mRNA_F-serratus_M_contig1402.2921.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1402.2921.1
Unique NamemRNA_F-serratus_M_contig1402.2921.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.650e-13
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   23 PLHHACISGTAIAADLLLRWGADEMAVNTE-----------IMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNR--LSIHSPKMRTD 274
            PL  AC  G   AADLLLRWGADE AV+++           I  A + +    E ++ LL RAPQDRAWRRRGFL+ C ++P+R  L++  P+  T+
Sbjct:  162 PLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLAVEIPEAATE 258          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.500e-12
Identity = 61/179 (34.08%), Postives = 83/179 (46.37%), Query Frame = 2
Query:    2 QDTSRFHPLHHACISGTAIAADLLLRWGADEMAVNTE-----------IMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI------------HSPKMRTDKRSSKLRREEVAREDEDGGESACGS----------------FADVAGWLVMLGEKLVFCHIVTYL 421
            ++  R   L  AC  G   AA LLL WG DE A+++E           I  A     P  E L+RLL RAPQDRAWRRRGFL+L R +P+R+ +              P+ R  +R+S   + EV   +  GG +   S                F  V+ W++ L E+ VF  IV +L
Sbjct:  190 KENERITSLSSACSFGNHDAAGLLLSWGGDENAMDSEGETVVFMVMQQIAEAPASVRPPLERLSRLLARAPQDRAWRRRGFLVLGRVHPDRVRLAVEIPPAAADATEQPQQRPRRRAS-TGQVEVDGTNGGGGXTGASSGVRAGIEAVHEGTVAGFGGVSAWMMALTEEGVFRRIVGFL 367          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.450e-12
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 2
Query:    2 QDTSRFHPLHHACISGTAIAADLLLRWGADEMAVNTEIMTAHI--------------ENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
            +D++    LH AC      A DLLLRWGADE  V+ E  T +               EN   ++ L++LL  APQDR+WRRRGFL++CR + +RL +
Sbjct:   14 RDSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADEAEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRTHQDRLRL 110          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7G292_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G292_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.410e-12
Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   35 ACISGTAIAADLLLRWGADEMAVNTE-----------IMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
            AC      AADLLLRWGADE AVN E           I  A     P  E +++LL RAPQDRAWRRRGFL+LCRA+ +R+ +
Sbjct:  284 ACFFCHHDAADLLLRWGADETAVNLEGETVVSMVIRRIAEALETRCPPLERVSKLLARAPQDRAWRRRGFLVLCRAHRDRVRL 366          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-10
Identity = 52/152 (34.21%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   23 PLHHACISGTAIAADLLLRWGADEMAVNTE-IMTAHI------------ENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSIH---SPKMRTDKRSSK---LRREEVAREDEDGGESACGSFADVAGWLVMLGEKLVFCHIVTYL 421
            PLH AC   +    +LLLRWGADE   N    M A +            E+  + + + R+L RAP DR+WRRRG+L+L R  P R+ I    S +   +  S+K   L  E+  R DE+  +       D+  WLV L    +F  +V +L
Sbjct:  119 PLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRGSYNGNSAKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.110e-10
Identity = 41/80 (51.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query:   26 LHHACISGTAIAADLLLRWGADEMAVN----------TEIMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYP 235
            LH AC      AADLLLRWGADE AV+            I  A  EN P    LT+LL+ A QDR WRRRG L++CRA+P
Sbjct:  281 LHTACHVVNPDAADLLLRWGADETAVDWNGATTSAVIPRIDEAPEENGPAILRLTKLLKFADQDRTWRRRGLLVMCRAHP 360          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-10
