mRNA_F-serratus_M_contig1509.3527.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 328 bits (842), Expect = 2.640e-110 Identity = 157/262 (59.92%), Postives = 192/262 (73.28%), Query Frame = 2
Query: 89 IMARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGES-RFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFEEETSMSFRF 871
+M R V LAC ++G A LEV P G + V+ YTVEW GTG + RFEIDLYYC S CMED+CGEWVT LCPYGE GCPD+ GDYD+ MPEPMSGTS GYK+RVAD++DE S DCS+ F L+ + P+ S+A GP++ VTSP GD AEA EYTVE+DYD+G GS+ GRF IDLY A GSGDCGTF TLCDK +IGCKD+ GDYDV P D G Y +RVG F+D++ +GCSD F +LG+ +++SMS+RF
Sbjct: 1 MMVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA----DDSSMSYRF 258
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 328 bits (840), Expect = 4.960e-110 Identity = 155/260 (59.62%), Postives = 187/260 (71.92%), Query Frame = 2
Query: 92 MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFEEETSMSFRF 871
MAR V LACA++GAA LEV P+ I VAD YTVEW G RFEIDLY+CGS CMED CG+WVT LCPYGE GCPD+ GDYD+ MPEPMSG SN GYK+RV D++DE S+DCS+ F L+ SE+ P G FL VTSP +GD AEA EYTVE+DYD+G GS RF+IDLY ADG GDCGT+ ++CDK SIGCKD+ GDYDV P D G+YK+RVG F+D+ +GCS TF ++G ++ SMS+ F
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGG----DDESMSYDF 256
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 325 bits (833), Expect = 8.370e-109 Identity = 155/267 (58.05%), Postives = 190/267 (71.16%), Query Frame = 2
Query: 92 MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTG-ESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTT------FEEETSMSFRF 871
M R V LAC ++GAA L+V+ P++G +AD YTVEW GT ++RFEIDLYYCGS CMEDDCG+WVT LCPYGE GCPD+ GDYD+ MPEPM GTS GYK+RV DI+DE DCS+ F LL S E P+V + DGP L VTSP GD+A C EYTVE+DYD+G GS+ RF IDLY ADG GDCGT+ ++CDK +IGCKD+ GDYDV PCD + GEYK+RV F+DD+ + CS TF + E+ S+S+RF
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 317 bits (812), Expect = 1.700e-105 Identity = 149/235 (63.40%), Postives = 177/235 (75.32%), Query Frame = 2
Query: 131 IGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGES-RFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGS 832
+GAA LEV P EG I VA YTVEW GTG + R+EIDLYYCGS CMED+CG+WVT LCPYGE GCPD+ GDYD+ MPEPMSGTS GYK+RVAD++D+ S DCS+ F L+ E P+ +A GP++ VTSP GD AEA EYTVE+DYD+G GS+ GRF IDLY A GSGDCGTF TLCDK +IGCKD+ GDYDV P D G Y +RVG F+DD+ +GCSD F +LG+
Sbjct: 2 LGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 303 bits (776), Expect = 2.260e-100 Identity = 150/260 (57.69%), Postives = 182/260 (70.00%), Query Frame = 2
Query: 92 MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFEEETSMSFRF 871
MAR A LA ++GAA LEV P G + VADS YTVEW G R++IDLYYCGS CMED+CG+WVT LCPYG+ GCPD+ GDYDV MPEPM GTS+ GYK+ V D +DE+ CS FTL+ S E P ++ G ++ VTSP DGD A A EYTVE+DYD+G GS+ RF IDLY + GSGDCGT+ T+CDK SIGCKD+QGDYDV P +G Y +RVGVF+DD +GCSD+F ++G SMS RF
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE------SMSVRF 252
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 298 bits (763), Expect = 2.270e-98 Identity = 153/260 (58.85%), Postives = 178/260 (68.46%), Query Frame = 2
Query: 92 MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYE-ADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFEEETSMSFR 868
MAR A LA ++GAA LEV P G +AD YTVEW GT +SRFEIDLYYCGSFCMED+CG+WVT LCPYG GCPD+ GDYD+ MPEPM+GTS+ GYK+ V D NDE+S+ CS FTL+ S + P E G L VTSP DGD A A YTVEWDY++G GS+ RF IDLY G+GDCGT+ ATLCDK SIGC D+QGDYDV P D G Y VRVGVF DD F CS+ F ++ + T MS R
