mRNA_F-serratus_M_contig1470.3277.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1470.3277.1
Unique NamemRNA_F-serratus_M_contig1470.3277.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: A0A836CN33_9STRA (Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN33_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.100e-27
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALR---QGTVLAPCVVFFGCRDNSEFLCSGDMEKWCKIGVITALHVAFSR-GAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            FR P D+S +PV+M+G GTGISPM+GFLQARE A +    G+ + PC V+FGCR   +FL    M KW   G+IT L VAFSR     K YVQ+LIA+ R+ +W ++++  C
Sbjct: 1464 FRLPQDMSGAPVIMVGPGTGISPMLGFLQAREVAAKGAANGSSIGPCTVYFGCRGPPDFLHQEQMRKWESTGIITDLQVAFSRIDPNKKVYVQNLIAEQREKLWTLLQNPKC 1575          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: D8LQZ9_ECTSI (Nitric oxide synthase, oxygenase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.500e-26
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   25 TSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRDNSEFLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            T P  ++G+G+GISP++GFL+AR +A RQG VLAPC+ +FGCRD+SE L +  ++ W + G +T LHVA SR       VQ LI++ +  VWE++R+ +C
Sbjct:   74 TMPGELVGSGSGISPLMGFLEARAKASRQGKVLAPCLFYFGCRDSSEILYANRLQTWLEDGELTELHVAKSREGPNVMNVQDLISRQQASVWELLRNPTC 173          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: A0A836CN69_9STRA (Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN69_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.030e-24
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALR---QGTVLAPCVVFFGCRDNSEFLCSGDMEKWCKIGVITALH----------------VAFSR-GAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            FR P D+S +PV+M+G GTGISPM+GFLQARE A +    G+ + PC V+FGCR   +FL    M KW   G+IT L                 VAFSR     K YVQ+LIA+ R+ +W +++D  C
Sbjct: 1374 FRLPQDMSGAPVIMVGPGTGISPMLGFLQAREVAAKGAANGSSIGPCTVYFGCRGPPDFLHQEQMRKWESTGIITDLQNAHHCCFRCSLDACEQVAFSRIDPNKKVYVQNLIAEQREKLWTLLQDPKC 1501          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: A0A533J4X8_9BRAD (NADPH--cytochrome reductase (Fragment) n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533J4X8_9BRAD)

HSP 1 Score: 100 bits (248), Expect = 6.610e-24
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRDNSE-FLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNS 321
            FR PDD S  P++MIG GTG++P  GFLQ R     +G  L P ++FFGCR+ ++ FL + +++ +   GV + LH AFSRG GPKTYVQ+L+A+ +  VW ++   +
Sbjct:   63 FRLPDDASV-PIIMIGPGTGLAPFRGFLQERAARKARGATLGPAMLFFGCRNPAQDFLYADELKGFAADGV-SELHTAFSRGDGPKTYVQNLLAQQKDKVWSLIEKGA 168          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: UPI0020266AEB (LOW QUALITY PROTEIN: NADPH--cytochrome P450 reductase n=2 Tax=Gekkota TaxID=8560 RepID=UPI0020266AEB)

HSP 1 Score: 104 bits (259), Expect = 8.450e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCR-DNSEFLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            FR P   ST+PV+MIG GTGI+P +GF+Q R    +QG  +   V+++GCR +N ++L   ++ K+ K G +T LHVAFSR    K YVQHL+ K+++ VW+++ + +C
Sbjct:  495 FRLPFK-STTPVIMIGPGTGIAPFVGFIQERGWLKQQGKEVGETVLYYGCRHENEDYLYKDELAKFLKEGALTGLHVAFSRDQEHKIYVQHLLKKNKENVWKLIHEGNC 602          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: UPI001BAD33AF (cytochrome P450 n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAD33AF)

