mRNA_F-serratus_M_contig1398.2854.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1398.2854.1
Unique NamemRNA_F-serratus_M_contig1398.2854.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A6H5JG07_9PHAE (Rubredoxin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG07_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 6.030e-46
Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            GD+EC QC FVY P   GQGAL GTQF++LPSTW+CPVCK+PKDTF AQTKTIAGFEDN  YG GAN MT  QKNLLIFG L AFF+LFL GY L+
Sbjct:  135 GDHECLQCGFVYKPENAGQGALPGTQFDDLPSTWICPVCKAPKDTFFAQTKTIAGFEDNANYGFGANQMTGSQKNLLIFGGLFAFFVLFLAGYALD 230          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S2RF64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF64_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.960e-33
Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            G  EC  C +VY        A  GTQF ELPS+W CP C S K  F  QT+T+AGFE+N QYG G N+MTAG+KN LIFGSLAAFF+LFLGGYLLE
Sbjct:   51 GRAECKTCGYVYDE------ATEGTQFVELPSSWRCPQCLSQKGFFEVQTRTLAGFEENLQYGFGTNTMTAGEKNNLIFGSLAAFFVLFLGGYLLE 140          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A0G4EEM1_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EEM1_VITBC)

HSP 1 Score: 120 bits (300), Expect = 1.120e-31
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGAL--SGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            GDY+C  C +VY  +K G G    + T++E++P+ W CP CK+PK+ F   T+TIAGF DNQ YG+G N++TAGQKN+LIFGSL  FFLLFL GYLLE
Sbjct:  142 GDYQCRNCGYVYR-WKQGDGIYLKANTKWEDVPTWWKCPNCKAPKNYFNPITRTIAGFADNQGYGIGTNTLTAGQKNVLIFGSLGLFFLLFLSGYLLE 238          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A6S9ELN9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ELN9_HETAK)

HSP 1 Score: 118 bits (295), Expect = 2.830e-31
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            G+++C+QC++VY P +  +  L GT F +LP+ + CP C +PK  F A T TIAGFEDNQ YG G NSMT  QKN LIFG LA FF LFL GYLL+
Sbjct:  111 GEFQCSQCNYVYKPDEGERNILPGTSFADLPTGYQCPECGAPKSFFDALTVTIAGFEDNQGYGFGTNSMTGDQKNTLIFGGLAFFFALFLSGYLLD 206          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S0GMA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GMA1_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 1.140e-30
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQGAL--SGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGY 288
            GD+EC +C FVY        +L   GT FE+LP  WLCPVC  PKDTF  Q K +AGF +NQ YG G NS+T GQK+ LI+GSLAAFF LFL GY
Sbjct:  137 GDFECVECQFVYKAENGDPESLIAKGTAFEDLPEDWLCPVCGQPKDTFEEQGKIVAGFAENQGYGFGTNSLTEGQKSALIYGSLAAFFALFLLGY 231          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A2V3IE15_9FLOR (Rubredoxin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE15_9FLOR)

HSP 1 Score: 114 bits (284), Expect = 1.500e-29
Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQ---GALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGY 288
            G YEC  C + Y P K G+   G   GT FE+LP+T+ CPVC++PK  F+++ K IAGF DNQ YG G NSMTAGQKNLLIFG L    LL L GY
Sbjct:  115 GRYECPACGYTYEP-KQGEKQAGIQPGTPFEQLPATYFCPVCRTPKSRFISKKKVIAGFADNQSYGFGTNSMTAGQKNLLIFGGLVFAALLLLSGY 209          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S3K377_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K377_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.830e-29
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 RHAGDYECTQCSFVYSPFKDGQ---GALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            +  G Y C  CS+ Y P + GQ   G   GT F +LP++W CP C++ KD F  QT TIAGF +NQ YGLG N+MT   K+ LIFGSLAAFF+LF+GGYLL 
Sbjct:   90 QETGIYICKVCSYKYDP-EVGQPIGGIQPGTPFSQLPASWRCPTCRAQKDAFEPQTLTIAGFAENQGYGLGGNAMTEESKSTLIFGSLAAFFVLFMGGYLLN 190          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: B5YMM0_THAPS (Rubredoxin, rubredoxin-type Fe4 protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMM0_THAPS)

HSP 1 Score: 109 bits (273), Expect = 1.030e-28
Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 RHAGDYECTQCSFVYSPFKDGQGALSG-----TQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLL 294
            R  G ++C+ C + Y P K     + G     T FEELPS W CP C++ KD+F    +TI GFE NQ YG G N+MT G+KN LI+G LAAFFLLF+GGY L
Sbjct:   39 RSTGIHKCSNCDWEYDPAKGDSFLIGGMIKPDTPFEELPSNWRCPTCRASKDSFREVVETIPGFEVNQGYGFGTNAMTTGEKNALIWGGLAAFFLLFIGGYAL 141          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: C1EAE7_MICCC (Rubredoxin-like domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EAE7_MICCC)

HSP 1 Score: 109 bits (273), Expect = 2.910e-28
Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    7 AGDYECTQCSFVYSPFKDGQG---ALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            +G+++C  C +VY+P K+G       SGT F++LP  WLCP C +   TF +  K +AGFE NQ YG G NSM+ G+K++LI+G+LA FF LFLGGYLL+
Sbjct:   81 SGEHQCQSCLYVYNP-KNGDPDYPVASGTAFKDLPEDWLCPTCGAAPKTFKSLGKEVAGFEQNQGYGFGTNSMSGGEKSILIYGALALFFALFLGGYLLD 179          
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S0ZKG2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKG2_9RHOD)