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVN-----DRTDMSMR 253
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 291 bits (745), Expect = 1.220e-95 Identity = 148/260 (56.92%), Postives = 178/260 (68.46%), Query Frame = 2
Query: 92 MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFEEETSMSFRF 871
MAR A +A ++ AA LEV P G +AD YTVEW GT RFEIDLYYC SFCM+D CG+WVT LCPYG GCPDSAGDYD+ MPEPMSGTS+ GYK+ V + DE+ + CS+ FTL+ SE+ P E G L VTSP DGD A A YTVEWDY++GFGS+ RF +DLY G+GDCGT+ TLCD+ SIGC D+QGDYDV P D G Y +RVGVFDD+ + CSDTF V S ++ ++S RF
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTS----DDMTISMRF 254
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 278 bits (711), Expect = 1.210e-90 Identity = 130/208 (62.50%), Postives = 157/208 (75.48%), Query Frame = 2
Query: 89 IMARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTG-ESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDT 709
+MAR V LAC ++GAA L+V+ P++G +AD YTVEW GT ++RFEIDLYYCGS CMEDDCG+WVT LCPYGE GCPD+ GDYD+ MPEPMSGTS GYK+RV DI+DE DCS+ F L+ S E P+V + DGP L VTSP GD+A C EYTVE+DYD+G GS RF IDLY ADG GDCGT+ ++CDK +IGCKD+
Sbjct: 1 MMARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 262 bits (669), Expect = 3.920e-84 Identity = 134/260 (51.54%), Postives = 165/260 (63.46%), Query Frame = 2
Query: 92 MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGESRFEIDLYYCGSFCMEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFEEETSMSFRF 871
MAR A LA ++GA LEVT P G + VA S TVEW GT RF+IDLYYCGS CMED+CG+WVT LCPYG+ GCPD+ GDYDV MPEPM GTS+ GYK+ V D +DE+ + CS FTL+ S +D+D+GFGS+ RF+IDLY + GSGDCGT+ ++CDK SIGCKD+QGDYDV P D +G Y +RVGVF+D FGCSD+F ++G E+SMS RF
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGG-----ESSMSVRF 253
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 236 bits (601), Expect = 7.580e-71 Identity = 111/191 (58.12%), Postives = 138/191 (72.25%), Query Frame = 2
Query: 272 MEDDCGEWVTTLCPYGETGCPDSAGDYDVEMPEPMSGTSNLGYKIRVADINDEASVDCSELFTLLPSEEEPTVSEADGPFLVVTSPMDGDMAEACMEYTVEWDYDDGFGSAAGRFNIDLYEADGSGDCGTFYATLCDKDSIGCKDTQGDYDVAFPCDLNTGEYKVRVGVFDDDATFGCSDTFIVLGSTTFE 844
+ED+CGEWVT LCPYG GCPD+ GDYD+ MPEPMSGTS GYK+RVAD++ DCS+ F L+ S E P V D P+L+VTSP GD A+A EYTVE+DYD+G GS RF IDLY G+GDCGT+ LCDK++IGCKD+ GDYDV P + G Y +RVG F+DDA +GCS F ++GS++ E
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSGE 202 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1509.3527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1509.3527.1 >prot_F-serratus_M_contig1509.3527.1 ID=prot_F-serratus_M_contig1509.3527.1|Name=mRNA_F-serratus_M_contig1509.3527.1|organism=Fucus serratus male|type=polypeptide|length=263bp MARFALVTLACAVIGAAGDLEVTMPTEGSIYVADSLYTVEWQGTGESRFEback to top mRNA from alignment at F-serratus_M_contig1509:48156..51304- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1509.3527.1 ID=mRNA_F-serratus_M_contig1509.3527.1|Name=mRNA_F-serratus_M_contig1509.3527.1|organism=Fucus serratus male|type=mRNA|length=3149bp|location=Sequence derived from alignment at F-serratus_M_contig1509:48156..51304- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1509:48156..51304- >mRNA_F-serratus_M_contig1509.3527.1 ID=mRNA_F-serratus_M_contig1509.3527.1|Name=mRNA_F-serratus_M_contig1509.3527.1|organism=Fucus serratus male|type=CDS|length=1578bp|location=Sequence derived from alignment at F-serratus_M_contig1509:48156..51304- (Fucus serratus male)back to top |