mRNA_F-serratus_M_contig140.2907.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig140.2907.1
Unique NamemRNA_F-serratus_M_contig140.2907.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 2.230e-49
Identity = 90/175 (51.43%), Postives = 111/175 (63.43%), Query Frame = 1
Query:   13 MGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDASCEPNNFTCMDPDSGCVDA--TLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDCKGENGYDFF---------CLDPNSKCA---DLTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
             GDG+CD   NNE CG+DGGDCCECTCV     D SC  N+  C+DP + CVD     +D ++  G VGS+GNG+CD  NNN E CG+DGGDCCECTC P    +   D+F         C+DPN+ C    D+TL    NC  D   +G+G CD +NNNEAC +DGGDCC+CTC
Sbjct:   61 FGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANS-ACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNN-EGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENC--DSVAVGNGFCDMDNNNEACAYDGGDCCECTC 231          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 6.720e-40
Identity = 84/183 (45.90%), Postives = 107/183 (58.47%), Query Frame = 1
Query:   13 MGDGYCDSGYNNEACGWDGGDCCECTCVFN----LKRDASCEPN---NFTCMDPDSGCVD-----ATLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDCKGENGYDFFC-------LDPNSKCAD---LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            +G+G CDS  NNE C +DGGDCCECTC  +          C+      F C+DPD+ CVD     A ++D        G IGNG+CD  NN+ E C +DGGDCCECTC      ++GY+++C       +DP ++C D    T  +Y +C G V  IGDG CD ENN E CG+DGGDCC CTC
Sbjct:  166 IGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCS----TGQIGNGYCDDSNNSPE-CAYDGGDCCECTCE---SHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHC-GWVTRIGDGMCDDENNKEECGFDGGDCCDCTC 339          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 9.220e-39
Identity = 87/190 (45.79%), Postives = 109/190 (57.37%), Query Frame = 1
Query:   13 MGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDAS---------CEP--NNFTCMDPDSGCV--DATLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTC-APDCK------------GENGYDFFCLDPNSKCAD---LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            +GDGYCD   NNE CG+DGGDCCECTCV   K   S         C    + F C+DP + CV  D    D ++  G V  +G+G+C   NNN E CG+DGGDCCECTC AP               G  G  F C+DP++ C D   +T+    +C  D  +IGDG C+ +NNNEAC +DGGDCC+CTC
Sbjct:   59 LGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENCGYVRGLGDGWCHEENNN-ELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESC--DTVSIGDGYCNMDNNNEACAYDGGDCCECTC 245          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.090e-37
Identity = 83/175 (47.43%), Postives = 101/175 (57.71%), Query Frame = 1
Query:   13 MGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRD----ASCEPNNFTCMDPDSGCVDATLLDY-IDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDCKGENGY------DFFCLDPNSKCAD---LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
             GDGYC    NN  CG+DGGDCCECTC      D     S +   F C+DPD+ CVD   +   I  N     +GNG+CD  +NNNE CG+D GDCCECTC      ++ Y       F C+DP + C D   +T+    NC G V  +GDG CD  NNNE CG+DGGDCC+CTC
Sbjct:   29 FGDGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDE-DNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.710e-37
Identity = 83/178 (46.63%), Postives = 103/178 (57.87%), Query Frame = 1
Query:   13 MGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDASCEPNNFTCMDPDSGCVD---ATLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDCKGENGYD-----------FFCLDPNSKCAD---LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            +GDGYC    N   C +DGGDCC CTC      D  C    F C+DP++ CVD    T+  + +C   V  IGNG+CD  NN  EACG+DGGDCCECTC    + E+ YD           F C+DP++ C D   +T+    NC G V+ IG+G CD  NN E CG+DGGDCC CTC
Sbjct:  131 IGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCMW--FACIDPEAACVDDDDITVDMFENCEYPV-DIGNGWCDEANNI-EACGYDGGDCCECTC----EYESPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 299          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.640e-36
