mRNA_F-serratus_M_contig136.2653.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig136.2653.1
Unique NamemRNA_F-serratus_M_contig136.2653.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.690e-23
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   27 TRWSCKEDLLDDNCNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            +RWSC E L D  C I + FEEPQDIVRI I FYKGDER R LK+  +      I S+G +++ E +++NT ET  L++E L L  DEWISI+EV+FMV
Sbjct:   49 SRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFMV 147          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.310e-16
Identity = 46/105 (43.81%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   18 DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIES-TGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            D  +RWSC E+++ D   C I F F+ PQDI  + +AF+KGDERTR LKV +NG      ES  G T     F +      T+ +E +G+  D+WIS+ EV+FMV
Sbjct:   16 DTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST--FNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMV 118          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.560e-15
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 3
Query:    3 NTRDG---DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            NTRDG   +I +RWSC   L+DD   C I F F EPQ IV I +AF+KG+ERTR L+V +NG   +  ES    A      +   + +T+ LE + L  DEWIS+ EV   V
Sbjct:  125 NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYAD-ATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFV 235          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 9.260e-15
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   18 DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIES-TGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            D  +RWSC E+++ D   C I F F+ PQDI  + +AF+KGDERTR LKV +NG      ES  G T     F +      T+T+E +G+  D+WIS+ EV+FMV
Sbjct:  298 DTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST--FNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMV 400          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.980e-14
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 3
Query:    3 NTRDG---DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            NTRDG   +I +RWSC   L+DD   C I F F EPQ IV I +AF+KG+ERTR L+V +NG   +  ES    A      +   + +T+ LE + L  DEWIS+ EV   V
Sbjct:  376 NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYAD-ATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFV 486          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.190e-13
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   18 DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIES-TGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            D+ +RWSC ED++ D   C I F F  PQ++ ++ + F+KG+ERTR LKV +NG      +S  G       F++   +  T+TLE LGL  DEWIS+ EV FMV
Sbjct:  237 DVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSY--FDVIAYDVHTVTLESLGLDTDEWISLLEVIFMV 339          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.690e-13
Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 3
Query:    3 NTRDG---DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            NTRDG   +I +RWSC   L+DD   C I F F EPQ I+ I +AF+KG+ERTR L+V +NG   +  ES    A      +   + +T+ LE + L  DEWIS+ EV   V
Sbjct:  403 NTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYAD-ATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFV 513          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.610e-13
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 3
Query:    3 NTRDG---DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            N RDG   +I +RWSC   LLDD   C I F F EPQ+IV I +AF+KG+ER R L+V +NG   +  ES   +       +   E  T+ LE + L  +EWIS+ EV   V
Sbjct:  194 NARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADST-FNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFV 304          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.810e-13
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 3
Query:    3 NTRDG---DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            NTRDG   +I +RWSC   L+ D   C I F F EPQ IV I +AF+KG++RTR L V +NG   +  ES   +       +   E +T+ LE   L  DEWIS+ EV   V
Sbjct:   61 NTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDST-FNTLGVTANEASTVMLESTALLSDEWISLIEVLIFV 171          
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.380e-12
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 3
Query:    3 NTRDG---DISTRWSCKEDLLDDN--CNIMFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELEDFELNTGETTTLTLEGLGLSGDEWISISEVQFMV 323
            NTRDG   DI +RWSC   L+ D   C I F F EPQ++V I +AF+KG+ERTR L V +NG   +  ES   +       +   E +T+ LE + L  DEWIS+ EV   V
