mRNA_F-serratus_M_contig143.3076.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3076.1
Unique NamemRNA_F-serratus_M_contig143.3076.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig143.3076.1 vs. uniprot
Match: D8LTN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.820e-24
Identity = 99/150 (66.00%), Postives = 115/150 (76.67%), Query Frame = 1 
Query:    1 EQGQREKGNPSPGVIGGAAFVGAGVGALFGGPXXXXXXGATAAGLCLSDNKAGDVARSTGRAGLAVINKGKELNDRYGFGEKVKDAAHTTYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGEAIGKTMESVADALSEED 450
            E+GQ     P  GV+GGAA VGA  G L  GP      GA AA  CL  ++AGDVARSTG+AGLAV+ KGKE+N +YG  +KVK AAH+T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RAGEA G  M+SV +A+S++D
Sbjct:    7 EEGQPNADAPPAGVVGGAALVGATTGLLLSGPLVAIGLGAGAAACCLRRDQAGDVARSTGQAGLAVVEKGKEINTQYGVADKVKGAAHSTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRAGEAFGGAMDSVTNAVSKKD 156
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTN9_ECTSI3.820e-2466.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:533941..539827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue4.1e-19
Seed eggNOG ortholog2880.D8LTN9
Hectar predicted targeting categorysignal anchor
EggNOG OGs2E68G@1,2SCZE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size450
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3076.1prot_F-serratus_M_contig143.3076.1Fucus serratus malepolypeptideF-serratus_M_contig143 533941..539827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.5201242-CDS-F-serratus_M_contig143:533940..5340301622929415.5201242-CDS-F-serratus_M_contig143:533940..534030Fucus serratus maleCDSF-serratus_M_contig143 533941..534030 -
1690962841.4487476-CDS-F-serratus_M_contig143:533940..5340301690962841.4487476-CDS-F-serratus_M_contig143:533940..534030Fucus serratus maleCDSF-serratus_M_contig143 533941..534030 -
1622929415.5419588-CDS-F-serratus_M_contig143:534461..5345751622929415.5419588-CDS-F-serratus_M_contig143:534461..534575Fucus serratus maleCDSF-serratus_M_contig143 534462..534575 -
1690962841.4603813-CDS-F-serratus_M_contig143:534461..5345751690962841.4603813-CDS-F-serratus_M_contig143:534461..534575Fucus serratus maleCDSF-serratus_M_contig143 534462..534575 -
