mRNA_F-serratus_M_contig1398.2854.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A6H5JG07_9PHAE (Rubredoxin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG07_9PHAE) HSP 1 Score: 156 bits (394), Expect = 6.030e-46 Identity = 71/96 (73.96%), Postives = 78/96 (81.25%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
GD+EC QC FVY P GQGAL GTQF++LPSTW+CPVCK+PKDTF AQTKTIAGFEDN YG GAN MT QKNLLIFG L AFF+LFL GY L+
Sbjct: 135 GDHECLQCGFVYKPENAGQGALPGTQFDDLPSTWICPVCKAPKDTFFAQTKTIAGFEDNANYGFGANQMTGSQKNLLIFGGLFAFFVLFLAGYALD 230
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S2RF64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF64_9STRA) HSP 1 Score: 120 bits (302), Expect = 3.960e-33 Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
G EC C +VY A GTQF ELPS+W CP C S K F QT+T+AGFE+N QYG G N+MTAG+KN LIFGSLAAFF+LFLGGYLLE
Sbjct: 51 GRAECKTCGYVYDE------ATEGTQFVELPSSWRCPQCLSQKGFFEVQTRTLAGFEENLQYGFGTNTMTAGEKNNLIFGSLAAFFVLFLGGYLLE 140
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A0G4EEM1_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EEM1_VITBC) HSP 1 Score: 120 bits (300), Expect = 1.120e-31 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQGAL--SGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
GDY+C C +VY +K G G + T++E++P+ W CP CK+PK+ F T+TIAGF DNQ YG+G N++TAGQKN+LIFGSL FFLLFL GYLLE
Sbjct: 142 GDYQCRNCGYVYR-WKQGDGIYLKANTKWEDVPTWWKCPNCKAPKNYFNPITRTIAGFADNQGYGIGTNTLTAGQKNVLIFGSLGLFFLLFLSGYLLE 238
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A6S9ELN9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ELN9_HETAK) HSP 1 Score: 118 bits (295), Expect = 2.830e-31 Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
G+++C+QC++VY P + + L GT F +LP+ + CP C +PK F A T TIAGFEDNQ YG G NSMT QKN LIFG LA FF LFL GYLL+
Sbjct: 111 GEFQCSQCNYVYKPDEGERNILPGTSFADLPTGYQCPECGAPKSFFDALTVTIAGFEDNQGYGFGTNSMTGDQKNTLIFGGLAFFFALFLSGYLLD 206
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S0GMA1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GMA1_9EUKA) HSP 1 Score: 117 bits (293), Expect = 1.140e-30 Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQGAL--SGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGY 288
GD+EC +C FVY +L GT FE+LP WLCPVC PKDTF Q K +AGF +NQ YG G NS+T GQK+ LI+GSLAAFF LFL GY
Sbjct: 137 GDFECVECQFVYKAENGDPESLIAKGTAFEDLPEDWLCPVCGQPKDTFEEQGKIVAGFAENQGYGFGTNSLTEGQKSALIYGSLAAFFALFLLGY 231
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A2V3IE15_9FLOR (Rubredoxin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE15_9FLOR) HSP 1 Score: 114 bits (284), Expect = 1.500e-29 Identity = 55/96 (57.29%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQ---GALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGY 288
G YEC C + Y P K G+ G GT FE+LP+T+ CPVC++PK F+++ K IAGF DNQ YG G NSMTAGQKNLLIFG L LL L GY
Sbjct: 115 GRYECPACGYTYEP-KQGEKQAGIQPGTPFEQLPATYFCPVCRTPKSRFISKKKVIAGFADNQSYGFGTNSMTAGQKNLLIFGGLVFAALLLLSGY 209
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S3K377_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K377_9STRA) HSP 1 Score: 112 bits (279), Expect = 4.830e-29 Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 1
