mRNA_F-serratus_M_contig1477.3296.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1477.3296.1 vs. uniprot
Match: D8LDC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC8_ECTSI) HSP 1 Score: 719 bits (1855), Expect = 4.210e-240 Identity = 386/725 (53.24%), Postives = 500/725 (68.97%), Query Frame = 3
Query: 306 KAATPLGLLVVALAPLQTEGSIFDTPADELGEDDFAAYGNEVLVASMGLGIGPFALFGVLAFVAMLAMCCRCNRLHREDLAIAQAEGNNDGKGLDAMYEIEDYENRISKHRKILWILSFIIFLSYIFCAGYAYNGAKSSKATFDDIFDGTDVLLTEIQTALCAENGAKECADQSVGDFLLNIATEVVDQFEGIVIFLSSLTTVVLPLYWVSANLTTAATVINGTERAALNLNTSITNVNLIFTGDGNVADISGGSTLPTLDDSIIEDVAEGRRAIAAAKTLTGDSTVEVAEQLSGSSSSITRIKYQLDDVHGNEIEEDEDLRNTTLEAVYE-VLVPLRDTARDVYDFQNNELVDAREIVDAFLELSVQAVGAIIFLPGVVLLLTAICSGICQSSKPLYLNMCFVFLSQILFCLMAGVFLAVSKINGDVCDHHLQLIEINFQEEYNTTVKDTVIFFNFDKLYLILKCDGVSGDTPTSTNNFVGILGAEQACRVFNMSKMLKASSNMIKDNTDALASPKSTVVQAQGELSPLNDFVDMEIGDDEEIEESSDEIDDLLNEIPPTPFNWDSRADQDALDDFYLKNVTEFSWNNATTGDELYRSLLGEINKIISEMEPGVIEQSD-FDDIDYPYNFTLARNLTWMTVCAETSNFFPDPADPLTSNLLGIIIYSDEDQWGYLCGNVSAYANITVKLEDLIFENGETRLDLEEVSGHLDDIGGNLTAINGYQ 2474
+ A L L +A+ + T+GS+FDTPAD+L ++D+ YG EV VA+ GLGIG FG+LAF+ MLAMCCRC RLHR DLAIA+AEG+NDGKGLD MYEIEDYE+ ISKHRKILW+ SFIIFL Y+FCAGYAYNGA+++ ++F IFDGTDVLLT Q ALCAENG+ +CAD SVGDF+L I+ ++D+ EG+V F+SSL+ V PL VSANL TA V++ TE A +N+N SIT+VN I TGDG VA++ G T+ +D ++ D+ +GR A+ A LT S++E+AEQL+G+ S+ITRIKYQLDDVHGNEI DED+RN TL V + VL P+RD D+YD QN+++ + RE ++ +L+ +VQAV IIFLPGV+L LT++CSG+CQSSK INGD+CDHH+ LIE N E +NTTV+D I +F K+ IL C G +GDTPT +NNFV IL +Q +FN+S LK +S++I DN+ LA PK +V+ AQ EL PL+DFV+ + D ++ E SDEIDDLL ++PP+P +WD R QD++D FYL NV+ +SWNNA++G+ YR L +N +IS M PG+I D F DI PYNF ARNLT TVCA S F+P SN I IY+ +D W LC NV+AY T KLE LI EN E R DLE + + +I GN+T I Q
Sbjct: 13 RGAAMLCLPTLAMTLVVTKGSVFDTPADDLEQEDYIDYGQEVGVATAGLGIGLSIFFGLLAFLGMLAMCCRCKRLHRADLAIAEAEGDNDGKGLDDMYEIEDYEDNISKHRKILWLFSFIIFLGYLFCAGYAYNGAETTDSSFGSIFDGTDVLLTRAQEALCAENGSADCADGSVGDFMLEISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGVVDTTEMAVININNSITSVNAIITGDGPVAELMDGETIANIDGDVLHDIQDGRDALEQATELTESSSLEIAEQLTGNESAITRIKYQLDDVHGNEILGDEDIRNATLTTVLDDVLQPMRDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGVCQSSK----------------------------INGDLCDHHMALIEANLPE-FNTTVQDVEILVDFPKVEKILTCSGDAGDTPTDSNNFVDILEIQQ---IFNISSTLKEASSLITDNSALLAEPKDSVLDAQSELGPLDDFVETDFVGDIDMSELSDEIDDLLEDMPPSPLDWDDRDHQDSVDSFYLNNVSGYSWNNASSGNITYRGQLENVNWLISLMVPGIIGVEDAFLDIKDPYNFEQARNLTNETVCATDSPFYPADGQDRYSNSENIEIYAFDDHWDQLCRNVTAYYETTKKLETLIEENDEARQDLEGIQYEMGNIEGNITVITDQQ 705
BLAST of mRNA_F-serratus_M_contig1477.3296.1 vs. uniprot
