mRNA_F-serratus_M_contig14.2901.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig14.2901.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE) HSP 1 Score: 364 bits (935), Expect = 1.110e-106 Identity = 246/601 (40.93%), Postives = 311/601 (51.75%), Query Frame = 2
Query: 1376 VTASKYDNRTADNSGCYETGCLPEYVLDGLLNDVPDSRWSCELALTSAISECYMTFDLQESFILDGLTVYFHKSNDLERDPNPFNISISANEETGYVYSFSGVNTLGTALGTGENFSFPARSSGRYVRFTPILADEQWCSINEVEIYVTSGTLGP---------------------------------------------TSAPATLA-----PGSTIAPT----------MASTPLGGLECANVTVSNTDGFDGLYVLGANDT----FTSTGTILATIESFEQSAVCPDDSASTDCLITKWTIAS-DVDAMI-TYVAYEDVEHPAEVTEVWLRVNCSSTTGCVNSPAGVEIVCVDGSTTGGSLSTPAPGALT-SDCEIVEIVGTSGEELDGTYYDDGSSSQGGVTQFKGYDV---DLTSNGNTLAANWTTGGCPSPSETETGTDGDCSWRKWRITPGDGIMDAYEYFTFDEADHPVDIASGILWYTEDTFAEPYVGTINITCAPADTPSLQTPSEAXXXXXXXXXXXXXXXXXXXXXXXXXXDVNDGGNQDSGDGDYIPVIIGSLVGAVAVLGLVGFVAYRKIKTRPPIPPPPPSYDDLV 2968
VTA+KYD R +D++GC GC P+ + DG LNDVP+SRWSCE AL ECY TFDL S L LT+YF+K +D++R NPF +S S + T Y SF VNT+ TA+G GE+F+FP SSGRYVRFT LAD+QW SINE EIYV T P TS + ++IAPT P+GG C NVTVSN +G Y N + STG I ATI S A C D +AS DC + +W IA D D+ + TY Y++ HP+ + EVWLR++ T GC +SPA + I+C DG+T GS TPAP ++T SDC ++E+ GTSG E DG YYDDGS VTQ+ GYDV +L SNG + AN C + S + TG D CSWR+W I YFT+DEADHPVDIA+G LWYT D PY G + +TCAPA TP+L TP+ + V GG + + G VA+L ++G VAY+ PPPSYDD +
Sbjct: 35 VTATKYDTRASDSNGCGTDGCSPDLMNDGDLNDVPESRWSCETALAGTEFECYATFDLGSSQSLTKLTIYFYKCDDVDRATNPFIVSTSTDGTT-YTTSFEDVNTIPTAIGAGEDFAFPTGSSGRYVRFTGELADDQWLSINEAEIYVDVATPAPVVPEXXXXXXXXXXXPTVEVTXXXXXXXXXXXXXXXXXXXXXXXXTSGSRAIGITXXXXAASIAPTGVXXXXXXXXXXXXPIGGPACGNVTVSNAGDLNGDYASSLNGDGSVMYVSTGVIAATISSSAAPAQCADSTAS-DCNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGS-GTPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGELMSNGRAVVANRVNSTCATTSSS-TGADA-CSWRQWWIEASSS--GTVSYFTYDEADHPVDIAAGALWYTSDGSIMPYDGAVAVTCAPATTPTL-TPATSPVPTTDDDGTATRMPVEGTHSPGTAAPVVPGG-EXXXXXXXXXXXXXXVAGGVALLAILGAVAYK-------FKDPPPSYDDAM 619
BLAST of mRNA_F-serratus_M_contig14.2901.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI) HSP 1 Score: 215 bits (547), Expect = 6.040e-58 Identity = 130/263 (49.43%), Postives = 161/263 (61.22%), Query Frame = 2
Query: 1934 VSNTDGFDGLYVLGAND----TFTSTGTILATIESFEQSAVCPDDSASTDCLITKWTIA-SDVDAMI-TYVAYEDVEHPAEVTEVWLRVNCSSTTGCVNSPAGVEIVCVDGSTTGGSLSTPAPGALT-SDCEIVEIVGTSGEELDGTYYDDGSSSQGGVTQFKGYDV---DLTSNGNTLAANWTTGGCPSPSETETGTDGDCSWRKWRITPGDGIMDAYEYFTFDEADHPVDIASGILWYTEDTFAEPYVGTINITCAPADTP 2692
VSN +G Y N T+ STG I AT+ S + A C D SAS DC + +W I SD D+ + TYV Y++ HP+ + EVWLR++ T GC +SPA + IVC DG+T GS TPAP ++T SDCE +E+ GTSG E DG YYDDGS GVTQ+ GYDV +LTSNG + AN C + + T TG D CSWR+W I P YFT+DEA HPVDIA+G LWYT D PY G + +TCAPA TP
Sbjct: 3 VSNAGDLNGDYASSLNGDGSVTYVSTGVIAATLASSDAPAQCADSSAS-DCTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGS-GTPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELTSNGRAVVANRVDSTCATTT-TSTGADA-CSWRQWWIEPSSS--GTVSYFTYDEAGHPVDIAAGTLWYTSDDTVVPYDGDVVVTCAPATTP 259
BLAST of mRNA_F-serratus_M_contig14.2901.1 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI) HSP 1 Score: 149 bits (376), Expect = 1.140e-37 Identity = 83/136 (61.03%), Postives = 94/136 (69.12%), Query Frame = 2
Query: 365 DGLLNDEPDSRWSCELALTSAISECYMTFDLQQSFILDGLTVYFHKSNELDRATNPFNISISADEETGYVYSFDGVNTPGTSLGTGENFSFPATSSGRYVRFTPILADEQWCSINEVEIYVSSETLVSTSAPTVAP 772
DG LND PDSRWSCE AL ECY TFDL S L LT+YF+KSNE DR TNPF +S S D T + SF+ +NT T LG GE+F+FP SSGRYVRFT LAD+QW S+NEVEIYV V+T AP VAP
Sbjct: 3 DGNLNDVPDSRWSCETALEGTEFECYATFDLGSSQSLIKLTIYFYKSNEEDRVTNPFVVSTSTDGTT-FTTSFEDINTIPTPLGEGEDFAFPTGSSGRYVRFTGDLADDQWLSVNEVEIYVD----VATPAP-VAP 132 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig14.2901.1 >prot_F-serratus_M_contig14.2901.1 ID=prot_F-serratus_M_contig14.2901.1|Name=mRNA_F-serratus_M_contig14.2901.1|organism=Fucus serratus male|type=polypeptide|length=993bp MAFILRRLGPTLPQEPPRFVSPTPICRSFDEERCCADMQGSGISRHDGIMback to top mRNA from alignment at F-serratus_M_contig14:966280..1016347+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig14.2901.1 ID=mRNA_F-serratus_M_contig14.2901.1|Name=mRNA_F-serratus_M_contig14.2901.1|organism=Fucus serratus male|type=mRNA|length=50068bp|location=Sequence derived from alignment at F-serratus_M_contig14:966280..1016347+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig14:966280..1016347+ >mRNA_F-serratus_M_contig14.2901.1 ID=mRNA_F-serratus_M_contig14.2901.1|Name=mRNA_F-serratus_M_contig14.2901.1|organism=Fucus serratus male|type=CDS|length=5958bp|location=Sequence derived from alignment at F-serratus_M_contig14:966280..1016347+ (Fucus serratus male)back to top |