Sbjct:  499 NTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADST-FNTLGVTATEASTVMLESVALLSDEWISLLEVLIFV 609          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig136.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G122_ECTSI3.690e-2353.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCQ5_ECTSI2.310e-1643.81Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI8.560e-1544.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8U9_9PHAE9.260e-1544.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI7.980e-1444.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFX1_9PHAE2.190e-1343.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3F4_ECTSI3.690e-1343.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI9.610e-1342.86LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI77_ECTSI9.810e-1342.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI4.380e-1243.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig136contigF-serratus_M_contig136:71405..72732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1090
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig136.2653.1prot_F-serratus_M_contig136.2653.1Fucus serratus malepolypeptideF-serratus_M_contig136 72166..72658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.4754019-UTR-F-serratus_M_contig136:71404..721651622929341.4754019-UTR-F-serratus_M_contig136:71404..72165Fucus serratus maleUTRF-serratus_M_contig136 71405..72165 -
1690962806.5220206-UTR-F-serratus_M_contig136:71404..721651690962806.5220206-UTR-F-serratus_M_contig136:71404..72165Fucus serratus maleUTRF-serratus_M_contig136 71405..72165 -
1622929341.5317516-UTR-F-serratus_M_contig136:72658..727321622929341.5317516-UTR-F-serratus_M_contig136:72658..72732Fucus serratus maleUTRF-serratus_M_contig136 72659..72732 -
1690962806.546951-UTR-F-serratus_M_contig136:72658..727321690962806.546951-UTR-F-serratus_M_contig136:72658..72732Fucus serratus maleUTRF-serratus_M_contig136 72659..72732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.4888368-CDS-F-serratus_M_contig136:72165..721861622929341.4888368-CDS-F-serratus_M_contig136:72165..72186Fucus serratus maleCDSF-serratus_M_contig136 72166..72186 -
1690962806.5306609-CDS-F-serratus_M_contig136:72165..721861690962806.5306609-CDS-F-serratus_M_contig136:72165..72186Fucus serratus maleCDSF-serratus_M_contig136 72166..72186 -
1622929341.5139208-CDS-F-serratus_M_contig136:72424..726581622929341.5139208-CDS-F-serratus_M_contig136:72424..72658Fucus serratus maleCDSF-serratus_M_contig136 72425..72658 -
1690962806.538496-CDS-F-serratus_M_contig136:72424..726581690962806.538496-CDS-F-serratus_M_contig136:72424..72658Fucus serratus maleCDSF-serratus_M_contig136 72425..72658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig136.2653.1

>prot_F-serratus_M_contig136.2653.1 ID=prot_F-serratus_M_contig136.2653.1|Name=mRNA_F-serratus_M_contig136.2653.1|organism=Fucus serratus male|type=polypeptide|length=85bp
MFIFEEPQDIVRILIAFYKGDERTRKLKVILNGSSRYVIESTGKTAELED
FELNTGETTTLTLEGLGLSGDEWISISEVQFMVL*
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mRNA from alignment at F-serratus_M_contig136:71405..72732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig136.2653.1 ID=mRNA_F-serratus_M_contig136.2653.1|Name=mRNA_F-serratus_M_contig136.2653.1|organism=Fucus serratus male|type=mRNA|length=1328bp|location=Sequence derived from alignment at F-serratus_M_contig136:71405..72732- (Fucus serratus male)
GTAATACCCGCGACGGGGACATTTCCACGCGTTGGTCGTGCAAAGAGGAC CTGCTCGACGATAACTGCAATATAATGTTCATATTTGAGGAGCCTCAGGA CATCGTGCGCATACTCATCGCATTCTACAAAGGCGACGAGAGGACTCGCA AACTCAAAGTCATTCTAAATGGTTCCTCGCGATATGTTATAGAGTCGACC GGCAAGACTGCCGAACTTGAAGACTTTGAACTCAATACGGGCGAGACTAC GACGCTCACCTTGGAGGGTCTTGGCCTTTCCGGGGACGAGTGGATCAGTA TCTCAGAGGTAAGCACACTGTTGTGTCCGCTTGGCATGAACCTATGGTAT AAAACCAGGAAATATACAATGTTTGAGAGTATGCAGAGAATTTGCACGGC GTTTTCTTCACGCCGATGTTGCTGCTGTAAACGATGCGTATACAGAAAAG GTGGAACTCGTTTTTAGTCTCGATGTGGCTAGAAACGATGATATTTAACT CACGCTTACATTCCTGAAACCCTTCCACGCTTCGCTTCATTCATAGGTCC AGTTCATGGTGCTGTGATGAACAACCGTTGTAAGGCCTCCATTTTCGAAA AGGGGCGCTTCTAGCCAACCGCATTCAAGGCTTCGAGACATTTTTGTTTC AAAGGTGCACATCCCGGAGCTATTTTGCAGAGGCCACCAGCAGCGTTTGA AGCGACCACTATGTAAAAGCTGCTCTCTTGTCGACGGAAAGTTGGCAAAC ATATTCGATACAGATCCATTGATATGCATGGTCAGGGGGAAACTTCTACT ACATTACAATGACGTGCAAGACACACTAGATAATATGCATGCACAAAACA GCCCTTCACATCTCCAGCCAATACTCGTCACACTAAGGTGGAATATTTCT TAATCTTTCAACGGTGTTGAGACAACAGTAGGGGGAAAGCTGAAGTGGGT CGGTTTCATTGGTGTTTTCGAATTCAGTTGAAAACACGCGATCATTTGAC ATATTCTGTTGAATTAAAATTGAGCAGTTCATGAGGAAGGTCACCTTGTC AATGTCGGTTTGATGTGGGCTGGTTAGCACAGGGGAAAATGGGCTGCCTC TGTACTTATAGCGGGACTTCGTGTTTTCAGAAGCAAATGCGATCGACGTT GAAGCGATATGCTCAAGATTGCTTTTGCTGTCGATAATGCCTCATTTTCA CTAGATTTAAGGCAATACATGCGATGACAGCGGCTCTCGGATCTTCTTGT TATCTGGTAGGCACATCGACGTAAAAAGGCATCTGGTCCCAGTGTAGTGG GAGAGAGGCAGGGGAGACATGTAATTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig136:71405..72732-

>mRNA_F-serratus_M_contig136.2653.1 ID=mRNA_F-serratus_M_contig136.2653.1|Name=mRNA_F-serratus_M_contig136.2653.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig136:71405..72732- (Fucus serratus male)
ATGTTCATATTTGAGGAGCCTCAGGACATCGTGCGCATACTCATCGCATT
CTACAAAGGCGACGAGAGGACTCGCAAACTCAAAGTCATTCTAAATGGTT
CCTCGCGATATGTTATAGAGTCGACCGGCAAGACTGCCGAACTTGAAGAC
TTTGAACTCAATACGGGCGAGACTACGACGCTCACCTTGGAGGGTCTTGG
CCTTTCCGGGGACGAGTGGATCAGTATCTCAGAGATGTTCATATTTGAGG
AGCCTCAGGACATCGTGCGCATACTCATCGCATTCTACAAAGGCGACGAG
AGGACTCGCAAACTCAAAGTCATTCTAAATGGTTCCTCGCGATATGTTAT
AGAGTCGACCGGCAAGACTGCCGAACTTGAAGACTTTGAACTCAATACGG
GCGAGACTACGACGCTCACCTTGGAGGGTCTTGGCCTTTCCGGGGACGAG
TGGATCAGTATCTCAGAGGTCCAGTTCATGGTGCTGTGAGTCCAGTTCAT
GGTGCTGTGA
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