HSP 1 Score: 110 bits (274), Expect = 3.540e-28
Identity = 56/98 (57.14%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   10 GDYECTQCSFVYSPFKDGQ--GALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
            G +EC  CS+VY P K  Q  G   G  F+ LP T+ CP CKS K  F +  K IAGF DNQ YG G N+ T  QK+ LIFG LAAFFLLFL GYLLE
Sbjct:  103 GQFECQNCSYVYDPKKGDQYAGVKPGLPFDMLPETFSCPGCKSDKSEFKSIKKVIAGFADNQSYGFGTNTWTEAQKSGLIFGGLAAFFLLFLSGYLLE 200          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG07_9PHAE6.030e-4673.96Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S2RF64_9STRA3.960e-3362.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4EEM1_VITBC1.120e-3158.16Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A6S9ELN9_HETAK2.830e-3157.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0GMA1_9EUKA1.140e-3058.95Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A2V3IE15_9FLOR1.500e-2957.29Rubredoxin n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
A0A7S3K377_9STRA4.830e-2954.90Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B5YMM0_THAPS1.030e-2851.46Rubredoxin, rubredoxin-type Fe4 protein (Fragment)... [more]
C1EAE7_MICCC2.910e-2851.00Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S0ZKG2_9RHOD3.540e-2857.14Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1398contigF-serratus_M_contig1398:2732..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.4e-36
Seed eggNOG ortholog2880.D7FU16
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rubredoxin
EggNOG OGs2S3MR@2759,COG1773@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.670717-CDS-F-serratus_M_contig1398:2731..30311622929376.670717-CDS-F-serratus_M_contig1398:2731..3031Fucus serratus maleCDSF-serratus_M_contig1398 2732..3031 +
1690962823.8079956-CDS-F-serratus_M_contig1398:2731..30311690962823.8079956-CDS-F-serratus_M_contig1398:2731..3031Fucus serratus maleCDSF-serratus_M_contig1398 2732..3031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1398.2854.1prot_F-serratus_M_contig1398.2854.1Fucus serratus malepolypeptideF-serratus_M_contig1398 2732..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1398.2854.1

>prot_F-serratus_M_contig1398.2854.1 ID=prot_F-serratus_M_contig1398.2854.1|Name=mRNA_F-serratus_M_contig1398.2854.1|organism=Fucus serratus male|type=polypeptide|length=100bp
RHAGDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFV
AQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE*
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mRNA from alignment at F-serratus_M_contig1398:2732..3031+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1398.2854.1 ID=mRNA_F-serratus_M_contig1398.2854.1|Name=mRNA_F-serratus_M_contig1398.2854.1|organism=Fucus serratus male|type=mRNA|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig1398:2732..3031+ (Fucus serratus male)
CGCCACGCAGGCGACTACGAATGCACCCAATGTTCATTCGTGTACAGTCC CTTCAAGGACGGCCAGGGGGCGCTCTCGGGGACGCAGTTCGAGGAACTCC CGTCGACGTGGCTGTGCCCCGTCTGCAAGTCCCCCAAGGATACCTTTGTT GCGCAGACCAAGACGATCGCGGGTTTCGAGGACAACCAGCAGTACGGACT CGGGGCTAACTCGATGACAGCGGGGCAGAAGAATTTGCTCATCTTTGGCA GCCTGGCAGCATTCTTTTTGCTCTTCCTTGGGGGATATCTTCTCGAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1398:2732..3031+

>mRNA_F-serratus_M_contig1398.2854.1 ID=mRNA_F-serratus_M_contig1398.2854.1|Name=mRNA_F-serratus_M_contig1398.2854.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1398:2732..3031+ (Fucus serratus male)
CGCCACGCAGGCGACTACGAATGCACCCAATGTTCATTCGTGTACAGTCC
CTTCAAGGACGGCCAGGGGGCGCTCTCGGGGACGCAGTTCGAGGAACTCC
CGTCGACGTGGCTGTGCCCCGTCTGCAAGTCCCCCAAGGATACCTTTGTT
GCGCAGACCAAGACGATCGCGGGTTTCGAGGACAACCAGCAGTACGGACT
CGGGGCTAACTCGATGACAGCGGGGCAGAAGAATTTGCTCATCTTTGGCA
GCCTGGCAGCATTCTTTTTGCTCTTCCTTGGGGGATATCTTCTCGAGTAG
CGCCACGCAGGCGACTACGAATGCACCCAATGTTCATTCGTGTACAGTCC
CTTCAAGGACGGCCAGGGGGCGCTCTCGGGGACGCAGTTCGAGGAACTCC
CGTCGACGTGGCTGTGCCCCGTCTGCAAGTCCCCCAAGGATACCTTTGTT
GCGCAGACCAAGACGATCGCGGGTTTCGAGGACAACCAGCAGTACGGACT
CGGGGCTAACTCGATGACAGCGGGGCAGAAGAATTTGCTCATCTTTGGCA
GCCTGGCAGCATTCTTTTTGCTCTTCCTTGGGGGATATCTTCTCGAGTAG
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