Identity = 80/174 (45.98%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    1 YLGSMGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDASCEPNNFTCMDPDSGCVD-----ATLLDYI-DCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTC---APDCKGENGYDFFCLDPNSKCADLTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            Y+ S+GDG+C    NNE C +DGGDCCECTCV        C    F C+DP + CVD     A + +   D  G V  +GNG+C+  NN  E C +D GDCC+CTC   + D    +  DF C+DPN+ C D  + E      D  N GDG C+  NNNE CG+DGGDCC+CTC
Sbjct:   70 YVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAFYP---CGYVAFACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEE-CDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCVDDDVTE--GMFEDCFNFGDGFCNDYNNNEQCGYDGGDCCECTC 237          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 7.990e-36
Identity = 82/178 (46.07%), Postives = 102/178 (57.30%), Query Frame = 1
Query:   16 GDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDAS--CEPNN--FTCMDPDSGCV---DATLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCA--PDCKGEN------GYDFFCLDPNSKCA---DLTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            GDGYC    NN  CG+DGGDCCECTC      D    C  N   F C+DPD+ C      T+    +C  D   +G+G+CD  NNN E CG+DGGDCCECTC    D   +N      G  F C+DP++ C    D+T+    +C  D   +GDG CD +NNN AC +DGGDCC+CTC
Sbjct:   37 GDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQEC--DFWDLGDGWCDQVNNN-ELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESC--DAVGMGDGYCDMDNNNAACAYDGGDCCECTC 209          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 7.680e-35
Identity = 80/177 (45.20%), Postives = 103/177 (58.19%), Query Frame = 1
Query:   10 SMGDGYCDSGYNNEACGWDGGDCCECTCVF---NLKRDASC--EPNNFTCMDPDSGCVD-----ATLLDYID--CNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDCKGENGYDFFCLDPNSKCAD---LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            ++GDG CD   N E C +DGGDCC CTC         D S   E   F C+DPD+ CV+     A L + +   C G++  + +G CD  NNN E CG+DGGDCC CTC  D        F C+DP+++CAD   +T+    NC   V +IGDG+CD +NN E C +DGGDCC CTC
Sbjct:  103 AIGDGNCDKDNNTEECDYDGGDCCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKETCGGNIVHLADGDCDQINNNEE-CGYDGGDCCFCTCLDDFYECGIRGFACIDPSAECADDDDVTVDTVENCG--VRSIGDGQCDLDNNREECHYDGGDCCSCTC 276          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.590e-34
Identity = 74/170 (43.53%), Postives = 98/170 (57.65%), Query Frame = 1
Query:   10 SMGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDASCEPNNFTCMDPDSGCVDA--TLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDCKG----ENGYDFFCLDPNSKCAD--LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            + GDG+C+   NNE CG+DGGDCCECTCV +   +  C    F C+DP + CVD      D ++ N  +  +G+G+CD+YNN  E C +DGGDCCECTC  D              C+DP + C D  +T+  Y  C  DV  +GD  C+  NN E C +D GDCC+ TC
Sbjct:   61 NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGC--TEFACIDPTAPCVDDDDVTADALE-NCMMEYLGDGYCDTYNNI-EICDYDGGDCCECTCGSDSTDVLDXXXXXXXXCIDPTASCFDENITVDMYEYC--DVELLGDSICNLSNNFEVCDYDFGDCCEATC 224          
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.250e-34
Identity = 82/184 (44.57%), Postives = 97/184 (52.72%), Query Frame = 1
Query:    1 YLGSMGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDASCEPNN--FTCMDPDSGCVDATLLDYIDCNGDVG-SIGNGFCDSYNNNNEACGWDGGDCCECTCAP-------DCKGENGYDFFCLDPN--SKCAD-------LTLLEYTNCTGDVANIGDGRCDYENNNEACGWDGGDCCQCTC 495
            Y+  +GDGYCD   N  ACG+DGGDCC CTC  + + D  C   N  + C DPD    D  L ++  C G  G    +G+CD   N  E CG+DGGDCC CTC            G  GYD  CLDP   S C+            ++  C G +  IGDG CDY NNNE C WDGGDCC CTC
Sbjct:  165 YIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRDPDVP-EDCNLANFAQCEGMNGYDWQDGYCDDDLNTAE-CGYDGGDCCRCTCRDYDSWGYYSSCGYYGYD--CLDPEAPSSCSTDSPTPSPAAGTDWPECEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTC 344          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig140.2907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI2.230e-4951.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI6.720e-4045.90Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE9.220e-3945.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI2.090e-3747.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI5.710e-3746.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE1.640e-3645.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI7.990e-3646.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE7.680e-3545.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI1.590e-3443.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP4_9PHAE2.250e-3444.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig140contigF-serratus_M_contig140:63375..63869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue8.8e-28