1622929415.5637228-CDS-F-serratus_M_contig143:535297..5353901622929415.5637228-CDS-F-serratus_M_contig143:535297..535390Fucus serratus maleCDSF-serratus_M_contig143 535298..535390 -
1690962841.469488-CDS-F-serratus_M_contig143:535297..5353901690962841.469488-CDS-F-serratus_M_contig143:535297..535390Fucus serratus maleCDSF-serratus_M_contig143 535298..535390 -
1622929415.5881753-CDS-F-serratus_M_contig143:539674..5398271622929415.5881753-CDS-F-serratus_M_contig143:539674..539827Fucus serratus maleCDSF-serratus_M_contig143 539675..539827 -
1690962841.4900723-CDS-F-serratus_M_contig143:539674..5398271690962841.4900723-CDS-F-serratus_M_contig143:539674..539827Fucus serratus maleCDSF-serratus_M_contig143 539675..539827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3076.1

>prot_F-serratus_M_contig143.3076.1 ID=prot_F-serratus_M_contig143.3076.1|Name=mRNA_F-serratus_M_contig143.3076.1|organism=Fucus serratus male|type=polypeptide|length=150bp
EQGQREKGNPSPGVIGGAAFVGAGVGALFGGPFIAIGLGATAAGLCLSDN
KAGDVARSTGRAGLAVINKGKELNDRYGFGEKVKDAAHTTYEKAKEVDAE
HGVVDKAKAGASRAWQRAREVDREHRLSERAGEAIGKTMESVADALSEED
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mRNA from alignment at F-serratus_M_contig143:533941..539827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3076.1 ID=mRNA_F-serratus_M_contig143.3076.1|Name=mRNA_F-serratus_M_contig143.3076.1|organism=Fucus serratus male|type=mRNA|length=5887bp|location=Sequence derived from alignment at F-serratus_M_contig143:533941..539827- (Fucus serratus male)
GAACAAGGACAGAGGGAAAAGGGTAATCCATCACCCGGAGTTATCGGGGG
TGCGGCATTTGTCGGTGCTGGTGTAGGCGCCTTATTTGGTGGGCCTTTCA
TCGCGATAGGTCTGGGGGCGACTGCGGCAGGACTGTGCCTCAGCGACAAT
AAGGTGAGAGAAGCAATAAGATTCGTCCGCAGAGGGCGCACGTGTTTGAC
TGGAAATGTGCTCTTCTGGCAATGTGGAGCGTTGTTCGTCGTGAGAAATT
GGAGGCCGCCGCAATTTGGCACGCCCTCAGGGGAGCTCCAAACACTTGAA
AAGTAGCGTTCGGGCCCTTGTGCCTCAGACTGCTGTAGTAGTCTATAGTT
GAAGTACAAGGTGCAGTAAAAACAGAACTCCAAAAAGCAGCTCTATCCAC
GGGCTCGAGCCGCGCTGAATTCTACAGTTCAACCAGAGGGCTACATATTT
TTTCAGCTTCTTGGGATAAGCTCGACCGCTGAAGTCTACGCCTTGTGCGA
GCGCCTGGTACTCGACGTGTGATTTTTGCCATTCATAGATGCTACTGATG
TACCTCAAACAGCAACGTGCTGTACAGAACAAATTACGACACGCAGAACG
GGACGGCCGAACCTGTCTCGCGAGACCAAATTCTTTGGCGCGGACGAGGA
CCGGGGAGATATTTTCAACCGCTCAGCAGACTCTCGCTAAGCCGCCGACC
