mRNA_F-serratus_M_contig1433.3105.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1433.3105.1
Unique NamemRNA_F-serratus_M_contig1433.3105.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1433.3105.1 vs. uniprot
Match: D8LIE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.920e-23
Identity = 73/201 (36.32%), Postives = 105/201 (52.24%), Query Frame = 2 
Query:   53 EVQSLHVS-LYVLWEDEIASKPVSSRRSFIGMFFV---DKDIPL---NETVVSARLPYERVNIIGT---KPFTLLSNDVTVSLSQYVRIDANGQPNASPEHTFSQVTTSGSHTLSLNSFKDKTHDGALLFVTFNVNKFSYQSIEEVDPVDLATLLGSAGGMWEIICAVFAVLFVASQGTRPDKKWVFRKTADERARNSAID 625
            E   L VS L VLW DE+A  PVSS R FI  F V   D+D  L   N     ARLPY+R+++  T   +  T++SNDV                          VTT+G  +L  ++       GA+LF TF++N+FS+Q++EE+D  D  +++G+AGGM  I+ A+F +LF  S+   P + W F +    R R S +D
Sbjct:  100 EGMQLFVSALSVLWSDEVAETPVSSTRQFINTFLVGEGDEDDDLDSENAVATLARLPYDRISVDATNASESITVVSNDV--------------------------VTTTGQQSLQFDNADP--FSGAILFATFSINEFSFQTVEELDTSDYVSMVGAAGGMLVIVYALFGLLFAPSRSPGPRRIWRFSQR--RRRRRSKLD 270
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BLAST of mRNA_F-serratus_M_contig1433.3105.1 vs. uniprot
Match: A0A6H5JAB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.580e-15
Identity = 43/122 (35.25%), Postives = 75/122 (61.48%), Query Frame = 2 
Query:  260 TVSLSQYVRIDANGQPNASPEHTFSQVTTSGSHTLSLNSFKDKTHDGALLFVTFNVNKFSYQSIEEVDPVDLATLLGSAGGMWEIICAVFAVLFVASQGTRPDKKWVFRKTADERARNSAID 625
            T+ L+++V +  +    ++ E  ++QVTT+G  +L L++       GA+LF TF++N+FS+Q++EE DP    +++G+AGGM  I+ A+F +LF  S+   P + W F +    R R S +D
Sbjct:   31 TLELAEHVLLQPDEVTGSTTERGYTQVTTTGQQSLQLDNADP--FSGAILFATFSINEFSFQTVEEYDPSHYPSMVGAAGGMLAIVYALFGLLFAPSRSPGPRRIWRFSRR--RRKRRSKLD 148
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1433.3105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIE9_ECTSI5.920e-2336.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAB6_9PHAE3.580e-1535.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1433contigF-serratus_M_contig1433:184547..189689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog2880.D7FP33
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size882
Cds size606
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.5741172-UTR-F-serratus_M_contig1433:184546..1846281622929419.5741172-UTR-F-serratus_M_contig1433:184546..184628Fucus serratus maleUTRF-serratus_M_contig1433 184547..184628 +
1690962843.3343306-UTR-F-serratus_M_contig1433:184546..1846281690962843.3343306-UTR-F-serratus_M_contig1433:184546..184628Fucus serratus maleUTRF-serratus_M_contig1433 184547..184628 +