Match: A0A835ZAU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU7_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.450e-38 Identity = 150/540 (27.78%), Postives = 239/540 (44.26%), Query Frame = 3
Query: 621 RISKHRKILWILSFIIFLSYIFCAGYAYNGAKSSKATFDDIFDGTDVLLTEIQTALCAENGAKECADQSVGDFLLNIATEVVDQFEGIVIFLSSLTTVVLPLYWVSANLTTA--------------ATVINGTERAALNLN------------TSITNVNLIFTGDGNVADISGGST-------LP--TLDDSIIEDVAEGRRAIAAAKTLTGDSTVEVAEQLSGSSSSITRIKYQLDDVHGNEIEEDEDLRNTTLEAVYEVLVPLRDTARDVYDFQNNELVDAREIVDAFLELSVQAVGAIIFLPGVVLLLTAICSGICQSSKPLYLNMCFVFLSQILFCLMAGVFLAVSKINGDVCDHHLQLIEINFQEEYNTTVKDTVIFFNFDKLYLILKCDGVSGDTPTSTNNFVGILGAEQACRVFNMSKMLKASSNMIKDNTDALASPKSTVVQAQGELSPLNDFVDMEIGDDEEIEESSDEIDDLLNEIPPTPFNWDSRADQDALDDFYLKNVTEFSWNNATTGDELYRSLLGEINKIISEM 2135
R ++ R+ LW + + ++Y+ C +Y+ A+ + T DD +DGT LT++Q ALC+ +CAD SVGD++L + T +V F V ++ L+ V P ++ AT + L++ T T + I T GN D +P T DD + VA I A T + + + +S + R+ YQLDDV NE+ DLR L A + + + + VY FQ A + V V AV I+ LPG+VLL TA C+G+C++ KP YL M F + +Q FCL+AG+ L + K+NGDVC H ++I N + V+ + L+C GV + PT+TNN V I G +A F+MS L +S + + S ++ +L L+ + ++ +D L ++PP PF+ D+ Q AL + F W T LY + L ++ +++ +
Sbjct: 169 RPARCRRYLWGATLALIIAYVACGAASYSAARKTLNTVDDAYDGTSAFLTDVQLALCSTGSDAKCADGSVGDYVLAVQTTMVGTFAAAVAWIDQLSGVQAPFDAMAMQTGVMSDTQVRARGGPHVRATPDAPQRKGPLSITPLLPPPHARAQATEATLIPDIGTYAGNWTDFFATYARYDFTFAVPNVTADDELR--VAADAVTIGATAAATQAANQTTYDIMVSPTSDLMRLSYQLDDVKNNELG-GPDLRGAALAATSALSTRIVNASARVYAFQTGPAETAYDTVSRHFSTGVLAVSGIVLLPGLVLLATAACAGLCRTPKPFYLGMAFGYWTQGAFCLVAGLALLLMKLNGDVCKQHKEIIVTNL--DVTVPVRGVTSTPLGVGIVGALECTGVYPEAPTATNNLVDIFGIGEA---FDMSGPLTDASGTVTGLAPTILSIITSTADITTQLDQLDPYAYTGARAQYVGATATAALDARLAQLPPEPFDRDN-VQQAALFETEYLQTANFRWATVTNTLPLYTTALNNLSAMLASV 699
BLAST of mRNA_F-serratus_M_contig1477.3296.1 vs. uniprot
Match: A0A836CLF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF9_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.390e-38 Identity = 110/407 (27.03%), Postives = 185/407 (45.45%), Query Frame = 3
Query: 402 DDFAAYGNEVLVASMGLGIGPFALFGVLAFVAMLAMCCRCNRLHREDLAIAQAEGNNDGKGLDAMYEIEDYENRISKHRKILWILSFIIFLSYIFCAGYAYNGAKSSKATFDDIFDGTDVLLTEIQTALCAENGAKECADQSVGDFLLNIATEVVDQFEGIVIFLSSLTTVVLPLYWVSANLTTAATVINGTERAALNLNTSITNVNLIFTGDGNVADISGGSTLPTLDDSIIEDVAEGRRAIAAAKTLTGDSTVEVAEQLSGSSSSITRIKYQLDDVHGNEIEEDEDLRNTTLEAVYEVLVPLRDTARDVYDFQNNELVDAREIVDAFLELSVQAVGAIIFLPGVVLLLTAICSGICQSSKPLYLNMCFVFLSQILFCLMAGVFLAVSKINGDVCDHHLQLIEINF 1622
+ + AYG V + G GI + G+L + + CCRC L R D I + +G +D + R++K RK+LW+ + ++ + Y CAG AY A S+ F + +DG D ++Q A+CA++GA+EC D+S+G FL + G FL + +T+ T+ + +G DI ++ + + A+ T + ++D HGNE++ DLR + L LR+ R +Y +Q VD + + +++ + A G I+FLPG+VL+L A C+ +C++ +PLYLNM FV+ Q +CL+ G+FL ++ +N D+CD H ++I F
