mRNA_F-serratus_M_contig1435.3110.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1435.3110.1
Unique NamemRNA_F-serratus_M_contig1435.3110.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1435.3110.1 vs. uniprot
Match: A0A6H5L4Q1_9PHAE (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.330e-28
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 1 
Query:  274 MEDVFCMMDPFSGGVQGEGGDGALRRCLPTVLGGTCANCSRSVCARCSLFYAVRLCGQCAREHKTSLPKEVWRMVDAT 507
            MEDV+CM DPFS G  G G  G  R+CLPTV+GGTCA CS+ VCA+CSLFYAVRLCG CAR HK SLP E+ R+VDAT
Sbjct:    1 MEDVYCMRDPFSVGGAGGGATGENRKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARAHKASLPSELHRIVDAT 78
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BLAST of mRNA_F-serratus_M_contig1435.3110.1 vs. uniprot
Match: A0A7S3D3U6_9EUKA (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D3U6_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 6.590e-14
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:  193 FTCSLCRETFRVDYHGRKPPFCPELVFMEDVFCMMDPF-SGGVQGEGGDGALRRCLPTVLGGTCANCSRSVCAR--CSLFYAVRLCGQCAREHKTSLPKEV 486
            FTCS+C + +  +Y G+KPPF  ++V++EDV+ + DPF S   +GE             +GG C+ C   VCA   CSLFY  R C  CAR+     PKE+
Sbjct:    6 FTCSICMQDYPFEYFGKKPPFQNDVVYVEDVYVLRDPFHSLHSKGE---------RVVCMGGRCSLCLSPVCASSSCSLFYTKRFCSTCARKEVEEFPKEL 97
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BLAST of mRNA_F-serratus_M_contig1435.3110.1 vs. uniprot
Match: UPI001069289D (cysteine-rich DPF motif domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069289D)

HSP 1 Score: 72.0 bits (175), Expect = 7.150e-12
Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:  187 MSFTCSLCRETFRVDYHGRKPPFCPELVFMEDVFCMMDPFSGGVQGEGGDGALRRCLPTVLGGTCANCSRSVCA--RCSLFYAVRLCGQCAREHKTSLPKEVWRMV 498
            M F C  C  +   DY G++PPFC E++ +E V+ + DPF+            R     +LGG CA C   VC   +CS+FY+ R C  C+ ++    P E+ + V
Sbjct:    8 MVFQCKNCNFSTHYDYFGKQPPFCKEIILLESVYVIKDPFT------------RETGIVILGGHCALCHTEVCCDQKCSVFYSKRFCIPCSMKYFKEFPAEIQKDV 101
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4Q1_9PHAE2.330e-2870.51Cysteine-rich DPF motif domain-containing protein ... [more]
A0A7S3D3U6_9EUKA6.590e-1440.59Cysteine-rich DPF motif domain-containing protein ... [more]
UPI001069289D7.150e-1233.96cysteine-rich DPF motif domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1435contigF-serratus_M_contig1435:6255..11837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog192875.XP_004343823.1
Preferred nameCDPF1
KEGG koko:K22073