1622929419.590781-UTR-F-serratus_M_contig1433:184955..1850151622929419.590781-UTR-F-serratus_M_contig1433:184955..185015Fucus serratus maleUTRF-serratus_M_contig1433 184956..185015 +
1690962843.3488271-UTR-F-serratus_M_contig1433:184955..1850151690962843.3488271-UTR-F-serratus_M_contig1433:184955..185015Fucus serratus maleUTRF-serratus_M_contig1433 184956..185015 +
1622929419.6755757-UTR-F-serratus_M_contig1433:189555..1896891622929419.6755757-UTR-F-serratus_M_contig1433:189555..189689Fucus serratus maleUTRF-serratus_M_contig1433 189556..189689 +
1690962843.4167027-UTR-F-serratus_M_contig1433:189555..1896891690962843.4167027-UTR-F-serratus_M_contig1433:189555..189689Fucus serratus maleUTRF-serratus_M_contig1433 189556..189689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.6062624-CDS-F-serratus_M_contig1433:185015..1851321622929419.6062624-CDS-F-serratus_M_contig1433:185015..185132Fucus serratus maleCDSF-serratus_M_contig1433 185016..185132 +
1690962843.3600044-CDS-F-serratus_M_contig1433:185015..1851321690962843.3600044-CDS-F-serratus_M_contig1433:185015..185132Fucus serratus maleCDSF-serratus_M_contig1433 185016..185132 +
1622929419.62286-CDS-F-serratus_M_contig1433:187998..1880761622929419.62286-CDS-F-serratus_M_contig1433:187998..188076Fucus serratus maleCDSF-serratus_M_contig1433 187999..188076 +
1690962843.3746567-CDS-F-serratus_M_contig1433:187998..1880761690962843.3746567-CDS-F-serratus_M_contig1433:187998..188076Fucus serratus maleCDSF-serratus_M_contig1433 187999..188076 +
1622929419.6459737-CDS-F-serratus_M_contig1433:188704..1888761622929419.6459737-CDS-F-serratus_M_contig1433:188704..188876Fucus serratus maleCDSF-serratus_M_contig1433 188705..188876 +
1690962843.3942945-CDS-F-serratus_M_contig1433:188704..1888761690962843.3942945-CDS-F-serratus_M_contig1433:188704..188876Fucus serratus maleCDSF-serratus_M_contig1433 188705..188876 +
1622929419.6576056-CDS-F-serratus_M_contig1433:189316..1895551622929419.6576056-CDS-F-serratus_M_contig1433:189316..189555Fucus serratus maleCDSF-serratus_M_contig1433 189317..189555 +
1690962843.4040492-CDS-F-serratus_M_contig1433:189316..1895551690962843.4040492-CDS-F-serratus_M_contig1433:189316..189555Fucus serratus maleCDSF-serratus_M_contig1433 189317..189555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1433.3105.1prot_F-serratus_M_contig1433.3105.1Fucus serratus malepolypeptideF-serratus_M_contig1433 185016..189555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1433.3105.1

