_F-serratus_M_contig1514.3544.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.610e-40
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYST 273
            +QRIAIARAI++NP ILLLDEATSALDNESEKVVQEALD+LQ +QKRTTLTVAHRLTTIRNSDKIAVLN GGVQELGTHDELLA K LYST
Sbjct: 1191 KQRIAIARAILRNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAVLNGGGVQELGTHDELLALKGLYST 1281          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.040e-39
Identity = 81/91 (89.01%), Postives = 85/91 (93.41%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYST 273
            +QRIAIARAI+ NP ILLLDEATSALDNESEKVVQEALD+LQ +QKRTTLTVAHRLTTIRNSDKIAVLN GGVQELGTHDELLA K LYST
Sbjct: 1102 KQRIAIARAILNNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAVLNGGGVQELGTHDELLALKGLYST 1192          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A6H5JWI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 5.870e-37
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 1
Query:   22 RAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYS 270
            RAI++NP ILLLDEATSALDNESEKVVQEALD+LQ +QKRTTLTVAHRLTTIRNSDKIAVLN GGVQELGTHDELLA K LYS
Sbjct:  308 RAILRNPPILLLDEATSALDNESEKVVQEALDQLQAKQKRTTLTVAHRLTTIRNSDKIAVLNGGGVQELGTHDELLALKGLYS 390          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A7R9WM24_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WM24_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.750e-33
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALY 267
            RQRIAI+RAI+ NP IL+LDEATSALDNESEK+VQ ALD LQ +Q RTTL VAHRL T++N  KIAVL+ GGV+ELG+HDELL  K LY
Sbjct:  101 RQRIAISRAIVSNPKILVLDEATSALDNESEKIVQAALDDLQEKQPRTTLVVAHRLGTVKNCTKIAVLDRGGVRELGSHDELLELKGLY 189          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A7S0J429_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J429_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 7.820e-32
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYS 270
            +QR+AIARA+++ P++LLLDEATSALDNESEKVVQ ALD +   QKRTT+ +AHR++TIRN+D IAVL EG V E GTHDELLA   LY+
Sbjct:   66 KQRVAIARALVRQPAVLLLDEATSALDNESEKVVQAALDSIMAAQKRTTVMIAHRISTIRNADLIAVLKEGAVLEQGTHDELLANLNLYA 155          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: K8Z129_NANGC (ABC transporter domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z129_NANGC)

HSP 1 Score: 122 bits (305), Expect = 1.280e-31
Identity = 63/90 (70.00%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYS 270
            +QRIAIARAIIKNP+ILLLDEATSALD+ SEK+VQEALD L   +KRTT  VAHRL+TIR +DKIAV+++G V+ELG+H+EL+AR+ +Y+
Sbjct:   72 KQRIAIARAIIKNPAILLLDEATSALDSHSEKIVQEALDNLARSKKRTTFVVAHRLSTIREADKIAVIDKGQVKELGSHEELMARQGIYA 161          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A1V9YIR4_9STRA (ATP-binding Cassette (ABC) superfamily (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YIR4_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.720e-31
Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALY 267
            +QRIAIARAIIKNP ILLLDEATSALD+ESEKVVQEALDKL T++ RTTL +AHRL+TIR++DKI V+++G + E GTHDEL+ +  +Y