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   29 HHACISGTAIAA---DLLLRWGADEMAVNTE---IMTAHIENHPEF-------EALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
            H  C SG +  A   DLLLRWGADE AV++     +T   EN   +       +++ ++ +RAP+D+AWRRRG+L+LCRA+PNR+ +
Sbjct:  740 HDQCTSGDSAMATTMDLLLRWGADENAVDSAGRTPVTVWRENESMYTLSWANKQSVKKMFQRAPRDKAWRRRGWLVLCRAFPNRVRL 826          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.240e-10
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   47 GTAIAADLLLRWGADEMAVNTEIMTA---------HIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
            G+A   DLLLRWGADE  V+ +  TA         H  +  + E    LL RAP DRAWRRRG L+LCRA+P+RL +
Sbjct:  288 GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL 364          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.820e-9
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   23 PLHHACIS---GTAIAADLLLRWGADEMAVNTEIMTAH---IENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSIHS 256
            PLH  C+         ADLLLRWGADE A++ E  T     + +    +AL  +L++AP DRAWRRRG L++CRA P  +S  S
Sbjct:  361 PLHMLCMKPRLNPDDTADLLLRWGADETAIDNEGYTPKARIVGSSNGSQALRHMLDKAPVDRAWRRRGTLIMCRALPGIVSTTS 444          
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.850e-9
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 2
Query:   23 PLHHACISGTAIAADLLLRWGADEMAVN------TEIMTAHIE---NHPEFEA----LTRLLERAPQDRAWRRRGFLMLCRAYPNRLSIHSPKMRTDKRSSKLRREEVAREDEDGGESACGSFADVAGWLVMLGEKL 394
            PLH AC+     A +LLLRWGADE   N       +++  +     N  + +A    + R+L RAP DR+WRRRG+L+L R+ P R+ I +   R ++ S   +   V+ ED  G E    +   V  W  ++G  L
Sbjct:  354 PLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRVNRNSCPAKVARVSGEDLGGDEEEAENQMTV-DWGGLVGSLL 489          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFY7_9PHAE6.650e-1345.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU78_9PHAE1.500e-1234.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7V4_9PHAE2.450e-1241.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G292_ECTSI6.410e-1251.81Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXF0_9PHAE1.700e-1034.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM65_ECTSI3.110e-1051.25Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7G751_ECTSI4.200e-1043.68Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G1U1_ECTSI8.240e-1049.35Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LKW6_ECTSI5.820e-945.24Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LB27_ECTSI5.850e-934.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1402contigF-serratus_M_contig1402:113199..113757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size541
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1402.2921.1prot_F-serratus_M_contig1402.2921.1Fucus serratus malepolypeptideF-serratus_M_contig1402 113316..113663 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929386.8076327-UTR-F-serratus_M_contig1402:113198..1133151622929386.8076327-UTR-F-serratus_M_contig1402:113198..113315Fucus serratus maleUTRF-serratus_M_contig1402 113199..113315 -
1690962828.4396248-UTR-F-serratus_M_contig1402:113198..1133151690962828.4396248-UTR-F-serratus_M_contig1402:113198..113315Fucus serratus maleUTRF-serratus_M_contig1402 113199..113315 -
1622929386.8525162-UTR-F-serratus_M_contig1402:113663..1137571622929386.8525162-UTR-F-serratus_M_contig1402:113663..113757Fucus serratus maleUTRF-serratus_M_contig1402 113664..113757 -