HSP 1 Score: 104 bits (259), Expect = 8.890e-24
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRD-NSEFLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIV 309
            FR PDD +  P++MIG GTG++P  GFLQ R     QG  L P ++FFGCR  + +FL   +++++   GV   LHVAFSRG GPKTYVQHLIA+ +  VW ++
Sbjct:  919 FRLPDDAAV-PIIMIGPGTGLAPFRGFLQERAARKAQGQELGPAMLFFGCRHPDQDFLYGKELQQFATDGV-AELHVAFSRGEGPKTYVQHLIAQQQDKVWNLI 1020          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: A0A812GYX6_9DINO (CypB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GYX6_9DINO)

HSP 1 Score: 104 bits (259), Expect = 8.970e-24
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRDNSE-FLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            F  P+D S +P++M+G GTG++PM+GFLQ RE  L++GT +    +FFGCR   E +L   ++E   K G ++ LHVAFSR +G K YVQ  I++ R+ +W++++D  C
Sbjct: 1158 FHLPEDRS-APIIMVGPGTGLAPMMGFLQQREALLKKGTKVGHATLFFGCRARDEDYLYQEELEGHLKSGALSQLHVAFSRESGQKVYVQDKISEQREALWKLLQDPKC 1265          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: A0A812JPJ3_9DINO (CypB protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JPJ3_9DINO)

HSP 1 Score: 103 bits (258), Expect = 1.240e-23
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRDNSE-FLCSGDME-KWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            F  P+D  T+P++M+G GTG++PM+GFLQ RE  L++GT +    +FFGCR   E +L   D+E ++ K G ++ LHVAFSR +G K YVQ  I + R  VW +++D  C
Sbjct: 1271 FHLPED-RTAPIIMVGPGTGLAPMMGFLQQREALLKKGTKVGHATLFFGCRARDEDYLYQEDLEGRYLKSGALSTLHVAFSRESGQKVYVQDKIWEERDAVWRLLQDPKC 1379          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: K9QGA7_9NOSO (Ferredoxin--NADP reductase n=5 Tax=Nostocales TaxID=1161 RepID=K9QGA7_9NOSO)

HSP 1 Score: 103 bits (256), Expect = 2.290e-23
Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRDNSEFLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNSC 324
            FR P D   + ++M+G GTG+SP+IGFLQ R+   +QG  LA   +FFGCR++ +FL    ++ W   GV++ L+VAFSR  G K YVQHL+ +  + +W+++    C
Sbjct: 1274 FRPPSD-PEAMMLMVGPGTGVSPLIGFLQYRQALWQQGQPLADAALFFGCRNHQDFLYQEQLQTWYNQGVLSELNVAFSRQGGEKVYVQHLMQRKPQEIWQLLSHPKC 1380          
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Match: A0A7S4QI30_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QI30_9DINO)