GTAGTACTGCCAGCGCCTCTGCGTGTGCTTTTGTGATTTCAAAGATGTTA
CTGTCTACCTCAAGAAATTGCTGTACATACGAATTACCAAAGGCAGGACG
GGATGGCCGAACCTGTCTCGCGACACCAAATTCTCAGGCGCGTACAGGTC
CTGTTTTGTTTGTATCTATCTCACTTACGGTCGATGGGCCTCAACGTGCT
AGGTTACCGTTACCAATCCCACCTGCCATCCTGCCTGTGGTCACGAAGGA
TCTTACCATCTCTCCCCAGTTCTCGTCTTACACTGAATTTTTATCGCGAT
GTAGTCTATGGAGACAAGGAAATATTTTATTTCTCCTGTTGACCAGAGGG
AGGATTGGCAACTGAACTGTGAAGGTTGAAGTCGAGTCTGGAATTCGGTT
CAGACACAACAAAATGCGGTACAGGCAGCATTCGACCTTGTGCGAGTACC
CGGTATTCAGCAGTAGTGGTCCTTCTTCCATGCCCTCTACGTCGGCAGCC
CGTTCAAAGACCAAGAAACGCTGAATACTTCAGCAGTATCGTACGAGGCA
CTAATATAATAGCTCTATAGCTCAACGGAGAACGTACCTAGACCTTCTGG
TGTTCGTACGCAGTCGAGTCCCCTGGAACCTCAACCTGGAATAGACTTTT
GAGGGTTATAGAGGGACAGTATATACAGAGAGAGTCTGAACGCATTTATA
CCTTCTGATCAATCAAAAGGTTTAGGTGGAAACGTTAGCTGTAGGGACAA
ATACCTCTACATGGTATGTCGCGTCTCATGAGAGGCTTTCGTGACGGTAA
TCGCCCGAGTGGTCTAGTAGGTAACCTGCATACCTACTAGTGCGGAAGTC
GCGAGTTCGATTCTTACCTTTAATCAGAATTTGTGTTCTTTCTTTTGTAA
CGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTGACGAG
TTGTAAAAGAGTACCAGGTACCGAACTTGCATCGCGATAAAAAAATGTAA
GGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGAT
GGTTGTTAGAGGTCCATCGGCTATGAATATAAGTGTGATTAAAAAAAAAA
AAAAAAAAAAAAAAGAGGCTTTCGGGGCGGCAACCACAATTTACCGTGCA
CTTACTGTAGGGGCGGCCAAACAAGAATATACTGAGTACCTGATACTACA
GTTGTAGCTTACCATATCAGATAGACTAGAATGGTTATTATTATTATTAG
TAATATTAATAGTAGCTCGAAAAGGGCCTGACCGCGCGGTATCATATGTG
TAACTCATGATGGTACAGTACTATTATCGACACTAATACTATCCCCGTAA
ATATGTAGTACTGTACTGTCTGTGGTTATGTATGTATGGTCATCACATAT
AGCAGAGTATGGATCAACCGGTAAGGTTGCCAATCCTGCTCGTGGTTAGC
TGAACAGGGAAAATAATATTATATTCCCCTGTCCCCGTGCGTGCCTGAGA
GTTTGGTCTCGCGAGACGGGTTCAGGCGTCCCGTCCCGCGTCAGCCTGCT
CATCCCCATACTCAGACTGAATCTGGTGCTTACTTACGGGATTCCTCCCG
AGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCATCGGGTCAA
TCCCGAGTTTATCGGGTCACGCAATTACAGGGCCAGTAAACCTCAAGGTA
GTTCCGATCGGGTGCTGCCTTGGCAGATCACCATGGACCAATTAATCTGT
GCCTCTCTTTCCCACCCCCACTAGTGGTATGAAGTGGGCATGTTGAAAGT
ACCGGCGTTATGTTGAGCTATGATTGGTGGCTGTGCATGGTGATCAATAT
AAGTGTACAGTATAACGATGGGCTTCTCCCCGACATTATACTGTTGACCC
AAGGTTAATACCACTGGGGAACCCGATTAAATACCATGTAATAGCTTTGT
ATTTATAGCCTGTATAATGTATATTACTACTACCATGTGTGATGGTGTAC
TACATTTTCTCTGGTTTGTTTTTAATTTGTTTCTGGTGTAACTGCATAGC
GATTAATGTAAGTGTACGGTATAACGGTGGGCTTCTCCCCGACATTATAC
