mRNA_F-serratus_M_contig1479.3308.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.520e-28 Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 1
Query: 16 SNGLSGLENNGV-CCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPCNIGEP----SICSNGVFGVEAGGA-CCVTQCVTCGGVGCSRRAATAGLTADDCCIGRIMDSDVFCDVSGTAPCIIDGPCG 420
SNGL G+E NGV CC EC QCGG+GC GL + CC G I ++G CD++ APC IG CSNG+ G++ G CC +C CGG GC+ + AGL ++ CC G I S +CD + APCII G
Sbjct: 473 SNGLEGIEGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSRPTTVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCIIGSSSG 613
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 1.760e-15 Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 1
Query: 16 SNGLSGLENNG--VCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPCNIGEP-----SICSNGVFGVEAGGA--CCVTQC-VTCGGVGCSRRAATAGLTADDCCIGRIMDSDVFCDVSGTAPC 399
+ G+SG+E+ VCC EC CGG GC + A L+A+DCC I +GV+C ++G+APC + S+C NG GV+ CC +C +CGG GC G+ A CC I S + C APC
Sbjct: 26 AGGISGVESTSLDVCCTLECGTCGGVGC-TPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGT---IPGVDASQCCASIIEQSGIVCGDGIEAPC 159
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 3.060e-13 Identity = 53/171 (30.99%), Postives = 75/171 (43.86%), Query Frame = 1
Query: 16 SNGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLS---ASDCCR-GPIIS----AGVLCDESGMAPCNI--------------------------------GEPSICSNGVFGVEAGGACCVTQCVTCGGVGCSRRAATAGLTADDCCIGRIMDSDVFCDVSGTAPCIID 408
SNG G+++ CC+AEC CGGS C +G SD G + S A D++ AP + +CSNG+ GV++G ACC+ +CV CGG GC GL AD+CC G I ++ C ++ APC++D
Sbjct: 785 SNGFPGIQSGNACCLAECGACGGSDCDEFGGGLGADNCCESDIVEHGELCSIALEAPCYIDDAAPAPSPVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTDVCSNGIPGVQSGFACCLAECVACGGSGCDEFG--GGLGADNCCEGNIEENGELCSITLQAPCVVD 953
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 3.200e-12 Identity = 41/100 (41.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 145 PIISAGVLCDESGMAPCNIGEPSICSNGVFGVEAGGACCVTQCVTCGGVGCSRRAATAGLTADDCCIGRIMDSDVFCDVSGTAPCIIDGPCGPALTITLE 444
P++S GV + CSNG G+E GACCV+ C TCGG GCS R +GLT DDCC I+ C +G APC +DG P+ + E
Sbjct: 9 PMLSVGVAAAQK------------CSNGFPGIEKSGACCVSDCGTCGGSGCSSR--ESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDSTPSKSTPTE 94
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 6.350e-9 Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 19 NGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPC 195
NGL+G+ CC C CGGSGC S A+ GL+ DCC I S G+LC +SG APC
Sbjct: 27 NGLAGVSTGVYCCTLGCGTCGGSGCSSRAE--GLNGDDCCTSNIASNGILCADSGAAPC 83
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.340e-8 Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 19 NGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPC 195
NGL+G+ CC C CGGSGC S A+ GL+ DCC I S G+LC +SG APC
Sbjct: 27 NGLAGVSKGEYCCTLGCGTCGGSGCSSRAE--GLTGDDCCTSNIASNGILCADSGAAPC 83
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.690e-8 Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 19 NGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPC 195
NGL+G+ N CC C CGG GC + A+ GL +DCC I G+LC ESG APC
Sbjct: 12 NGLAGVSNGDYCCTLGCGTCGGPGCSTRAE--GLDGNDCCTANIAQNGILCAESGAAPC 68
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: D8LTS2_ECTSI (Similar to Gram-negative bacteria-binding protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS2_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.300e-7 Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 1 DSICISNGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPCNI 201
+S+C +NG+SG+E++GVCC C QCGGSGC G A+ CC I+ G +C G+APC I
Sbjct: 198 ESVC-TNGVSGIESDGVCCEISCGQCGGSGCSMR----GNGAASCCTSTILEVGEVC---GVAPCII 256
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 6.100e-7 Identity = 32/67 (47.76%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 16 SNGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPCNI-GEPS 213
SNG SG+++ CC+AEC +CGG GCG GL A CC I G LC + APC I GE S
Sbjct: 447 SNGFSGIQSGNACCLAECGECGGHGCGEFGG--GLGADKCCESDIEEYGELCSIALAAPCYIDGETS 511
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 3.000e-6 Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 1
Query: 16 SNGLSGLENNGVCCVAECPQCGGSGCGSEAQRVGLSASDCCRGPIISAGVLCDESGMAPCNIGE 207
SNG G+++ CC+AEC +CGG GCG GL A CC I G LC + APC I +
Sbjct: 120 SNGFPGIQSGVSCCLAECGECGGRGCGEFGG--GLGADKCCESDIEEYGELCSIALAAPCYIDD 181 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1479.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1479.3308.1 >prot_F-serratus_M_contig1479.3308.1 ID=prot_F-serratus_M_contig1479.3308.1|Name=mRNA_F-serratus_M_contig1479.3308.1|organism=Fucus serratus male|type=polypeptide|length=226bp MAPCNIGEPSICSNGVFGVEAGGACCVTQCVTCGGVGCSRRAATAGLTADback to top mRNA from alignment at F-serratus_M_contig1479:197655..199914- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1479.3308.1 ID=mRNA_F-serratus_M_contig1479.3308.1|Name=mRNA_F-serratus_M_contig1479.3308.1|organism=Fucus serratus male|type=mRNA|length=2260bp|location=Sequence derived from alignment at F-serratus_M_contig1479:197655..199914- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1479:197655..199914- >mRNA_F-serratus_M_contig1479.3308.1 ID=mRNA_F-serratus_M_contig1479.3308.1|Name=mRNA_F-serratus_M_contig1479.3308.1|organism=Fucus serratus male|type=CDS|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig1479:197655..199914- (Fucus serratus male)back to top |