Query: 1 RHAGDYECTQCSFVYSPFKDGQ---GALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
+ G Y C CS+ Y P + GQ G GT F +LP++W CP C++ KD F QT TIAGF +NQ YGLG N+MT K+ LIFGSLAAFF+LF+GGYLL
Sbjct: 90 QETGIYICKVCSYKYDP-EVGQPIGGIQPGTPFSQLPASWRCPTCRAQKDAFEPQTLTIAGFAENQGYGLGGNAMTEESKSTLIFGSLAAFFVLFMGGYLLN 190
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: B5YMM0_THAPS (Rubredoxin, rubredoxin-type Fe4 protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMM0_THAPS) HSP 1 Score: 109 bits (273), Expect = 1.030e-28 Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 1 RHAGDYECTQCSFVYSPFKDGQGALSG-----TQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLL 294
R G ++C+ C + Y P K + G T FEELPS W CP C++ KD+F +TI GFE NQ YG G N+MT G+KN LI+G LAAFFLLF+GGY L
Sbjct: 39 RSTGIHKCSNCDWEYDPAKGDSFLIGGMIKPDTPFEELPSNWRCPTCRASKDSFREVVETIPGFEVNQGYGFGTNAMTTGEKNALIWGGLAAFFLLFIGGYAL 141
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: C1EAE7_MICCC (Rubredoxin-like domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EAE7_MICCC) HSP 1 Score: 109 bits (273), Expect = 2.910e-28 Identity = 51/100 (51.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 7 AGDYECTQCSFVYSPFKDGQG---ALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
+G+++C C +VY+P K+G SGT F++LP WLCP C + TF + K +AGFE NQ YG G NSM+ G+K++LI+G+LA FF LFLGGYLL+
Sbjct: 81 SGEHQCQSCLYVYNP-KNGDPDYPVASGTAFKDLPEDWLCPTCGAAPKTFKSLGKEVAGFEQNQGYGFGTNSMSGGEKSILIYGALALFFALFLGGYLLD 179
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Match: A0A7S0ZKG2_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKG2_9RHOD) HSP 1 Score: 110 bits (274), Expect = 3.540e-28 Identity = 56/98 (57.14%), Postives = 63/98 (64.29%), Query Frame = 1
Query: 10 GDYECTQCSFVYSPFKDGQ--GALSGTQFEELPSTWLCPVCKSPKDTFVAQTKTIAGFEDNQQYGLGANSMTAGQKNLLIFGSLAAFFLLFLGGYLLE 297
G +EC CS+VY P K Q G G F+ LP T+ CP CKS K F + K IAGF DNQ YG G N+ T QK+ LIFG LAAFFLLFL GYLLE
Sbjct: 103 GQFECQNCSYVYDPKKGDQYAGVKPGLPFDMLPETFSCPGCKSDKSEFKSIKKVIAGFADNQSYGFGTNTWTEAQKSGLIFGGLAAFFLLFLSGYLLE 200 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1398.2854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1398.2854.1 >prot_F-serratus_M_contig1398.2854.1 ID=prot_F-serratus_M_contig1398.2854.1|Name=mRNA_F-serratus_M_contig1398.2854.1|organism=Fucus serratus male|type=polypeptide|length=100bp RHAGDYECTQCSFVYSPFKDGQGALSGTQFEELPSTWLCPVCKSPKDTFVback to top mRNA from alignment at F-serratus_M_contig1398:2732..3031+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1398.2854.1 ID=mRNA_F-serratus_M_contig1398.2854.1|Name=mRNA_F-serratus_M_contig1398.2854.1|organism=Fucus serratus male|type=mRNA|length=300bp|location=Sequence derived from alignment at F-serratus_M_contig1398:2732..3031+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1398:2732..3031+ >mRNA_F-serratus_M_contig1398.2854.1 ID=mRNA_F-serratus_M_contig1398.2854.1|Name=mRNA_F-serratus_M_contig1398.2854.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1398:2732..3031+ (Fucus serratus male)back to top |