mRNA_F-serratus_M_contig1510.3534.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: D7FPZ9_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ9_ECTSI) HSP 1 Score: 172 bits (437), Expect = 9.110e-44 Identity = 114/252 (45.24%), Postives = 142/252 (56.35%), Query Frame = 3
Query: 3276 VLPPAIRRIMSEEMVRVLTLRRRDLHAVARQSPGLLNEAVEQAFLMLENAVSTAATHSHALCNMGRLLEDRENPDEALLCFEEASAVDPASAEALCLRAGNLQRRGDLVGATRHFERALVQGKFFGLACYGLSQVNAVQGKYAGAIGALVHWLD----------EQNKQCSGSGEPDRAS----QAKGLVQLGDAYRGLGQDECAQRAYQRAIEMDGGCSEAYFKLGSLLQAQGGRDAEALEAFGRAVNAAA 3989
+LP I R++ EE+ RVL L RRDL VAR SP LL AV ++F M E AV TAA SHAL NMGRLLEDR +PDEALLCF+EAS D + + A GL QV Q KYA A+ A WL E SG+ + ++ + AKGLVQLG+A+ LGQD+ A+ AY+RA+ D CSEA+F+LG+LLQ + G+DAEAL+AF AV AAA
Sbjct: 51 LLPAPIARVLHEEVFRVLALNRRDLDIVARVSPELLQSAVVKSFWMFEEAVFTAAARSHALSNMGRLLEDRGHPDEALLCFQEASTADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDESHWSAWCGLGQVKGAQAKYAEAVEAFSKWLQGGGGGEGGAAENGNTGSGAPQAEKVAGARFMAKGLVQLGEAHVKLGQDKQARSAYERAVSADENCSEAHFQLGTLLQ-RCGQDAEALKAFASAVKAAA 301
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: A0A482S8G9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8G9_9ARCH) HSP 1 Score: 107 bits (268), Expect = 2.540e-21 Identity = 67/231 (29.00%), Postives = 123/231 (53.25%), Query Frame = 3
Query: 648 YPRLMSVIVGIDD-LDPQLKTLSWVVRLMDELYDARRRADQASFAAEEDYCNLDARTRKNVSFPLFAYKHLKNRHGIKYVVRAACLDLVCNTHIYRKRHSGVEVFARFLEEFYGMKELCFYLDIRAEAHRVARVCPRRRSVI--------KTVWMTHADCVRVAKGVFLDTSTLYFRDLIGTVESQMMDRPLERSQSNPDKRRISLSDFLYLAMVCFVSPEEPKEGSGREN 1313
YPR S+I D + P+L+ LSW+++ ++++YDAR ++ E+D D + FP+F + + G+K ++ C D++ + + YR+ + +E+FARFL+EFY +L FYL +R+ +V V + R V ++ WM++ + V +A+ VF S +RD I + QM+ + + D RRI ++++L+L++V + + G G N
Sbjct: 112 YPRFSSLIANRGDTVKPKLRPLSWLMKHVEDVYDARFEHEKNEVEREDDSPAFDLIL---LIFPIFVVRKVGTNVGLKSLLDQMCWDILHSVNTYRRDYLELEIFARFLQEFYDHDDLLFYLYVRSVISKVLHVNFKNRWVKFDGPGRQPRSQWMSYREAVHIARIVFGSDSEDMYRDFILLITPQMIGSKTDTT----DTRRIDITEYLHLSVVGYHQNSKRGGGGGEPN 335
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: A0A7S3HLQ1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLQ1_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.030e-19 Identity = 63/233 (27.04%), Postives = 126/233 (54.08%), Query Frame = 3
Query: 603 LNVVHVAGQAVTLSLYPRLMSVIVGIDD-LDPQLKTLSWVVRLMDELYDARRRADQASFAAEEDYCNLDARTRKNVSFPLFAYKHLKNRHGIKYVVRAACLDLVCNTHIYRKRHSGVEVFARFLEEFYGMKELCFYLDIRAEAHRVARVCPRRR---------SVIKTVWMTHADCVRVAKGVFLDTSTLYFRDLIGTVESQMMDRPLERSQSNPDKRRISLSDFLYLAMVCF 1271