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cysteine-rich domain
EggNOG OGsKOG4543@1,KOG4543@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_006030.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons3
Model size1293
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1435.3110.1prot_F-serratus_M_contig1435.3110.1Fucus serratus malepolypeptideF-serratus_M_contig1435 6441..11144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.8981557-UTR-F-serratus_M_contig1435:6254..64401622929420.8981557-UTR-F-serratus_M_contig1435:6254..6440Fucus serratus maleUTRF-serratus_M_contig1435 6255..6440 +
1690962844.0936582-UTR-F-serratus_M_contig1435:6254..64401690962844.0936582-UTR-F-serratus_M_contig1435:6254..6440Fucus serratus maleUTRF-serratus_M_contig1435 6255..6440 +
1622929420.9387462-UTR-F-serratus_M_contig1435:11144..115311622929420.9387462-UTR-F-serratus_M_contig1435:11144..11531Fucus serratus maleUTRF-serratus_M_contig1435 11145..11531 +
1690962844.133381-UTR-F-serratus_M_contig1435:11144..115311690962844.133381-UTR-F-serratus_M_contig1435:11144..11531Fucus serratus maleUTRF-serratus_M_contig1435 11145..11531 +
1622929420.9536178-UTR-F-serratus_M_contig1435:11543..118371622929420.9536178-UTR-F-serratus_M_contig1435:11543..11837Fucus serratus maleUTRF-serratus_M_contig1435 11544..11837 +
1690962844.1457906-UTR-F-serratus_M_contig1435:11543..118371690962844.1457906-UTR-F-serratus_M_contig1435:11543..11837Fucus serratus maleUTRF-serratus_M_contig1435 11544..11837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.9118402-CDS-F-serratus_M_contig1435:6440..65991622929420.9118402-CDS-F-serratus_M_contig1435:6440..6599Fucus serratus maleCDSF-serratus_M_contig1435 6441..6599 +
1690962844.1040196-CDS-F-serratus_M_contig1435:6440..65991690962844.1040196-CDS-F-serratus_M_contig1435:6440..6599Fucus serratus maleCDSF-serratus_M_contig1435 6441..6599 +
1622929420.9242673-CDS-F-serratus_M_contig1435:10877..111441622929420.9242673-CDS-F-serratus_M_contig1435:10877..11144Fucus serratus maleCDSF-serratus_M_contig1435 10878..11144 +
1690962844.1138122-CDS-F-serratus_M_contig1435:10877..111441690962844.1138122-CDS-F-serratus_M_contig1435:10877..11144Fucus serratus maleCDSF-serratus_M_contig1435 10878..11144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1435.3110.1

>prot_F-serratus_M_contig1435.3110.1 ID=prot_F-serratus_M_contig1435.3110.1|Name=mRNA_F-serratus_M_contig1435.3110.1|organism=Fucus serratus male|type=polypeptide|length=142bp
