mRNA_F-serratus_M_contig1508.3523.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1508.3523.1
Unique NamemRNA_F-serratus_M_contig1508.3523.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1508.3523.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-8
Identity = 35/112 (31.25%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:    7 MMEVDKLAADLHRLGDKSLTELRKCVIIVSGLSADFEMACRILENNPDGLNRAEIERIVGNQYNRLLRQQHDSKALSASRGTVTTNREKGKNRRFYNKFDGKCFNCGKKGHR 342
            MM+ DKL  ++  + D  L +    VI++  L  DF+   RILE+ P G++    +  +  ++ R+  ++    AL A+RG ++  + +        +F+GKCF CGK+GHR
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHR 113
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BLAST of mRNA_F-serratus_M_contig1508.3523.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.540e-7
Identity = 38/140 (27.14%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:    7 MMEVDKLAADLHRLGDKSLTELRKCVIIVSGLSADFEMACRILENNPDGLNRAEIERIVGNQYNRLLRQQHDSKALSASRGTVTTNREKGKNRRFYNKFDGKCFNCGKKGHRAHCRLCKSLEHRTRDYEERGAEKGAMLA 426
            MM+ DKL  ++  +GD  L +    VI++  L  +F+   RILEN   G++    +     ++ R+  ++     L  +RG ++  + +        +F+GKCF CGK+GHR +   C++   + R   + G +  A +A
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKY--ECRTRLQQVRPSSKPGDDSHAFMA 139
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BLAST of mRNA_F-serratus_M_contig1508.3523.1 vs. uniprot
Match: A0A5S6QG42_TRIMR (Uncharacterized protein n=5 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QG42_TRIMR)

HSP 1 Score: 56.6 bits (135), Expect = 9.170e-6
Identity = 64/222 (28.83%), Postives = 96/222 (43.24%), Query Frame = 1 
Query:    4 FMMEVDKLAADLHRLGDKSLTELRKCVIIVSGLSADFEMACRILENNP-DGLNRAEI-ERIVGNQYNRLLRQQHDSKALSASRGTVTTNREKGKNRRFYNKFDGKCFNCGKKGHRAHCRLCKS-LEHRTRDYEERGAEKGAMLAKLTVPVVPGVRAVAAMVVTACSVKKE----EWESDSGATFHMSHTRPGMFDNKKASPG-TNVEIADGNVLPVDGFGRI 645
            ++  ++ L  +L  +GD S+++    + I+ GLS D++     + N P      A + +R++   Y R       + AL+A   T    R   KN   + K D  C+ C KKGH A  R CKS ++H+ +     G  K  M                A +  +C          W  DSGAT HMS         K  SP  T V+IADG+VLP+   G +
Sbjct:  130 YLATMNHLVTELISVGD-SVSDGDVAMTILCGLSDDWDNVVSAICNLPATEFTCATVKQRLLAESYRRNDSSSQGTNALAAKATTFA--RPAIKN---FGKADAICYKCSKKGHYA--RECKSKVDHKRKQKNSPGDGKLQMSH--------------ASLYASCGAVSNGFAGAWVIDSGATHHMSPNEEYFTKWKAKSPANTQVQIADGSVLPIANAGTV 329
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1508.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F0W6E8_9STRA1.720e-831.25Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA3.540e-727.14Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A5S6QG42_TRIMR9.170e-628.83Uncharacterized protein n=5 Tax=Trichuris muris Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1508contigF-serratus_M_contig1508:197458..198228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue7.9e-08
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size651
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1508.3523.1prot_F-serratus_M_contig1508.3523.1Fucus serratus malepolypeptideF-serratus_M_contig1508 197464..198228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.086818-UTR-F-serratus_M_contig1508:197457..1974631622929494.086818-UTR-F-serratus_M_contig1508:197457..197463Fucus serratus maleUTRF-serratus_M_contig1508 197458..197463 +
1690962878.828794-UTR-F-serratus_M_contig1508:197457..1974631690962878.828794-UTR-F-serratus_M_contig1508:197457..197463Fucus serratus maleUTRF-serratus_M_contig1508 197458..197463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929494.1053777-CDS-F-serratus_M_contig1508:197463..1978021622929494.1053777-CDS-F-serratus_M_contig1508:197463..197802Fucus serratus maleCDSF-serratus_M_contig1508 197464..197802 +
1690962878.840952-CDS-F-serratus_M_contig1508:197463..1978021690962878.840952-CDS-F-serratus_M_contig1508:197463..197802Fucus serratus maleCDSF-serratus_M_contig1508 197464..197802 +
1622929494.1210697-CDS-F-serratus_M_contig1508:197922..1982281622929494.1210697-CDS-F-serratus_M_contig1508:197922..198228Fucus serratus maleCDSF-serratus_M_contig1508 197923..198228 +
1690962878.8514242-CDS-F-serratus_M_contig1508:197922..1982281690962878.8514242-CDS-F-serratus_M_contig1508:197922..198228Fucus serratus maleCDSF-serratus_M_contig1508 197923..198228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1508.3523.1