++V VA + + + YPR ++I D + P+ + +WV++++++++D R ++ E++ + D + FP+F + + G+K +V C DL+ N ++YRK + +EVF RFL+EFY +L F+L +R+ +V + + R K +W+++ + VA+ VF + FRD + + QM+ E++ S D RRI ++++L+L++V +
Sbjct: 93 IDVTVVAPEHLEYNAYPRFTALIANNGDTVRPRQRPFTWVMKIVEDIFDHRFSLEKNDIEREDESPSFDLML---LIFPVFVVRKIGTNVGLKTIVDQTCWDLLYNVNLYRKDYLELEVFGRFLQEFYDHDDLLFFLYVRSVLAKVLHISFKARWQKKFDGVSGQPKALWISYKEAAHVARIVFGSDNEGLFRDFMRLITPQMVG---EKTASG-DSRRIDITEYLHLSVVGY 318
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: A0A812U9B1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U9B1_9DINO) HSP 1 Score: 102 bits (254), Expect = 4.410e-18 Identity = 66/200 (33.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query: 642 SLYPRLMSVIVGIDDLDPQLKTLSWVVRLMDELYDARRRADQASFAAE-EDYCNLDA---RTRKNVSFPLFAYKHLKNRHGIKYVVRAACLDLVCNTHIYRKRHSGVEVFARFLEEFYGMKELCFYLDIRAEAHRVARVCPRRR------SVI------KTVWMTHADCVRVAKGVFLDTSTLYFRDLIGTVESQMMDRP 1193
S+YP+ S+I D++ P+L+ LSW++RL++E+YD R D A E E A ++R FP F + R+G+ ++ C DL+ N H RK + VEVFARFLEE+Y +L F+L +R+ + R R R SV+ K ++M+ +C VA+ VF +R + V+S++ P
Sbjct: 96 SVYPKFYSLISLRDNIAPKLRPLSWLMRLIEEIYDNRYARDTAELREEAEGAAGATAAPPKSRGPSDFPSFVVEFFSKRYGLPQLIDQTCWDLLYNVHAARKEYLEVEVFARFLEEYYDPDDLLFFLYVRSVVQKELRFTFRSRWTELGKSVLGADKTPKAIFMSQRECQLVARVVFGAEGDPLYRTFMALVDSRLQAGP 295
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: A0A835ZCA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA1_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 4.520e-16 Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = 3
Query: 612 VHVAGQAVTLSLYPRLMSVIVGIDDLDPQLKTLSWVVRLMDELYDARRRADQASFAAEEDYCNLDARTRKNVSFPLFAYKHLKNRHGIKYVVRAACLDLVCNTHIYRKRHSGVEVFARFLEEFYGMKELCFYLDIRAEAHRVARVCPRRRSVIKTVWMTHADCVRVAKGV 1121
V + V L +YP+ + P+ + LSWV++ +D++YDA A A +DY FP F Y+ + R+G K +V ACL+LVC ++R R+S VE+FAR LEE+Y +EL + +RA V V K +W+ C+ A+ +
Sbjct: 15 VSLGSHTVDLRVYPKFREIAAADPSCAPRRRALSWVLKSIDDIYDAYAAAAAAWEQQAQDYLTEPRPPPCETGFPPFVYRFWRKRYGSKALVLQACLELVCCVDLWRTRNSDVELFARLLEEYYTTQELTCIVGLRAALRDVVGVH------WKQLWLGGQACIPYARAL 178
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: A0A2R5G9E0_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9E0_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.840e-10 Identity = 42/125 (33.60%), Postives = 72/125 (57.60%), Query Frame = 3
Query: 648 YPRLMSVIVGIDDLDPQLKTLSWVVRLMDELYDARRRADQASFAAEEDYCNLDARTRKNVSFPLFAYKHLKNRHGIKYVVRAACLDLVCNTHIYRKRHSGVEVFARFLEEFYGMKELCFYLDIRA 1022