MSFTCSLCRETFRVDYHGRKPPFCPELVFMEDVFCMMDPFSGGVQGEGGD
GALRRCLPTVLGGTCANCSRSVCARCSLFYAVRLCGQCAREHKTSLPKEV
WRMVDATEQRWSETKPLVITSGSGVSSPAGVIDNPTQPIMK*
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mRNA from alignment at F-serratus_M_contig1435:6255..11837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1435.3110.1 ID=mRNA_F-serratus_M_contig1435.3110.1|Name=mRNA_F-serratus_M_contig1435.3110.1|organism=Fucus serratus male|type=mRNA|length=5583bp|location=Sequence derived from alignment at F-serratus_M_contig1435:6255..11837+ (Fucus serratus male)
CGCAAACAAAAAAATGCGCCCTCGCTACTGTCTGTACTTTCCATCTTTCA
AGACCGCCTAGTCAACCCCGAAAATTTGGTGCGCTCTCCGGGATTCTGTA
ACGGTAGTCACGAGCATCGATCGACTTGAGGAAGGCATCAAAGAATCACC
AGTCTCTACTCTCTACCGGTCAAATACAGTACTCACATGTCTTTTACGTG
CTCTCTGTGCCGGGAGACGTTCCGCGTGGATTACCACGGCAGAAAACCAC
CTTTCTGTCCTGAGCTGGTTTTCATGGAGGACGTGTTCTGCATGATGGAC
CCATTTTCGGGAGGGGTGCAAGGAGAAGGAGGCGATGGTGCACTGGTGAG
TTGACTTCGATTACAGAATTGGCAATATTCCCGCCTCGGGTTGCGATCAG
TCGTTGCCGCCCGAGCATCTTGACTTCAATTGCATACCAGTACATAGCTA
CGAACAACAGAGTACAAGACAGCAGTACCGTACCTACCTTTTTTCGAACA
AGATAGTTGATGTACTGGTATGATGTATGATGTACCACTGTACCAGGTAC
AGGCTACACACCATCGCCGTGTACAGTGGATTCAGCCTGGCTGTGGAGAA
TGAGCGGGCTGACGCGGGACGGGACGGCCGAACATATCTCGCGAGACCAA
ATTCTAGGGCACGAACGGGCACACGGGAAAGACCACATTCCCTGTTCAGC
TGATCACGAGCAGGATTGGCAACCATACCTGTTGATGCCAAATCTATAAA
ATATGTGATGGCCACACCACGAGTACTGTTGTAGTTACATACCTAGTAAT
ACTGCACGTGTGATACTGTACACCAAGTGTACCAGGTCCTACATGTGTTG
ATACTGTACTGAAAGGACCGTACAAGTCTCATCAGCGCCACTGAAAGTTT
TTCCTCTCGTCTACCAGGTACGGCGCAGTGCCATATCACAGACGTATACA
GTACGTGAAAGTGTACTTGTGCCGTGTGTACCGTGGTTCTATTCCGACTT
GTAGCATTTTACCCGTTGTAAAACAGAAAATGTTAAAACACAACTTGAAC
TCTTTCATACTATTAATAGGTCTAAATGTCCAACGGGTGGAGAACGATTA
ATTCGTTAGTACACAAAATTCGGCTTCACGGTCGACGAGGGAAAGGAACG
GCTGAATCCTTCTCGCGAATAAAATTAAGGCACGCACCGCAGAAGGGAGG
TGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTAC
GTCCATTGATGTCCAGAATGGATGGGAAGAAAACAACAGAAAACAACAAC
ATACCAGAGGCCAGGTGAATTTCTGGGAAACTTGGCTACCGTGGGCTATC
ATAGTAGTATTAATTGCGAGCGTTTAGCGAGCTTCTAATCTGTGTGCTGT
ATCAATTTGAGCTCGGGTGTATCAAAATACGGGGCACTTTGACCAATCAT
GAATGTGCCGTATGTTCCTTTTCGTGATGTGCGCCCCCTGTTTGGTTAAA
CCAACACCTGTGTTCAGGGCAGGAACGTGGAACTTCGAATTACTTGCCCT
GTTTGATTAAAAACCAACACCTGTGTACTGCTGACGATAGTTACCAAACA
ATCCTTTAGCGAGCCTATAGCGATAGCTACCCTATCTTACTATTAATACC
AGGTAGTAAATAGTGAACCCCTCATTGATACCATAGCAAAATCGGAACGC
ATCCCTACCTTACATACATCGCCGGTCGGGAGAAATCCCGTGAGTAAGCG
CAAGATTCACCCTGAGAATGGAGAATGAGGAGGCTGACACGGGACGGGAC
TGCCGAACCCGTCTCGAGAGACCAAATTCTCAGGCGCGAACGCGTACAGG
AGAAACGGGCAGGATTGGCAACCTACTCGGTTAATCCATTCTCTTGCTGC
TATCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCG
AAACCGTCTCGCGAGACCAAATTCCCAGGCGCGAACGCGGACAGGGGAAT
ATTATTTTCTCTGTTTAGCTGACCACGAGCAGGATTGGCAACCTTACCAG
GTTGATCCATACTCTTGCTATATGTGTGACCATACATATGTGTGACCATG
CATACTTGAGAAAAAAAAATGATCCTGTATCTGTGAGACCATACATCCAT
CATGAAATCATCTTCTATGGTCATTTTTCCCCCCTGACTGGGGGATGCTC
AGAAGGTCTAGGCACGTTCTGTTTTTTCTTCCAAAACTCTGAACGCATCT
AAACCTTCTGGGTATCCACGCCACGCCCAGGGGGAAAATTGTCAAACGAT
TTACGTGGGAACATTGGCTGTAAGGACAAAAGCGCTACCTTGAAAGGGTT
TCCCAACGTACAGTGGTTACATAGGGTCAACAGCAGTATAATATGGGGGA
GAAGCCCACAGTTATACTGTACACGTACAATAATCACCATGTATGGACAC
CTAAACAAAACCAAACATGTATGTCCAATATATTTGGACTAAGAGTCCCA
GACTACAGTAGTAATATGGTCATGGAGAAGGACAAAGTTAAGAATTTAAA
TGATCTTATTATACTAATAATGTTCATGGTTGTTTTATTGAGCAGGGAGC
CCAAATGTGGCTTATATTCCCGGCCGGAGTGGTATTTTTCATTTCGGTAA
AGGGAATGTACAACTCATACTGTAGATGTGAAAGGCCTCAAAGTTACAAC
AGGCCCTTAAAAACTGATAAAACATCGGGTAAAAGTAGTCACATAGGGTC
AAGTGGAGACTATCGGGGGAAGCCCACCGTTATACAGTACTGTACTCAAA
CATTATTAATCGCCATGCAGAGAAGAGACACCAACGCAAGAACAAGAAAA
TAAAAGGGTCATATTATACTAACTCAAAACAAAGCCAAGGGACACTAATA
ATAGGAGTCTAGACTAGGTGTACAAAATATTTGGACTAAAAGCTTCGGGC
TAAAGCAATATGGCCATAGAATGAAGTCAAGGAACTAAACTAATGTTAGT
TTAGATAAGATTCATTGTTGCTCTAAAATTCATAGAGATATAAAAGACCT
CAAAATTACACCAGGCCCATAGAGACTTAAGTTATACCAGGTACCTGGTA
TACATTGATGAAAACAGACTTGGGGTGTAGCGTATAGTATTCAGGAGGGC
ATCCACTTTGAGGGAAATAATCACGTAGGGTCAAAGGGAAAGTATCAGGG
GAAGCCACCCGTTATACTGTACTACAGCATTAATCATCATGCAGGGTCAT
CAAAATAAGCGGGACGCCCGAACCTGTCTTGCGAGACCAAACTCTCGGGC
ACGAATAAGGACAGGGAAAAAATATTTTTGCAGGATTTACAGACAACCTT
ACGTACCGGGTTGATCCATGCGGTGCTAGCCTCCGATATTTTCAACATCC
CCACTTCATACCATTAATTGTATATAATAGTATATAATAGTATATAATAC
CTGGTATATAATACCTAGTATATAATACCTGGTATATAATACCTGGTATA
TAATAGTATAGTAGGTGTGGGAAAAGAGAGGCTCACATTAGTTGGTCCTT
GTCCTTGGTGACCTGCAAGGGCATCATCTGTTCGTTACTGGAACCACCTT
GAGGATTATTGTTAATGTCCTGTGCCGGCGTACTCTTGGCAGTGAACGCC
ATCCGTACGCAACTGCGTGACCCGATAAACACGGGACTGGCCCGATGACG
TATGGCGGTATCAATGAATGGGCGCTGCTGCGGAAATCTGGAGGATTCCC
TTGAGTAAGCACCAGCTTCAGCCTGAGTGTGGAGAATGAACAGGCTGGCG
CAGGATGGGACGGCCGAACCCGTCTCGCGAAACCAAATTCTCAGGCGCGA
ACGGGGATAGAGAAATATTAATTTTCCCTGTTCAGCTGACCTCGAGCAGG
GATGGCAACCTTACCCGGTTGATCCCCACTCTGCTCTATGCGATGACCAT
ACACAGGTGATGACTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGA
TCCATACTCTGCTATGCATACGTGATGACTATACATACAAATGGGACTCT
CTTCTCTCTCTCCCAGCCTTACGAAGCCTTACGAAGCGACTCACGGTCCA
CACCTGTTCGCCGTTTGGCTGGGAAAGTAACGTTATTTTGCCTGCAATAG
ATAACGCCTCCCCGATAGATCCCCCCCCCCTGCCTTTTCTTATCACAAAC
AAGATATAAGCATGACTGTATCTACTGAACTGTGAAACCCATTTCTCAAA
ACCGAGGGGTGAGGGAAGAAAAAGTACCTTTTTGTCCAGACACCTTTTTT
CTTGTAGAAAAAGGACGATTACAAGCGCGAGGGCGACGTTTTATCGGTGT