TGTTGACCCAATTTTATTTGCATCGGGGAACCTGTTTCATTGCCATGAAG
AGGTTTTGTATTTGCAGCCTTTGATACCACCTAAACGTTTTGACATTTCC
CCCCCCCTAACCGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGATTTTT
CTTTAAATACGCGGACATACACATACACATGGGAACATAGAGAGGAGAGC
GCAAAACGGCAATAACTGTAGTGTAGATGGGATTACGCAAGAAGGGTATC
GCATCTACCTGCAGTTTTTGTTAAAAGCAATCAAGACAATCAAAACAATC
ACCGATCCATTGTGGGCTACAACGCGAGTAGCTTAGACCAACTAGGATGG
CCGGGCCAGATTGCGTCGTTATGGGCAATGTAATAAAATGCACACCCGTC
TTGTGAAGAGGTTATCATATCGTGACGACAGCAAACGATGATCCCCCCAA
TGGGAGACCACTACGAGTAGCATAGGATACAAAATAATAGTGGTGCGACA
AGGCCGGATTGCGCGGCAGGTCCGTTTTATGGGCGTACATCCCTCAGTAA
GCAAATTCCTTACGCATAAACACTTTCAAGCCATGGTTGTCAGACAACAA
GCGAATAACGTTTCTGAAACAGACTTGTCGGAACCTCACGGCGCCTCTTA
AACGCCTGGTCCCACTGACTTCGTTAGAATATCCGCGCGCTGTCCCCTCG
AGGCCACACCGTAAAACACAACCTGCCGAGCCTTCAGCAGTACTCGTGGC
AAGAAGATGCGCAAGTCCATGTGTTTACTTTTACTTCCACCTTTTTGTAT
CCACGTTGTTTTAACCTCTACTCGTAGCGCAGATCGATGCTACTGCGACT
AGGGCGTGGCCGGACAACCCTCAACACCGCTCTTATAGCCGAAGCAGTCT
ACACCCTGTTAGGCCTTTGCCCACATAAATCAGTCTTTTGCCAGTAAGCA
GCGCCACGCAATGCTTCGTTTTTCGATTCCCAGTCACAATCGCGTTTTTG
AGCTTGATCCTAGCACCCGAAACGACTTTCTAGCACTAGATATGTCAGCG
TAGTTCGCGTCACCAAAGAAAAAGAGCTTCAAGCCCTCCCCCCACCCCCA
GCCCCCCCAAAAAACAAAAAATAACGCTGAACTGTACTGTACTGTACCCA
AATACTTACTTGGTCGCCTGAAGAGTTGACAGATATCTTACGAGCCGCTT
TTCGAAGCATCGCAACCGGAGGGTGACCGTGACCTGTCAGGATCCTTTCA
GCAATTGGGTATTTCTCTGCCGTGTCATCCTCGAGATCCACACGTAACAG
GCCGCCAACATCATTACCATTTACTATTAATAGTAGTTCGGCTTGTGTAT
CAATAATTAATTGTTGCCTTTCAGCAAAACCCCTTCCGGACCGAGGTGAT
AACTCGACGGGCGCGAGAGCAACCTCATGTCTCAAACTGAGCATCAAACC
AGCGTGTCTGGTGTTGGCAGGGTGAGATCTAGGCTAGAAGGCATGACAGT
ATTAGATACCATGTGGCGCATGATGCTATCCAGGTGGTGTCATTGTCGTC
GCATGATGCGAATAATGCCTGAGTAGTATATACTGGTGTGACACTTATGA
AGACCGCCCCCCGCCCCCTCCCCCCATTCCTTTGCAGGCTGGAGACGTGG
CTCGGTCGACCGGGCGTGCAGGCTTGGCGGTGATCAACAAAGGAAAAGAG
CTCAACGATCGTTACGGGTTCGGCGAAAAGGTGGGTGGGCTCGCGATGAT
CGGCAGAAAGAGCTATTTAGCTCAGCTGAAGCGATATTTATTTTGGAATG
TTCCAACATCTCTCCGAGTCGGAGAAATACTCTGCGCACATCGACGGCGT
GCACGCGCAAAGGTGTATTTTTCTGTAGTATGTGAGTCCGACATACAGTT
TGTCTGGCCTGGTTTCCCACAGCGAAATATTCCATATTTCCCTGTGGAGA
AAGTTATGATCTGTTGTTGTTGTTTCTCACCTTCAACGCATTGGTTGCCA
ACCGAAAAAACTACTTTACACGGTGGCCAATCCCGCTCGTGGTCTGCTGA
ACGGGGAAAGAAAATAAAAATTGTGAAGCCTGGCAGCGCACCCCCCCCCC
TCCCTCCCGCCCCGCGCTGCTCGTTCGGAGAAAATAAAACAAAACAAAAA