HSP 1 Score: 102 bits (255), Expect = 3.100e-23
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGCRDNSE-FLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVWEIVRDNS 321
            F  PDD   +PV+M+G GTG++PM+GFLQ RE  LR G  L P ++FFGCR   E +L   ++++  K G ++ LHVA SR    K YVQ LI +HR  VW++++  S
Sbjct: 1018 FHMPDD-PAAPVIMVGPGTGVAPMMGFLQEREHLLRSGQALGPAMLFFGCRRRDEDYLYEEELDQALKSGALSDLHVACSREGPQKVYVQDLIWEHRAAVWKLLQQPS 1124          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1470.3277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CN33_9STRA1.100e-2750.00Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema mi... [more]
D8LQZ9_ECTSI1.500e-2648.00Nitric oxide synthase, oxygenase domain protein n=... [more]
A0A836CN69_9STRA1.030e-2444.53Nitric-oxide synthase (NADPH) n=1 Tax=Tribonema mi... [more]
A0A533J4X8_9BRAD6.610e-2445.37NADPH--cytochrome reductase (Fragment) n=1 Tax=Bra... [more]
UPI0020266AEB8.450e-2444.04LOW QUALITY PROTEIN: NADPH--cytochrome P450 reduct... [more]
UPI001BAD33AF8.890e-2450.00cytochrome P450 n=1 Tax=unclassified Bradyrhizobiu... [more]
A0A812GYX6_9DINO8.970e-2444.04CypB protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812JPJ3_9DINO1.240e-2345.45CypB protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
K9QGA7_9NOSO2.290e-2342.59Ferredoxin--NADP reductase n=5 Tax=Nostocales TaxI... [more]
A0A7S4QI30_9DINO3.100e-2346.30Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1470contigF-serratus_M_contig1470:124755..125818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D8LQZ9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NADPH-hemoprotein reductase activity
EggNOG OGsCOG0369@1,KOG1158@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size325
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1470.3277.1prot_F-serratus_M_contig1470.3277.1Fucus serratus malepolypeptideF-serratus_M_contig1470 124756..125818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.9829826-CDS-F-serratus_M_contig1470:124755..1248241622929448.9829826-CDS-F-serratus_M_contig1470:124755..124824Fucus serratus maleCDSF-serratus_M_contig1470 124756..124824 -
1690962857.8723881-CDS-F-serratus_M_contig1470:124755..1248241690962857.8723881-CDS-F-serratus_M_contig1470:124755..124824Fucus serratus maleCDSF-serratus_M_contig1470 124756..124824 -
1622929449.0053685-CDS-F-serratus_M_contig1470:125030..1251201622929449.0053685-CDS-F-serratus_M_contig1470:125030..125120Fucus serratus maleCDSF-serratus_M_contig1470 125031..125120 -
1690962857.8821752-CDS-F-serratus_M_contig1470:125030..1251201690962857.8821752-CDS-F-serratus_M_contig1470:125030..125120Fucus serratus maleCDSF-serratus_M_contig1470 125031..125120 -
1622929449.0243883-CDS-F-serratus_M_contig1470:125432..1255551622929449.0243883-CDS-F-serratus_M_contig1470:125432..125555Fucus serratus maleCDSF-serratus_M_contig1470 125433..125555 -
1690962857.8903365-CDS-F-serratus_M_contig1470:125432..1255551690962857.8903365-CDS-F-serratus_M_contig1470:125432..125555Fucus serratus maleCDSF-serratus_M_contig1470 125433..125555 -
1622929449.0374792-CDS-F-serratus_M_contig1470:125776..1258181622929449.0374792-CDS-F-serratus_M_contig1470:125776..125818Fucus serratus maleCDSF-serratus_M_contig1470 125777..125818 -
1690962857.8988883-CDS-F-serratus_M_contig1470:125776..1258181690962857.8988883-CDS-F-serratus_M_contig1470:125776..125818Fucus serratus maleCDSF-serratus_M_contig1470 125777..125818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1470.3277.1