1690962828.4623153-UTR-F-serratus_M_contig1402:113663..1137571690962828.4623153-UTR-F-serratus_M_contig1402:113663..113757Fucus serratus maleUTRF-serratus_M_contig1402 113664..113757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929386.8222077-CDS-F-serratus_M_contig1402:113315..1134621622929386.8222077-CDS-F-serratus_M_contig1402:113315..113462Fucus serratus maleCDSF-serratus_M_contig1402 113316..113462 -
1690962828.4473877-CDS-F-serratus_M_contig1402:113315..1134621690962828.4473877-CDS-F-serratus_M_contig1402:113315..113462Fucus serratus maleCDSF-serratus_M_contig1402 113316..113462 -
1622929386.8374786-CDS-F-serratus_M_contig1402:113480..1136631622929386.8374786-CDS-F-serratus_M_contig1402:113480..113663Fucus serratus maleCDSF-serratus_M_contig1402 113481..113663 -
1690962828.4550202-CDS-F-serratus_M_contig1402:113480..1136631690962828.4550202-CDS-F-serratus_M_contig1402:113480..113663Fucus serratus maleCDSF-serratus_M_contig1402 113481..113663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1402.2921.1

>prot_F-serratus_M_contig1402.2921.1 ID=prot_F-serratus_M_contig1402.2921.1|Name=mRNA_F-serratus_M_contig1402.2921.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MAVNTEIMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRL
SIHSPKMRTDKRSSKLRREEVAREDEDGGESACGSFADVAGWLVMLGEKL
VFCHIVTYL*
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mRNA from alignment at F-serratus_M_contig1402:113199..113757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1402.2921.1 ID=mRNA_F-serratus_M_contig1402.2921.1|Name=mRNA_F-serratus_M_contig1402.2921.1|organism=Fucus serratus male|type=mRNA|length=559bp|location=Sequence derived from alignment at F-serratus_M_contig1402:113199..113757- (Fucus serratus male)
ACAAGACACATCCCGATTTCATCCCTTGCACCACGCTTGCATATCGGGCA CCGCCATCGCCGCAGACCTGCTGTTAAGGTGGGGTGCAGACGAAATGGCC GTAAACACCGAAATAATGACGGCCCACATCGAAAACCACCCTGAGTTCGA GGCTCTTACTAGGCTACTGGAGCGTGCTCCGCAAGATAGGGCGTGGCGTC GCCGGGGCTTCCTGATGCTGTGCCGCGCTTACCCAAACAGGTTAAGCATT CACAGCCCCAAAATGAGGACAGACAAAGCAATGGGGTCGCACGAGCGCTC GAGCAAACTAAGGCGAGAGGAAGTTGCGAGAGAGGACGAGGACGGTGGTG AAAGTGCGTGTGGGAGCTTCGCGGACGTCGCGGGGTGGCTCGTGATGCTG GGGGAAAAGTTGGTTTTCTGTCACATTGTGACGTACCTATAAGTCAATGA AACATGGAGTGGGCGTACGTTGTTGTTGCTGTTCGTTGTTTCTCACATTA AGTGTATTGGTGACCAATCCCGCTCGTGGTCTGCTGAACAGGAAAAGAAA GAAAAGAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1402:113199..113757-

>mRNA_F-serratus_M_contig1402.2921.1 ID=mRNA_F-serratus_M_contig1402.2921.1|Name=mRNA_F-serratus_M_contig1402.2921.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1402:113199..113757- (Fucus serratus male)
ATGGCCGTAAACACCGAAATAATGACGGCCCACATCGAAAACCACCCTGA
GTTCGAGGCTCTTACTAGGCTACTGGAGCGTGCTCCGCAAGATAGGGCGT
GGCGTCGCCGGGGCTTCCTGATGCTGTGCCGCGCTTACCCAAACAGGTTA
AGCATTCACAGCCCCAAAATGAGGACAGACAAAATGGCCGTAAACACCGA
AATAATGACGGCCCACATCGAAAACCACCCTGAGTTCGAGGCTCTTACTA
GGCTACTGGAGCGTGCTCCGCAAGATAGGGCGTGGCGTCGCCGGGGCTTC
CTGATGCTGTGCCGCGCTTACCCAAACAGGTTAAGCATTCACAGCCCCAA
AATGAGGACAGACAAACGCTCGAGCAAACTAAGGCGAGAGGAAGTTGCGA
GAGAGGACGAGGACGGTGGTGAAAGTGCGTGTGGGAGCTTCGCGGACGTC
GCGGGGTGGCTCGTGATGCTGGGGGAAAAGTTGGTTTTCTGTCACATTGT
GACGTACCTATAACGCTCGAGCAAACTAAGGCGAGAGGAAGTTGCGAGAG
AGGACGAGGACGGTGGTGAAAGTGCGTGTGGGAGCTTCGCGGACGTCGCG
GGGTGGCTCGTGATGCTGGGGGAAAAGTTGGTTTTCTGTCACATTGTGAC
GTACCTATAA
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