ATCACGCGACGCATCTACATGCCTAGGCGCTACGCAGGTTTCGGTCCGTC
TCGCGTCTGCACAAGAATTCCTTCGACTCGTCGGTTGGGCCAATGGGTGT
CGCTTTGCAAGATCCTACGCTTCCGTGTGCGATAACAACTTTCCCAGTCT
CGCTGTCTGTCTCTTCTCCTGGCGATGTATGAAGGTTTTCAAAAGACTCA
GGTAGCGAGTGCTTTTGTCCATGCTACTACTGTAATCAATCTAGGATTCT
TCTAACGATGCTTCATGCTCTGTGGACCTACTCATCGTCCTAACCTGACA
AGGTCAAGGACGCGGCACACACTACATATGAGAAGGCTAAGGAAGTAGAT
GCCGAACACGGTGTCGTGGACAAGGCGAAAGCCGGAGCGTCGCGGGCATG
GCAGCGAGCGAGAGAGGTGATACGCTTCTCTTATTTCCGGTCGCTCGCGC
TCATTTGGTTCGAACTACAGGGAACAGTAATGGCATGTGTTGATGGGCAT
CTTGAGGCCATCGTCAGCATCTTTTGTTTCCCACCAGCGGTCTAGTAAAC
TACAGCTAGCTGCAGCGCGCACCTATGCCTCCTCAAATGGCGCAGCTCGC
GTTTATGGTTACCACAAAACTGGTGGTGTCTTGATAAACGTCGTGAGTTG
TCCTGAACAATAACAGGTATTAAAGGGAACAAGATGCCCATCATTTTATA
CTTGAAACCTCCCCCCCCCCACACTCTTCAGAATTGTGCTCTTTCGTGCC
TCGTCACTTGCTAATAACGACGACTTTATACAGAGTTCCACCTCTGTTGC
CGAACTTGACCCCTGATGCCCCGTCTTCGACGCTTGGTGTCGGCAAGGTG
GACAGGGAGCACCGCCTAAGCGAAAGGGCGGGCGAGGCTATCGGGAAGAC
CATGGAGAGCGTAGCTGATGCGCTGTCGGAGGAGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:533941..539827-

>mRNA_F-serratus_M_contig143.3076.1 ID=mRNA_F-serratus_M_contig143.3076.1|Name=mRNA_F-serratus_M_contig143.3076.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig143:533941..539827- (Fucus serratus male)
GAACAAGGACAGAGGGAAAAGGGTAATCCATCACCCGGAGTTATCGGGGG
TGCGGCATTTGTCGGTGCTGGTGTAGGCGCCTTATTTGGTGGGCCTTTCA
TCGCGATAGGTCTGGGGGCGACTGCGGCAGGACTGTGCCTCAGCGACAAT
AAGGAACAAGGACAGAGGGAAAAGGGTAATCCATCACCCGGAGTTATCGG
GGGTGCGGCATTTGTCGGTGCTGGTGTAGGCGCCTTATTTGGTGGGCCTT
TCATCGCGATAGGTCTGGGGGCGACTGCGGCAGGACTGTGCCTCAGCGAC
AATAAGGCTGGAGACGTGGCTCGGTCGACCGGGCGTGCAGGCTTGGCGGT
GATCAACAAAGGAAAAGAGCTCAACGATCGTTACGGGTTCGGCGAAAAGG
CTGGAGACGTGGCTCGGTCGACCGGGCGTGCAGGCTTGGCGGTGATCAAC
AAAGGAAAAGAGCTCAACGATCGTTACGGGTTCGGCGAAAAGGTCAAGGA
CGCGGCACACACTACATATGAGAAGGCTAAGGAAGTAGATGCCGAACACG
GTGTCGTGGACAAGGCGAAAGCCGGAGCGTCGCGGGCATGGCAGCGAGCG
AGAGAGGTCAAGGACGCGGCACACACTACATATGAGAAGGCTAAGGAAGT
AGATGCCGAACACGGTGTCGTGGACAAGGCGAAAGCCGGAGCGTCGCGGG
CATGGCAGCGAGCGAGAGAGGTGGACAGGGAGCACCGCCTAAGCGAAAGG
GCGGGCGAGGCTATCGGGAAGACCATGGAGAGCGTAGCTGATGCGCTGTC
GGAGGAGGACGTGGACAGGGAGCACCGCCTAAGCGAAAGGGCGGGCGAGG
CTATCGGGAAGACCATGGAGAGCGTAGCTGATGCGCTGTCGGAGGAGGAC
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