mRNA_F-serratus_M_contig1402.2921.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 6.650e-13 Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query: 23 PLHHACISGTAIAADLLLRWGADEMAVNTE-----------IMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNR--LSIHSPKMRTD 274
PL AC G AADLLLRWGADE AV+++ I A + + E ++ LL RAPQDRAWRRRGFL+ C ++P+R L++ P+ T+
Sbjct: 162 PLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQLAVEIPEAATE 258
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5JU78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU78_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.500e-12 Identity = 61/179 (34.08%), Postives = 83/179 (46.37%), Query Frame = 2
Query: 2 QDTSRFHPLHHACISGTAIAADLLLRWGADEMAVNTE-----------IMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI------------HSPKMRTDKRSSKLRREEVAREDEDGGESACGS----------------FADVAGWLVMLGEKLVFCHIVTYL 421
++ R L AC G AA LLL WG DE A+++E I A P E L+RLL RAPQDRAWRRRGFL+L R +P+R+ + P+ R +R+S + EV + GG + S F V+ W++ L E+ VF IV +L
Sbjct: 190 KENERITSLSSACSFGNHDAAGLLLSWGGDENAMDSEGETVVFMVMQQIAEAPASVRPPLERLSRLLARAPQDRAWRRRGFLVLGRVHPDRVRLAVEIPPAAADATEQPQQRPRRRAS-TGQVEVDGTNGGGGXTGASSGVRAGIEAVHEGTVAGFGGVSAWMMALTEEGVFRRIVGFL 367
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.450e-12 Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 2
Query: 2 QDTSRFHPLHHACISGTAIAADLLLRWGADEMAVNTEIMTAHI--------------ENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
+D++ LH AC A DLLLRWGADE V+ E T + EN ++ L++LL APQDR+WRRRGFL++CR + +RL +
Sbjct: 14 RDSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADEAEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRTHQDRLRL 110
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7G292_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G292_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 6.410e-12 Identity = 43/83 (51.81%), Postives = 51/83 (61.45%), Query Frame = 2
Query: 35 ACISGTAIAADLLLRWGADEMAVNTE-----------IMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
AC AADLLLRWGADE AVN E I A P E +++LL RAPQDRAWRRRGFL+LCRA+ +R+ +
Sbjct: 284 ACFFCHHDAADLLLRWGADETAVNLEGETVVSMVIRRIAEALETRCPPLERVSKLLARAPQDRAWRRRGFLVLCRAHRDRVRL 366
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.700e-10 Identity = 52/152 (34.21%), Postives = 74/152 (48.68%), Query Frame = 2
Query: 23 PLHHACISGTAIAADLLLRWGADEMAVNTE-IMTAHI------------ENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSIH---SPKMRTDKRSSK---LRREEVAREDEDGGESACGSFADVAGWLVMLGEKLVFCHIVTYL 421
PLH AC + +LLLRWGADE N M A + E+ + + + R+L RAP DR+WRRRG+L+L R P R+ I S + + S+K L E+ R DE+ + D+ WLV L +F +V +L
Sbjct: 119 PLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRGSYNGNSAKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 3.110e-10 Identity = 41/80 (51.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query: 26 LHHACISGTAIAADLLLRWGADEMAVN----------TEIMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYP 235
LH AC AADLLLRWGADE AV+ I A EN P LT+LL+ A QDR WRRRG L++CRA+P
Sbjct: 281 LHTACHVVNPDAADLLLRWGADETAVDWNGATTSAVIPRIDEAPEENGPAILRLTKLLKFADQDRTWRRRGLLVMCRAHP 360
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 4.200e-10 Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 2
Query: 29 HHACISGTAIAA---DLLLRWGADEMAVNTE---IMTAHIENHPEF-------EALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
H C SG + A DLLLRWGADE AV++ +T EN + +++ ++ +RAP+D+AWRRRG+L+LCRA+PNR+ +
Sbjct: 740 HDQCTSGDSAMATTMDLLLRWGADENAVDSAGRTPVTVWRENESMYTLSWANKQSVKKMFQRAPRDKAWRRRGWLVLCRAFPNRVRL 826
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 8.240e-10 Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 2
Query: 47 GTAIAADLLLRWGADEMAVNTEIMTA---------HIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSI 250
G+A DLLLRWGADE V+ + TA H + + E LL RAP DRAWRRRG L+LCRA+P+RL +
Sbjct: 288 GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQL 364
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 5.820e-9 Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query: 23 PLHHACIS---GTAIAADLLLRWGADEMAVNTEIMTAH---IENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLSIHS 256
PLH C+ ADLLLRWGADE A++ E T + + +AL +L++AP DRAWRRRG L++CRA P +S S
Sbjct: 361 PLHMLCMKPRLNPDDTADLLLRWGADETAIDNEGYTPKARIVGSSNGSQALRHMLDKAPVDRAWRRRGTLIMCRALPGIVSTTS 444
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 5.850e-9 Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 2
Query: 23 PLHHACISGTAIAADLLLRWGADEMAVN------TEIMTAHIE---NHPEFEA----LTRLLERAPQDRAWRRRGFLMLCRAYPNRLSIHSPKMRTDKRSSKLRREEVAREDEDGGESACGSFADVAGWLVMLGEKL 394
PLH AC+ A +LLLRWGADE N +++ + N + +A + R+L RAP DR+WRRRG+L+L R+ P R+ I + R ++ S + V+ ED G E + V W ++G L
Sbjct: 354 PLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGSRVNRNSCPAKVARVSGEDLGGDEEEAENQMTV-DWGGLVGSLL 489 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1402.2921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1402.2921.1 >prot_F-serratus_M_contig1402.2921.1 ID=prot_F-serratus_M_contig1402.2921.1|Name=mRNA_F-serratus_M_contig1402.2921.1|organism=Fucus serratus male|type=polypeptide|length=110bp MAVNTEIMTAHIENHPEFEALTRLLERAPQDRAWRRRGFLMLCRAYPNRLback to top mRNA from alignment at F-serratus_M_contig1402:113199..113757- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1402.2921.1 ID=mRNA_F-serratus_M_contig1402.2921.1|Name=mRNA_F-serratus_M_contig1402.2921.1|organism=Fucus serratus male|type=mRNA|length=559bp|location=Sequence derived from alignment at F-serratus_M_contig1402:113199..113757- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1402:113199..113757- >mRNA_F-serratus_M_contig1402.2921.1 ID=mRNA_F-serratus_M_contig1402.2921.1|Name=mRNA_F-serratus_M_contig1402.2921.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1402:113199..113757- (Fucus serratus male)back to top |