TCGAAAGGAGTTGGCCGGCCGCAGCTGGTGGCAACGAACATCCTCGAACA
CCGATCCTTTGACTGTTTAACGCCCAGTTTCCTTCGGGAGTAGTTCGAGA
TCTACAACTAATAGTAGTGAAGGGAAGCTATTTTAAAGTCTTCCTCGCGA
AGTCTTCGTCGCAAAGGGCCAGGATTTTTATCCTTTGACAGCTTCTATAA
TATTTACTAGAATGATATAGCCTAGACCATGCTGCCTACCCGTCCCCCCC
GAAACCACGTGCGCCCCCAGCAGAGAAGATGCCTTCCGACAGTTCTTGGG
GGGACTTGCGCCAACTGCAGCCGATCAGTCTGCGCGCGATGCAGCCTGTT
CTACGCGGTGAGACTGTGCGGGCAGTGCGCGCGCGAGCACAAAACGAGCT
TGCCCAAGGAGGTGTGGCGTATGGTGGACGCGACAGAGCAACGCTGGAGC
GAGACGAAGCCCCTAGTAATAACATCGGGAAGCGGGGTCTCCTCTCCCGC
CGGTGTCATCGACAACCCAACCCAACCCATCATGAAATAAAACTAATGTA
CTAAAGTCGCCCCAGTGGAGTACAGTCGTATTAATGTATTACTAGTGGGT
GACCCCGCAGTTTCATGATTATTATTATTATAGCTCTAGTACTGTAGTTT
TAATAGTGCGGATTATGGGAGTTCGATTCTTGACAGGATTATTTATTTTA
TTCTGGTTTCCTTAGTAATAGGTAATATATAGTCTAATAGCATAAAAACG
CGAGTAAGTATCATCCAACCTTCGGTTGACGAGATGGTGTACTTCTGAGA
GTGTTGAACTTGCACCTTGATAAAAGTTGATGGAAAAAAAAAGTCGTCGG
CGAGAACCGGGGGGAGAGATGGGAAGATAGATAGATCCTTCGTGACCACA
GTCATAAGGACAACGTTGCAATGAATAGTATGTATGTATGTATGTATGTA
TGTTTGGTCATCACTGATAGCAAGAGTCAACCAGGTAAGGTTGCCAATCT
TGCTCATGATCAGCTGAACAGAGAAGAAAAGAAATGTCTCTCTGTCCGCG
TTCGCGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCTC
GCGTCAGCCTGCTCATCTCCGTACTCAGGCTGAATCTGGTCCTTATTTAC
GGGATCCCTCCCGAGTTCCGCGGCGGCGTCCATTTATTTATATTAAACCG
CCATACGCCATCGGGTACGTCCCGAGTTTATCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1435:6255..11837+

>mRNA_F-serratus_M_contig1435.3110.1 ID=mRNA_F-serratus_M_contig1435.3110.1|Name=mRNA_F-serratus_M_contig1435.3110.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig1435:6255..11837+ (Fucus serratus male)
ATGTCTTTTACGTGCTCTCTGTGCCGGGAGACGTTCCGCGTGGATTACCA
CGGCAGAAAACCACCTTTCTGTCCTGAGCTGGTTTTCATGGAGGACGTGT
TCTGCATGATGGACCCATTTTCGGGAGGGGTGCAAGGAGAAGGAGGCGAT
GGTGCACTGATGTCTTTTACGTGCTCTCTGTGCCGGGAGACGTTCCGCGT
GGATTACCACGGCAGAAAACCACCTTTCTGTCCTGAGCTGGTTTTCATGG
AGGACGTGTTCTGCATGATGGACCCATTTTCGGGAGGGGTGCAAGGAGAA
GGAGGCGATGGTGCACTGAGAAGATGCCTTCCGACAGTTCTTGGGGGGAC
TTGCGCCAACTGCAGCCGATCAGTCTGCGCGCGATGCAGCCTGTTCTACG
CGGTGAGACTGTGCGGGCAGTGCGCGCGCGAGCACAAAACGAGCTTGCCC
AAGGAGGTGTGGCGTATGGTGGACGCGACAGAGCAACGCTGGAGCGAGAC
GAAGCCCCTAGTAATAACATCGGGAAGCGGGGTCTCCTCTCCCGCCGGTG
TCATCGACAACCCAACCCAACCCATCATGAAATAAAGAAGATGCCTTCCG
ACAGTTCTTGGGGGGACTTGCGCCAACTGCAGCCGATCAGTCTGCGCGCG
ATGCAGCCTGTTCTACGCGGTGAGACTGTGCGGGCAGTGCGCGCGCGAGC
ACAAAACGAGCTTGCCCAAGGAGGTGTGGCGTATGGTGGACGCGACAGAG
CAACGCTGGAGCGAGACGAAGCCCCTAGTAATAACATCGGGAAGCGGGGT
CTCCTCTCCCGCCGGTGTCATCGACAACCCAACCCAACCCATCATGAAAT
AA
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