>prot_F-serratus_M_contig1508.3523.1 ID=prot_F-serratus_M_contig1508.3523.1|Name=mRNA_F-serratus_M_contig1508.3523.1|organism=Fucus serratus male|type=polypeptide|length=215bp
MMEVDKLAADLHRLGDKSLTELRKCVIIVSGLSADFEMACRILENNPDGL
NRAEIERIVGNQYNRLLRQQHDSKALSASRGTVTTNREKGKNRRFYNKFD
GKCFNCGKKGHRAHCRLCKSLEHRTRDYEERGAEKGAMLAKLTVPVVPGV
RAVAAMVVTACSVKKEEWESDSGATFHMSHTRPGMFDNKKASPGTNVEIA
DGNVLPVDGFGRIEV
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mRNA from alignment at F-serratus_M_contig1508:197458..198228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1508.3523.1 ID=mRNA_F-serratus_M_contig1508.3523.1|Name=mRNA_F-serratus_M_contig1508.3523.1|organism=Fucus serratus male|type=mRNA|length=771bp|location=Sequence derived from alignment at F-serratus_M_contig1508:197458..198228+ (Fucus serratus male)
AAGTTCATGATGGAAGTTGACAAGCTAGCAGCAGACCTTCACCGTTTGGG
TGACAAATCATTAACAGAATTAAGGAAGTGCGTGATCATCGTCTCTGGCT
TGTCTGCTGATTTTGAAATGGCATGTCGCATACTAGAAAATAACCCTGAT
GGTCTCAACAGGGCAGAAATAGAACGTATTGTAGGAAATCAGTACAACAG
ACTTCTCAGGCAGCAACATGACTCAAAGGCATTGTCAGCGTCGAGGGGCA
CCGTCACGACAAATAGAGAAAAAGGGAAGAACAGAAGATTCTACAACAAG
TTCGATGGAAAATGCTTCAATTGCGGGAAGAAAGGTCACCGCGCTGTAGA
CTGTAGGAGCACGAAGAAGAAGGGCGAAAAATCCGGAGCTTCCGACGAGA
GGAAGGAGGGCGGTGGTGGCGGTAGGTGCTACATCTGCAGAAGTGAGGAG
CACCTTGCGCACAAGCACTGTAGACTGTGCAAGAGCCTTGAGCACCGGAC
GCGAGACTATGAGGAGCGCGGAGCTGAAAAGGGCGCAATGCTGGCAAAAC
TGACTGTGCCGGTGGTTCCTGGGGTGAGAGCAGTGGCGGCAATGGTGGTA
ACCGCCTGTAGCGTTAAGAAGGAAGAATGGGAATCAGATTCCGGCGCCAC
ATTTCACATGTCGCACACCCGCCCCGGAATGTTTGATAATAAGAAGGCGT
CACCGGGGACGAACGTTGAGATCGCCGACGGCAATGTTCTACCGGTGGAC
GGCTTCGGGAGAATTGAGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1508:197458..198228+

>mRNA_F-serratus_M_contig1508.3523.1 ID=mRNA_F-serratus_M_contig1508.3523.1|Name=mRNA_F-serratus_M_contig1508.3523.1|organism=Fucus serratus male|type=CDS|length=1290bp|location=Sequence derived from alignment at F-serratus_M_contig1508:197458..198228+ (Fucus serratus male)
ATGATGGAAGTTGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTGACAA
ATCATTAACAGAATTAAGGAAGTGCGTGATCATCGTCTCTGGCTTGTCTG
CTGATTTTGAAATGGCATGTCGCATACTAGAAAATAACCCTGATGGTCTC
AACAGGGCAGAAATAGAACGTATTGTAGGAAATCAGTACAACAGACTTCT
CAGGCAGCAACATGACTCAAAGGCATTGTCAGCGTCGAGGGGCACCGTCA
CGACAAATAGAGAAAAAGGGAAGAACAGAAGATTCTACAACAAGTTCGAT
GGAAAATGCTTCAATTGCGGGAAGAAAGGTCACCGCGCTATGATGGAAGT
TGACAAGCTAGCAGCAGACCTTCACCGTTTGGGTGACAAATCATTAACAG
AATTAAGGAAGTGCGTGATCATCGTCTCTGGCTTGTCTGCTGATTTTGAA
ATGGCATGTCGCATACTAGAAAATAACCCTGATGGTCTCAACAGGGCAGA
AATAGAACGTATTGTAGGAAATCAGTACAACAGACTTCTCAGGCAGCAAC
ATGACTCAAAGGCATTGTCAGCGTCGAGGGGCACCGTCACGACAAATAGA
GAAAAAGGGAAGAACAGAAGATTCTACAACAAGTTCGATGGAAAATGCTT
CAATTGCGGGAAGAAAGGTCACCGCGCTCACTGTAGACTGTGCAAGAGCC
TTGAGCACCGGACGCGAGACTATGAGGAGCGCGGAGCTGAAAAGGGCGCA
ATGCTGGCAAAACTGACTGTGCCGGTGGTTCCTGGGGTGAGAGCAGTGGC
GGCAATGGTGGTAACCGCCTGTAGCGTTAAGAAGGAAGAATGGGAATCAG
ATTCCGGCGCCACATTTCACATGTCGCACACCCGCCCCGGAATGTTTGAT
AATAAGAAGGCGTCACCGGGGACGAACGTTGAGATCGCCGACGGCAATGT
TCTACCGGTGGACGGCTTCGGGAGAATTGAGGTGCACTGTAGACTGTGCA
AGAGCCTTGAGCACCGGACGCGAGACTATGAGGAGCGCGGAGCTGAAAAG
GGCGCAATGCTGGCAAAACTGACTGTGCCGGTGGTTCCTGGGGTGAGAGC
AGTGGCGGCAATGGTGGTAACCGCCTGTAGCGTTAAGAAGGAAGAATGGG
AATCAGATTCCGGCGCCACATTTCACATGTCGCACACCCGCCCCGGAATG
TTTGATAATAAGAAGGCGTCACCGGGGACGAACGTTGAGATCGCCGACGG
CAATGTTCTACCGGTGGACGGCTTCGGGAGAATTGAGGTG
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