>prot_F-serratus_M_contig1433.3105.1 ID=prot_F-serratus_M_contig1433.3105.1|Name=mRNA_F-serratus_M_contig1433.3105.1|organism=Fucus serratus male|type=polypeptide|length=202bp
MFFVDKDIPLNETVVSARLPYERVNIIGTKPFTLLSNDVTVSLSQYVRID
ANGQPNASPEHTFSQVTTSGSHTLSLNSFKDKTHDGALLFVTFNVNKFSY
QSIEEVDPVDLATLLGSAGGMWEIICAVFAVLFVASQGTRPDKKWVFRKT
ADERARNSAIDHNQTGICSGCYCFHRVKARNLPRRRAPVTNFTDDDGATF
S*
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mRNA from alignment at F-serratus_M_contig1433:184547..189689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1433.3105.1 ID=mRNA_F-serratus_M_contig1433.3105.1|Name=mRNA_F-serratus_M_contig1433.3105.1|organism=Fucus serratus male|type=mRNA|length=5143bp|location=Sequence derived from alignment at F-serratus_M_contig1433:184547..189689+ (Fucus serratus male)
CCGTGTTAATTTGTCAAACTTTACAATTGACTCCACGGGTATCGAGGCCG
GGGAAGTGCAGTCGCTTCATGTCTCCCTCTACGTGAGTTGATTATATATG
GGTAGAAATATTTGTGGAAGCTACAAATGTATCACAGGTAACGGCTTCAT
TGTCAATTATTAATAGTACTGTAGGATGTTTTAAAACGGCAGGGTAACTT
CATATAAAGATTCATAATGCACAAGGAAAGCAGGACGATGGCCACCGTCG
TGAAATTGTATTACTTACAGTATCGAGCGGGGGCTAGCCCTTAAAGTTTG
GTGCACTTTCCTATCTTTATCTCGCGTATTCTACAGTACTACTTGTACAT
ATAGAGAGCAATGCCATTTTCAAGTGGCATGTCGCTTTTCACGTAACATG
GCCTGACAGGTACTCTGGGAAGATGAGATCGCCTCAAAGCCAGTGTCAAG
CCGCCGAAGCTTCATAGGCATGTTCTTCGTAGACAAGGATATCCCTCTCA
ATGAAACCGTCGTCTCGGCGAGACTGCCTTACGAGCGTGTGAATATCATA
GGCACGAAGCCCTTCACCTTACTATCCAACGACGTGGTGAGAGAAAACGC
GTGCACTGCTTGTCCAAGTCCGATCCTTTGTTCACAGGAACCGCATGAAA
TGTTCTCGTAGGCCAAAAATCAGTGCTGTCCTAAGGGTTGGTTAGAGTGA
ATCGGATTCCAATGCCGAATCAATACCCTCTACACGCCGATACTTTCGAT
ATGCCCTCTTCATACCAATAGGGGATGTGTGAAAGAGGCGCATATTAATT
GGTCCATGGCGGCCTGCCAAGGCAGCACCCGTTTGAAACTACCTTGAGGA
CTACTGGCCCCGTGCCGGCGGACTCTCGGCAAGGAACGTCATCGGTACGC
AATTGTGTGAGCCGATAAACTTGGGACTGACCCGATGGCGTATGGCAGTT
TAACGGGGCCCCACGCGTTTTTTCAAAAAACAAAATCCAAGTGCAAGAGT
ATCGTCCGTACTATAATGGAGTGAATACGGGCGTGTTTTGCCTCAAAGTA
CAATTTTGGTTTCAGCAATATGAGGTATGAGCAACCAGCTGTCTTTCCGC
CACATGTTCCAAAGTAAGAGTGCATAGTCATGTGTCTTTGTTCAGTAGGA
AGTTTTGGGCTTCGAAGGTCATGTACCGAGGTTCGGCGGCCGACTTTTTG
GTGGTTTTGTGTAAACCCGGGAATAATCTAACCGCAAATGCCACAGAAGG
TGACTACACACATGTAGACAACTTTCTTCGGCTAAGTGGCATGTAGAAGG
TTGTCCTCTTCGGAGGGTGCTCCAGCAAGGTTTTAGGAGGTCTTCTGCGC
AAAACCGCGGTCTCGGGGGCGATGTCAGGCTCAAGAGCGGAGAGCCTACT
GCTGTTCCTACTGCTGCTGCTGCTGCAGCTGTAGTAGGAGTACAGAAAAA
CCCCACCGAAAAGTCGGCCGCCAAACCTCGGTACATGACCTTCAAAGCCC
AAAACTTCCTACTGAACAAAGATACATGACTATGCACTTTTATGTTTGGA
ACATGTGGCAGAGAGGCAGCTGATTGCGCATACCTCATATTGCTGATACC
AAAATTGTACTTTAAAGCAAAACACGCCCGTATTCACTCCATTATAGTAC
CGACGATACTCTTGCACTTGGATTTATTTATTTATTTTTTAAACGCGTGG