Y + S+I D L+P+ ++L W+ L++++YD D+A+ ++ D L FP+F HL R+G++ ++ D+V + H +R+ VEVFARFLEE+Y ++L FYL +R+
Sbjct: 162 YSKFCSLIEMRDKLEPRPRSLKWLNGLINDVYD-----DRAAVKSKYDLEELRI-------FPVFVMDHLGKRYGLRQIIDQVAWDMVLSVHTHRRHRIEVEVFARFLEEYYDREDLRFYLRVRS 274
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Match: A0A0L0DVL3_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVL3_THETB) HSP 1 Score: 66.2 bits (160), Expect = 4.290e-7 Identity = 65/295 (22.03%), Postives = 115/295 (38.98%), Query Frame = 3
Query: 648 YPRLMSVIVGIDDLDPQLKTLSWVVRLMDELYDARRRADQASFAAEEDYCNLDARTRKN----------------------VSFPLFAYKHLKNRHGIKYVVRAACLDLVCNTHIYRKRHSGVEVFARFLEEFYGMKELCFYLDIRAEAHRVARVCPRRRSVIKTVWMTHADCVRVAKGVFLDTSTLYFRDLIGTVESQMMDRPLERSQSNPDKRRISLSDFLYLAMVCFVSPEEPKEGSGRENCKGGTGHTPREGSELGKQSTGVVCVPCVDTPVSALTKSSSLDARRFCCAAR 1466
Y ++ + ++ + + W++ ++E+YDAR D+ ++ +L AR RK + FP F YK+ +N+ G+ +V+ D V N R +EVF FLE FY + +L F+L R + + R + + + + VF+ L + V + RP ++ ++ + L + L LA++ F P E +G + R GS+ G ++ D VSA S+ R AAR
Sbjct: 115 YEEFCKLVGDVSEMRTRRHAVPWLLTQIEEIYDARHAYDEHYETKRAEFIHL-ARRRKYPRGAPPGVDLALTAAELGMEPALGFPEFVYKYFQNKFGLDALVKQNLWDFVYNVETLRPVFLEIEVFGNFLESFYDVTDLQFFLHARIQLYSRFRKVGQATEATSLQMVPVKRLPALIETVFVHKPKLMSASYMVVVRHYVSKRPAKQQKA------LELQEVLNLALILFHKTR-PDEVTGEVDP---AWDPERAGSDFGDDASFTDDGTLTDGSVSANDSQLSVAERNAARAAR 398 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1510.3534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1510.3534.1 >prot_F-serratus_M_contig1510.3534.1 ID=prot_F-serratus_M_contig1510.3534.1|Name=mRNA_F-serratus_M_contig1510.3534.1|organism=Fucus serratus male|type=polypeptide|length=1211bp MLSDDVAVSDGMVCSDSDRQAGVSPKRDDWRRDRRLDTEEGRSDHHIGAEback to top mRNA from alignment at F-serratus_M_contig1510:106768..121308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1510.3534.1 ID=mRNA_F-serratus_M_contig1510.3534.1|Name=mRNA_F-serratus_M_contig1510.3534.1|organism=Fucus serratus male|type=mRNA|length=14541bp|location=Sequence derived from alignment at F-serratus_M_contig1510:106768..121308- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1510:106768..121308- >mRNA_F-serratus_M_contig1510.3534.1 ID=mRNA_F-serratus_M_contig1510.3534.1|Name=mRNA_F-serratus_M_contig1510.3534.1|organism=Fucus serratus male|type=CDS|length=7266bp|location=Sequence derived from alignment at F-serratus_M_contig1510:106768..121308- (Fucus serratus male)back to top |