>prot_F-serratus_M_contig1470.3277.1 ID=prot_F-serratus_M_contig1470.3277.1|Name=mRNA_F-serratus_M_contig1470.3277.1|organism=Fucus serratus male|type=polypeptide|length=108bp
FRAPDDLSTSPVMMIGAGTGISPMIGFLQAREEALRQGTVLAPCVVFFGC
RDNSEFLCSGDMEKWCKIGVITALHVAFSRGAGPKTYVQHLIAKHRKGVW
EIVRDNSC
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mRNA from alignment at F-serratus_M_contig1470:124755..125818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1470.3277.1 ID=mRNA_F-serratus_M_contig1470.3277.1|Name=mRNA_F-serratus_M_contig1470.3277.1|organism=Fucus serratus male|type=mRNA|length=1064bp|location=Sequence derived from alignment at F-serratus_M_contig1470:124755..125818- (Fucus serratus male)
TTCCGAGCGCCCGACGACCTTTCGACTTCACCGGTTATGATGGTAAGCCT AGCCTTTGCCATTTCTTGTATTTCTATAATTATCTCTATGTGGCTATACA GGGCCGTAACATGAATGTCGCATATATACACAAACGAGGGCTACAACTAG GCTACGACGGCATTTAATTGGAACTACGTGTGGTTTTGCAGCACCGTTTA AAACGCTTTGAACGAACTAAAGCCGGGCCATTGTATCGTTTGGAACGATT GCCGGTGAAGTAGATAGGTGCGGGGACCGGCATCAGCCCTATGATTGGTT TCCTGCAGGCGAGGGAAGAGGCACTTCGCCAAGGCACAGTGCTTGCGCCG TGCGTTGTCTTCTTCGGTTGTCGTGACAACTCAGAGGTAAGTAGACCATC GGACTTAAGATATATAGTATTTTAAAGACTAACGACATCCTTCAATATTC TTCCCGCGCCACTGTCTCCTTGCTACCCGTCGACGGACTTGTGAGAGTAA GTTGTGCGTGCTTGGAGGCTTGTTTACGAAAATTGGTTGGTCTGTGTCTT GAGTTTAGAACTATTGAGAAAAAAGGCAGGTGTGAGCTGTATCTTCCGAA AATGATTGTTGATGTGTTCAAGGTACCCATGCTCTCCAGCCAGGATCACC GTCATGTTTGCCACCATGATCGATGCTTCCTACCCTCTATCTCGACAGTT CCTTTGCTCCGGGGACATGGAAAAGTGGTGCAAGATTGGTGTAATCACTG CGCTACATGTTGCGTTCTCAAGGGGAGCAGGACCAAAAGTGAGCAAACAT ACGTCAATATGATATTGAAACTGCAAGCATCTTGAGAAAGGAACACTGTA TTGCTACGGGGTTTCGTGTCCGGCGCGGCATGGCGAGAGTGTTTTTCAAA CCAAACCTCCGCTTGTTCACACATATACACTTTTCCTGAACCAATGCACG CAATAAGGCTGACTCATAACTTGTTATGCTTGCGCGACTACCAGACGTAT GTCCAACACCTCATTGCTAAGCATCGGAAGGGTGTTTGGGAGATCGTGCG CGACAACAGCTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1470:124755..125818-

>mRNA_F-serratus_M_contig1470.3277.1 ID=mRNA_F-serratus_M_contig1470.3277.1|Name=mRNA_F-serratus_M_contig1470.3277.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1470:124755..125818- (Fucus serratus male)
TTCCGAGCGCCCGACGACCTTTCGACTTCACCGGTTATGATGTTCCGAGC
GCCCGACGACCTTTCGACTTCACCGGTTATGATGATAGGTGCGGGGACCG
GCATCAGCCCTATGATTGGTTTCCTGCAGGCGAGGGAAGAGGCACTTCGC
CAAGGCACAGTGCTTGCGCCGTGCGTTGTCTTCTTCGGTTGTCGTGACAA
CTCAGAGATAGGTGCGGGGACCGGCATCAGCCCTATGATTGGTTTCCTGC
AGGCGAGGGAAGAGGCACTTCGCCAAGGCACAGTGCTTGCGCCGTGCGTT
GTCTTCTTCGGTTGTCGTGACAACTCAGAGTTCCTTTGCTCCGGGGACAT
GGAAAAGTGGTGCAAGATTGGTGTAATCACTGCGCTACATGTTGCGTTCT
CAAGGGGAGCAGGACCAAAATTCCTTTGCTCCGGGGACATGGAAAAGTGG
TGCAAGATTGGTGTAATCACTGCGCTACATGTTGCGTTCTCAAGGGGAGC
AGGACCAAAAACGTATGTCCAACACCTCATTGCTAAGCATCGGAAGGGTG
TTTGGGAGATCGTGCGCGACAACAGCTGCACGTATGTCCAACACCTCATT
GCTAAGCATCGGAAGGGTGTTTGGGAGATCGTGCGCGACAACAGCTGC
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