Sbjct:  178 KQRIAIARAIIKNPPILLLDEATSALDSESEKVVQEALDKLLTEKGRTTLLIAHRLSTIRSADKICVVSDGCIAEEGTHDELVQKNGIY 266          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A329SWJ2_9STRA (ABC transporter domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SWJ2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.780e-31
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYS 270
            +QRIAIARAI+KNP+ILLLDEATSALD+ESEKVVQEALDK+   ++RTT+ +AHRL+TIR +DKI V++ G + E GTH EL+  K +Y+
Sbjct:   31 KQRIAIARAILKNPNILLLDEATSALDSESEKVVQEALDKVVALKRRTTIIIAHRLSTIRKADKICVVSGGNIAEQGTHQELIKLKGIYA 120          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A818ZLH4_9BILA (Hypothetical protein n=2 Tax=Adineta steineri TaxID=433720 RepID=A0A818ZLH4_9BILA)

HSP 1 Score: 113 bits (282), Expect = 1.010e-30
Identity = 61/90 (67.78%), Postives = 77/90 (85.56%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYS 270
            RQRIAIARA+I+NP ILLLDEATSALDN+SEKVVQ  LD  Q +  RT +T+AHRL+TI+NS+KIAV+N G ++E GTH+ELLA++ LY+
Sbjct:   14 RQRIAIARALIRNPKILLLDEATSALDNKSEKVVQSTLD--QARVGRTCVTIAHRLSTIKNSEKIAVVNRGRLREEGTHEELLAKRGLYT 101          
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.140e-30
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTLTVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLA 252
            +QRIAIARAI++NP+ILLLDEATSALDNESE+ VQ ALD LQ+ Q+RTTL VAHRLTTIRN+DKIAVL  G V+ELGTHDEL+A
Sbjct: 1119 KQRIAIARAILRNPNILLLDEATSALDNESERQVQAALDHLQSLQRRTTLVVAHRLTTIRNADKIAVLGTGAVRELGTHDELMA 1202          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1514.3544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHL1_ECTSI5.610e-4089.01ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]
D7FHL4_ECTSI1.040e-3989.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWI0_9PHAE5.870e-3789.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9WM24_9STRA5.750e-3373.03Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0J429_9EUKA7.820e-3267.78Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
K8Z129_NANGC1.280e-3170.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1V9YIR4_9STRA2.720e-3170.79ATP-binding Cassette (ABC) superfamily (Fragment) ... [more]
A0A329SWJ2_9STRA7.780e-3165.56ABC transporter domain-containing protein n=3 Tax=... [more]
A0A818ZLH4_9BILA1.010e-3067.78Hypothetical protein n=2 Tax=Adineta steineri TaxI... [more]
A0A836CGZ9_9STRA1.140e-3078.57ATP-binding cassette, sub-family B, member 1A n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1514contigF-serratus_M_contig1514:5846..6746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue9.4e-35
Seed eggNOG ortholog2880.D7FHL1
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929499.580339-CDS-F-serratus_M_contig1514:5845..59441622929499.580339-CDS-F-serratus_M_contig1514:5845..5944Fucus serratus maleCDSF-serratus_M_contig1514 5846..5944 +
1690962880.3558576-CDS-F-serratus_M_contig1514:5845..59441690962880.3558576-CDS-F-serratus_M_contig1514:5845..5944Fucus serratus maleCDSF-serratus_M_contig1514 5846..5944 +