GGCCCCGTTAAATAAATAAATGGACACCGCCGCGGGAATCGGGAGGAACC
CCATAAGTAAGCACCATGTTCAACTTGAGTCTGGAGATGAGCAGGCTGAC
GCGAGACGGGACAGCCGAGCCCGTCTTGCGAAACCAAATTTTCAGGCGCA
AACGCGGACAGGGAAATCTATTTTTTCCCTGTTCAGCTGACCACGAGTCA
GATTGGCAATCTTACCCGTTTGATCCATACTCTTGCTATATGTGTGACCG
TACCCTATACCTACTGTCGCCCTGACACGCTATACTCGATATATCTATCT
GACTTCAGTGCACTTTTACGAAGGCGGAGCTCTCTGAGGAATGTCCTACT
CGGCCAGATTTATGTCTCTCTCCAAACAAAGCGATTTGTCATTTCTTTGC
AGGGTCAGCATGTACGGTAATTATACATAGCAGAGTATGGTTCAGACGGG
TAATGTTGCCAATGCGACTTGTGGTCAGCTGAACAGGGAAAATTTGATAT
ATTTCTGTCCGCGTTCGCGCCTGAGAATTTGGTCTCGCGAGACGGGTTCG
GCAGTCCCGTCCCGCGTCAGACTGCTCAtTCTCCATACTCAAGCTTATTC
TGGTGCTTACTTACGGGATTCCTCCCGATTCCCGCGGCGGCGTCCATTTA
TTTATTTAACGGGGCCCCACGCTTTTTTTTCAAAAAAATATATTCCAAGG
GCAAGAGTATCGTCGGGTACTGTAATGGAGTGAATACGGGCGTGTTTTGC
CTCAAAGTACAATTTGGTATCAGCAATATGAGGTATGAGCAACCAGCTGT
CCCTACCGCCACATGTTCCAAACGTAAGAGTGCATAGTCATGTGTCTTTG
TTCAGTAAGAGTTTTGGGCTTCGAAGGTCATGTACCAAGGTTCGGCGGCC
GACGTTTTTTTGGTGGTTTTGTGTAAACCCGGGAATAATCCAACCGCAAA
TGCCACAGAAGGTTACTACACACATGAAGACAACTTTCTTCGGCTAAGTG
GCACGTGGAAGGTTGTCCTCTTCGGAGGGTGCTCCAGCAGGGTCTTAGGA
GGTCTCTTGCGCAAAACCGCAGTCTCGGGGGCGATGTTAGGCTCAAGAGC
GGAGAACCTACTGATGTCCCTACTGCTGCTGCTGCTGCAGCTGTAGTAGG
AATACAGAAAAAAAACACCGAAAAGTCGGCCGCCGAACCTCGCGTACATG
ACCTTCGAAGCCCAAAACTTTTTACTGAACAAAGACACATGACTATGCAC
TCTTACGTTTGGAACATGGGGCGGTAGGGATAGCTGGTTGCTCATACTTC
ATATTGCTGATACCAAAATTGTACTTTGAGGCAAAACACGCCCGTATTCA
CTCCATTATAGTACCGAAGATACTCTTGCACTTGGAATATATTTTTTTGa
AAAAAACGCGTGGGGCCCCGTTAAACCGCCATATACGCCATCGGGTCAGT
ACCAAATTTATCGGGCCACACAATTGTATCGATGACATACATTGCTGAGA
GTCCACCGGCACGGGGCCAGTAGTCCTCAAGGTAGTTCCAAACGGGTGCT
GCATTGGAAGCCATGGACCAATTGATATGCGCCCCTCTTTCCCACACCCA
CTATTGGTATGAAGAGGGCATGTTGAAAGTACCGGCGTACACATCCTTCT
TCGACTACTACGCTCCTCTTGCCCTCACGGGATCACTCCTGTCGACACTC
GCCTAAAGATCAAGTAACTTTGTTGCTATATATTTTGCTGACATCCGCCC
AGACGGTAAGCTTGTCGCAGTACGTGCGGATAGATGCGAATGGCCAGCCT
AATGCATCACCGGAGCACACCTTCTCCCAGGTATACACGCACGTAGTATA
TCGACGCAGTCCAGCCTCTATCGCAATTCGAGCAGTTTTCCTCGGGAGTT
TTTCATGTTAAAAATGTTAAATTCTGGTATTTATTTTCCGCCGTCCCTTC
ATGCTGACGAATTCGTTATCGCGCAGAATCGGCCTAACAATACACGCCGC
CACCGACTGTTTGCGTTTGGGGATAAGCAACAACCAATTTGTATTAGAGG
CAAAAGTATTGAACCTCGTCACCAGACATCGTAGCACACAAGGGTTACCG
TAGATCGTTACATGGTCCACGTTATTGGTTGATGAAAGGGCAGATGCACC
GAAGACAGGAGGCATTATTTGATGCTCGTTGCAAGATAGAACCATGAGAT
GGGTGAGCTCAACGTGGTTGGGATTTGCGTGACACCTGATTATTTTTCCT
TCGATGGAAAACCTGGTGTCGACAAAGAGAAAGCACTATTTTTGCTATAA
ATAGTAACGGTAATTCACTTGCTGCATAATTAAAATACGCCACCATTGAC
TCCATCGGGAACAAGCAACCTCACAAAACGATGCGGTCAACGGCGGTGCG
GCGGCGGGTAATGAGTGGATGAAGTTCGACTGTACTGCTTGACGATCGAT
GGCAGCAGGTCACGACCAGCGGATCTCACACCCTTTCCCTGAACAGTTTC