Seed eggNOG ortholog2880.D7FX77
Hectar predicted targeting categoryother localisation
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.2997043-UTR-F-serratus_M_contig140:63374..633861622929385.2997043-UTR-F-serratus_M_contig140:63374..63386Fucus serratus maleUTRF-serratus_M_contig140 63375..63386 +
1690962827.6209507-UTR-F-serratus_M_contig140:63374..633861690962827.6209507-UTR-F-serratus_M_contig140:63374..63386Fucus serratus maleUTRF-serratus_M_contig140 63375..63386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.312536-CDS-F-serratus_M_contig140:63386..638691622929385.312536-CDS-F-serratus_M_contig140:63386..63869Fucus serratus maleCDSF-serratus_M_contig140 63387..63869 +
1690962827.6319346-CDS-F-serratus_M_contig140:63386..638691690962827.6319346-CDS-F-serratus_M_contig140:63386..63869Fucus serratus maleCDSF-serratus_M_contig140 63387..63869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig140.2907.1prot_F-serratus_M_contig140.2907.1Fucus serratus malepolypeptideF-serratus_M_contig140 63387..63869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig140.2907.1

>prot_F-serratus_M_contig140.2907.1 ID=prot_F-serratus_M_contig140.2907.1|Name=mRNA_F-serratus_M_contig140.2907.1|organism=Fucus serratus male|type=polypeptide|length=161bp
MGDGYCDSGYNNEACGWDGGDCCECTCVFNLKRDASCEPNNFTCMDPDSG
CVDATLLDYIDCNGDVGSIGNGFCDSYNNNNEACGWDGGDCCECTCAPDC
KGENGYDFFCLDPNSKCADLTLLEYTNCTGDVANIGDGRCDYENNNEACG
WDGGDCCQCTC
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mRNA from alignment at F-serratus_M_contig140:63375..63869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig140.2907.1 ID=mRNA_F-serratus_M_contig140.2907.1|Name=mRNA_F-serratus_M_contig140.2907.1|organism=Fucus serratus male|type=mRNA|length=495bp|location=Sequence derived from alignment at F-serratus_M_contig140:63375..63869+ (Fucus serratus male)
TATTTAGGTTCTATGGGCGACGGATATTGTGATTCCGGTTACAACAATGA AGCTTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGCGTTTTTA ACCTCAAACGAGACGCCAGCTGTGAGCCAAATAACTTCACGTGTATGGAC CCAGACTCTGGATGCGTTGACGCAACCCTTCTCGATTATATCGACTGCAA TGGAGATGTGGGATCCATCGGCAATGGTTTCTGTGACTCCTACAACAACA ACAATGAAGCGTGTGGCTGGGATGGAGGGGACTGCTGCGAGTGCACATGC GCCCCTGATTGTAAGGGTGAAAATGGATATGATTTTTTTTGTTTGGACCC TAACTCTAAATGCGCTGACCTAACTCTCCTCGAGTATACCAACTGTACTG GGGATGTAGCCAACATTGGCGACGGTCGGTGTGACTACGAAAACAATAAC GAGGCTTGTGGCTGGGACGGGGGCGACTGCTGTCAGTGTACGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig140:63375..63869+

>mRNA_F-serratus_M_contig140.2907.1 ID=mRNA_F-serratus_M_contig140.2907.1|Name=mRNA_F-serratus_M_contig140.2907.1|organism=Fucus serratus male|type=CDS|length=966bp|location=Sequence derived from alignment at F-serratus_M_contig140:63375..63869+ (Fucus serratus male)
ATGGGCGACGGATATTGTGATTCCGGTTACAACAATGAAGCTTGTGGGTG
GGATGGAGGAGACTGCTGTGAATGCACATGCGTTTTTAACCTCAAACGAG
ACGCCAGCTGTGAGCCAAATAACTTCACGTGTATGGACCCAGACTCTGGA
TGCGTTGACGCAACCCTTCTCGATTATATCGACTGCAATGGAGATGTGGG
ATCCATCGGCAATGGTTTCTGTGACTCCTACAACAACAACAATGAAGCGT
GTGGCTGGGATGGAGGGGACTGCTGCGAGTGCACATGCGCCCCTGATTGT
AAGGGTGAAAATGGATATGATTTTTTTTGTTTGGACCCTAACTCTAAATG
CGCTGACCTAACTCTCCTCGAGTATACCAACTGTACTGGGGATGTAGCCA
ACATTGGCGACGGTCGGTGTGACTACGAAAACAATAACGAGGCTTGTGGC
TGGGACGGGGGCGACTGCTGTCAGTGTACGTGCATGGGCGACGGATATTG
TGATTCCGGTTACAACAATGAAGCTTGTGGGTGGGATGGAGGAGACTGCT
GTGAATGCACATGCGTTTTTAACCTCAAACGAGACGCCAGCTGTGAGCCA
AATAACTTCACGTGTATGGACCCAGACTCTGGATGCGTTGACGCAACCCT
TCTCGATTATATCGACTGCAATGGAGATGTGGGATCCATCGGCAATGGTT
TCTGTGACTCCTACAACAACAACAATGAAGCGTGTGGCTGGGATGGAGGG
GACTGCTGCGAGTGCACATGCGCCCCTGATTGTAAGGGTGAAAATGGATA
TGATTTTTTTTGTTTGGACCCTAACTCTAAATGCGCTGACCTAACTCTCC
TCGAGTATACCAACTGTACTGGGGATGTAGCCAACATTGGCGACGGTCGG
TGTGACTACGAAAACAATAACGAGGCTTGTGGCTGGGACGGGGGCGACTG
CTGTCAGTGTACGTGC
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