Sbjct: 27 EQWKAYGATVSEHTAGFGIALMFVLGLLMSILAIVFCCRCRSLRRIDREIGEGKGFHDQAAI---------AYRVTKQRKLLWVGTVMLVVGYAACAGVAYEKALSTDVAFGNAYDGADKFALDLQKAVCAQDGARECEDKSLGAFLEAVYGATTAVLNGTAAFLGT----------AGITMTSNTTLYGMLTCTPXXXXXXXXXXXXRWQSEGRPRDIERYASXXXXXXXXXXXXXAMQGPLGASATF---------------------VASEIDAEHGNEVDGVPDLREGVTVVLDATLTQLRNFTRTIYKYQTGAAVDVDDAFNQWIKPAAAAAGGIVFLPGIVLVLLAFCTAMCKNPRPLYLNMAFVYKVQGFYCLLGGLFLTLAYVNSDLCDQHKEIIVEQF 393
BLAST of mRNA_F-serratus_M_contig1477.3296.1 vs. uniprot
Match: D8LDC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC9_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 4.620e-12 Identity = 44/88 (50.00%), Postives = 48/88 (54.55%), Query Frame = 3
Query: 2736 MFLSFCVQGCYGPSMRKRPRHTA-DPDGSKVKPTATAAGETRELNKVAGNKTGLSIVVNEEMALNTTADESKLPTPHSPTPLVGDSGF 2996
MFLSFC+QGCYGPSMRKRPR A D DG K + LN TAD + LPTPHSPTPLVG+SGF
Sbjct: 1 MFLSFCIQGCYGPSMRKRPRGPAGDFDGGKAR-------------------------------LNDTADNN-LPTPHSPTPLVGNSGF 56
BLAST of mRNA_F-serratus_M_contig1477.3296.1 vs. uniprot
Match: A0A835ZCZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ2_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 5.010e-10 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 3
Query: 2565 LATDIESLNDHFMAASSYTMCGYIGTFYEDVYLDAMCTDLQGNVEAVAGPALCVVILMFLSFCVQGCYGPSMRKRP 2792
LA I ++N FM A +Y+MCG+IG FY+ VYL A+C QGN+ +A P L V LM ++F + P+MR RP
Sbjct: 71 LAASIVAVNGVFMKADAYSMCGFIGDFYQSVYLGAVCEGFQGNLRDIAVPILFVACLMLVAFVLYAWLAPAMRARP 146 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1477.3296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1477.3296.1 >prot_F-serratus_M_contig1477.3296.1 ID=prot_F-serratus_M_contig1477.3296.1|Name=mRNA_F-serratus_M_contig1477.3296.1|organism=Fucus serratus male|type=polypeptide|length=907bp MLRRRGMDCKAATPLGLLVVALAPLQTEGSIFDTPADELGEDDFAAYGNEback to top mRNA from alignment at F-serratus_M_contig1477:144337..171514- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1477.3296.1 ID=mRNA_F-serratus_M_contig1477.3296.1|Name=mRNA_F-serratus_M_contig1477.3296.1|organism=Fucus serratus male|type=mRNA|length=27178bp|location=Sequence derived from alignment at F-serratus_M_contig1477:144337..171514- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1477:144337..171514- >mRNA_F-serratus_M_contig1477.3296.1 ID=mRNA_F-serratus_M_contig1477.3296.1|Name=mRNA_F-serratus_M_contig1477.3296.1|organism=Fucus serratus male|type=CDS|length=5442bp|location=Sequence derived from alignment at F-serratus_M_contig1477:144337..171514- (Fucus serratus male)back to top |