AAGGATAAAACCCACGACGGGGCTCTTCTATTCGTCACGTTCAACGTGAA
CAAGTTTTCGTACCAATCCATTGAAGAGGTGGACCCCGTTGACCTGGCAA
CTCTGCTAGGATCCGCTGGCGGCATGTGGGGTGAGATTCAAAATGAAACA
CCAGTACACTAGTATCGGAACTGCAATGCACTGTGCAGCATTTCACAATA
TTTAGAGTCAATGTACCCTCTCCACTTTCGCAGCATGTTGCGCACTTTTC
AAATGCAAAATCCACTGGGGACGCAACATCTACTTTTATCTTATGAGGGC
ATAAAAAAACGATTCGGTTCGTTTTTTCTAAAATGTTTCCCCGAAGGCAT
GTCAATACACTTCCCCATCTACCCGAGCTCCTGCGACAAATTGTTAGTGT
AACATATCGCGTTATCCGGGGTGGAAGGTCTGTGCAGATATTAAGGCGCG
CATCGAGACGACGGTTTCGAAAAACATGCAGCTTCTCCTCTGAGCTTTAG
TATTTCGCTCCTTAACCGCCCACGCAATATGTATTTCCCTTTTTTTTTCT
CGCTCTCTCTCGCATTCCAGAAATTATCTGTGCCGTCTTTGCGGTCCTCT
TTGTCGCCAGTCAGGGCACTAGACCGGACAAGAAGTGGGTTTTCAGGAAA
ACCGCAGACGAAAGGGCGCGGAACTCCGCCATCGATCATAACCAAACAGG
GATATGTTCAGGGTGCTACTGTTTCCACAGAGTGAAGGCAAGGAATTTGC
CTCGACGAAGAGCACCCGTCACCAACTTTACGGATGATGACGGGGCAACT
TTTAGTTGAGGCGTTAAAGTCTCATTCGGCACCTTGTCGGGTATGGATTC
AGAGCTCTGCAGTGTTTATTTTTGGGCGGAGGGGAGGGAAGATGTATTCC
TTCGTTTTTCTTAGCGAGGGGCGATCGATCGCTGATACTTTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1433:184547..189689+

>mRNA_F-serratus_M_contig1433.3105.1 ID=mRNA_F-serratus_M_contig1433.3105.1|Name=mRNA_F-serratus_M_contig1433.3105.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig1433:184547..189689+ (Fucus serratus male)
ATGTTCTTCGTAGACAAGGATATCCCTCTCAATGAAACCGTCGTCTCGGC
GAGACTGCCTTACGAGCGTGTGAATATCATAGGCACGAAGCCCTTCACCT
TACTATCCAACGACGTGATGTTCTTCGTAGACAAGGATATCCCTCTCAAT
GAAACCGTCGTCTCGGCGAGACTGCCTTACGAGCGTGTGAATATCATAGG
CACGAAGCCCTTCACCTTACTATCCAACGACGTGACGGTAAGCTTGTCGC
AGTACGTGCGGATAGATGCGAATGGCCAGCCTAATGCATCACCGGAGCAC
ACCTTCTCCCAGACGGTAAGCTTGTCGCAGTACGTGCGGATAGATGCGAA
TGGCCAGCCTAATGCATCACCGGAGCACACCTTCTCCCAGGTCACGACCA
GCGGATCTCACACCCTTTCCCTGAACAGTTTCAAGGATAAAACCCACGAC
GGGGCTCTTCTATTCGTCACGTTCAACGTGAACAAGTTTTCGTACCAATC
CATTGAAGAGGTGGACCCCGTTGACCTGGCAACTCTGCTAGGATCCGCTG
GCGGCATGTGGGGTCACGACCAGCGGATCTCACACCCTTTCCCTGAACAG
TTTCAAGGATAAAACCCACGACGGGGCTCTTCTATTCGTCACGTTCAACG
TGAACAAGTTTTCGTACCAATCCATTGAAGAGGTGGACCCCGTTGACCTG
GCAACTCTGCTAGGATCCGCTGGCGGCATGTGGGAAATTATCTGTGCCGT
CTTTGCGGTCCTCTTTGTCGCCAGTCAGGGCACTAGACCGGACAAGAAGT
GGGTTTTCAGGAAAACCGCAGACGAAAGGGCGCGGAACTCCGCCATCGAT
CATAACCAAACAGGGATATGTTCAGGGTGCTACTGTTTCCACAGAGTGAA
GGCAAGGAATTTGCCTCGACGAAGAGCACCCGTCACCAACTTTACGGATG
ATGACGGGGCAACTTTTAGTTGAAAATTATCTGTGCCGTCTTTGCGGTCC
TCTTTGTCGCCAGTCAGGGCACTAGACCGGACAAGAAGTGGGTTTTCAGG
AAAACCGCAGACGAAAGGGCGCGGAACTCCGCCATCGATCATAACCAAAC
AGGGATATGTTCAGGGTGCTACTGTTTCCACAGAGTGAAGGCAAGGAATT
TGCCTCGACGAAGAGCACCCGTCACCAACTTTACGGATGATGACGGGGCA
ACTTTTAGTTGA
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