1622929499.5961137-CDS-F-serratus_M_contig1514:6569..67461622929499.5961137-CDS-F-serratus_M_contig1514:6569..6746Fucus serratus maleCDSF-serratus_M_contig1514 6570..6746 +
1690962880.3710992-CDS-F-serratus_M_contig1514:6569..67461690962880.3710992-CDS-F-serratus_M_contig1514:6569..6746Fucus serratus maleCDSF-serratus_M_contig1514 6570..6746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1514.3544.1prot_F-serratus_M_contig1514.3544.1Fucus serratus malepolypeptideF-serratus_M_contig1514 5846..6746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1514.3544.1

>prot_F-serratus_M_contig1514.3544.1 ID=prot_F-serratus_M_contig1514.3544.1|Name=mRNA_F-serratus_M_contig1514.3544.1|organism=Fucus serratus male|type=polypeptide|length=92bp
RQRIAIARAIIKNPSILLLDEATSALDNESEKVVQEALDKLQTQQKRTTL
TVAHRLTTIRNSDKIAVLNEGGVQELGTHDELLARKALYST*
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mRNA from alignment at F-serratus_M_contig1514:5846..6746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1514.3544.1 ID=mRNA_F-serratus_M_contig1514.3544.1|Name=mRNA_F-serratus_M_contig1514.3544.1|organism=Fucus serratus male|type=mRNA|length=901bp|location=Sequence derived from alignment at F-serratus_M_contig1514:5846..6746+ (Fucus serratus male)
CGTCAGCGAATCGCCATCGCCCGTGCCATCATCAAGAACCCTTCCATTCT TCTGTTGGACGAGGCTACGTCGGCTCTTGACAACGAGAGCGAGAAAGTGG TGAGTCGGTCGGCAGGTGTTTTACGATGAACGTTTTACGGTAATTGTCAG GCGTTTTACAGGAGGCACAATTAGAAGCTACCAGTAGCCTGTACTTCGTT TTGGAAATTAAAAAAATCGTGCCTGTGATTAACGATCACAAGGATCGTAT CTAACTTCATCAAGTGTAAATCTGGAGGTGATTGCTCTACAGCAGAGTAT TGCAACTATTTGTGTACTTTTGGAATAAAAATTCTTGATATTCTTCATGC ACTTTTTTTTTTGGCTCTGCATAAACCAGGCGCACGACATATATCGTCAG TTCCGTAATGTCAATAATATTTTATTGGTCATAAGTAGATAATCAGCGTC GCATTCGATCCCACGCACTCGCCGCGTCGCGCGGATACGGAATTTTGAGC GCGGTCTGAATCGCTTCTGTCTCCATTTGTATTATGTTCACGGTGGATTC AGATCCTTGCTTGGCTTGTTTAGTATATATATATATATATATATATATAT ATATATATATTTGTATATACTTCGTACGTGGTATATATATACCAGGGTAT ATATATATTATTTTATGTTATTCTTTCACGAAACTTATCTTAATAACACG AAAAAACTACTCATCAACGCGCAGGTGCAAGAGGCCCTGGATAAGCTCCA GACTCAACAGAAGCGCACTACCCTGACGGTGGCGCACCGCCTTACCACGA TCCGCAACTCCGATAAGATTGCTGTGCTCAACGAGGGTGGCGTGCAGGAG CTCGGCACACACGATGAGCTCCTAGCCCGCAAGGCCTTGTACTCCACGTG A
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Coding sequence (CDS) from alignment at F-serratus_M_contig1514:5846..6746+

>mRNA_F-serratus_M_contig1514.3544.1 ID=mRNA_F-serratus_M_contig1514.3544.1|Name=mRNA_F-serratus_M_contig1514.3544.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig1514:5846..6746+ (Fucus serratus male)
CGTCAGCGAATCGCCATCGCCCGTGCCATCATCAAGAACCCTTCCATTCT
TCTGTTGGACGAGGCTACGTCGGCTCTTGACAACGAGAGCGAGAAAGTGC
GTCAGCGAATCGCCATCGCCCGTGCCATCATCAAGAACCCTTCCATTCTT
CTGTTGGACGAGGCTACGTCGGCTCTTGACAACGAGAGCGAGAAAGTGGT
GCAAGAGGCCCTGGATAAGCTCCAGACTCAACAGAAGCGCACTACCCTGA
CGGTGGCGCACCGCCTTACCACGATCCGCAACTCCGATAAGATTGCTGTG
CTCAACGAGGGTGGCGTGCAGGAGCTCGGCACACACGATGAGCTCCTAGC
CCGCAAGGCCTTGTACTCCACGTGAGTGCAAGAGGCCCTGGATAAGCTCC
AGACTCAACAGAAGCGCACTACCCTGACGGTGGCGCACCGCCTTACCACG
ATCCGCAACTCCGATAAGATTGCTGTGCTCAACGAGGGTGGCGTGCAGGA
GCTCGGCACACACGATGAGCTCCTAGCCCGCAAGGCCTTGTACTCCACGT
GA
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