mRNA_F-serratus_M_contig1327.2427.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1327.2427.1
Unique NamemRNA_F-serratus_M_contig1327.2427.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1327.2427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1327contigF-serratus_M_contig1327:97410..104934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1327.2427.1prot_F-serratus_M_contig1327.2427.1Fucus serratus malepolypeptideF-serratus_M_contig1327 97430..104934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.2693965-UTR-F-serratus_M_contig1327:97409..974291622929296.2693965-UTR-F-serratus_M_contig1327:97409..97429Fucus serratus maleUTRF-serratus_M_contig1327 97410..97429 +
1690962787.8649008-UTR-F-serratus_M_contig1327:97409..974291690962787.8649008-UTR-F-serratus_M_contig1327:97409..97429Fucus serratus maleUTRF-serratus_M_contig1327 97410..97429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929296.2871552-CDS-F-serratus_M_contig1327:97429..976161622929296.2871552-CDS-F-serratus_M_contig1327:97429..97616Fucus serratus maleCDSF-serratus_M_contig1327 97430..97616 +
1690962787.8738322-CDS-F-serratus_M_contig1327:97429..976161690962787.8738322-CDS-F-serratus_M_contig1327:97429..97616Fucus serratus maleCDSF-serratus_M_contig1327 97430..97616 +
1622929296.3056977-CDS-F-serratus_M_contig1327:104794..1049341622929296.3056977-CDS-F-serratus_M_contig1327:104794..104934Fucus serratus maleCDSF-serratus_M_contig1327 104795..104934 +
1690962787.881619-CDS-F-serratus_M_contig1327:104794..1049341690962787.881619-CDS-F-serratus_M_contig1327:104794..104934Fucus serratus maleCDSF-serratus_M_contig1327 104795..104934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1327.2427.1

>prot_F-serratus_M_contig1327.2427.1 ID=prot_F-serratus_M_contig1327.2427.1|Name=mRNA_F-serratus_M_contig1327.2427.1|organism=Fucus serratus male|type=polypeptide|length=109bp
MQTREHSSCSAVYVPSSRHPNHVGTEGAGGAATMIPAQGVRVAPFLPSLL
RMVNNGDMIFDDGKLIFDDPDSFVTTVLPRYFPRINFASFRRQLKNFGFQ
KALDQGNRK
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mRNA from alignment at F-serratus_M_contig1327:97410..104934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1327.2427.1 ID=mRNA_F-serratus_M_contig1327.2427.1|Name=mRNA_F-serratus_M_contig1327.2427.1|organism=Fucus serratus male|type=mRNA|length=7525bp|location=Sequence derived from alignment at F-serratus_M_contig1327:97410..104934+ (Fucus serratus male)
ACACAGTTCGTGCGGTGACAATGCAGACGCGAGAGCACTCATCGTGCTCG
GCGGTTTACGTGCCATCATCACGTCATCCCAACCATGTTGGTACAGAAGG
AGCTGGCGGTGCTGCTACGATGATCCCTGCTCAGGGGGTACGAGTCGCTC
CCTTTCTCCCTTCCTTGCTCCGTATGGTGAACAACGGAGACATGATCTTT
GATGACGGTGAGCAAAATGATATAACTTCTACTACTGTCTACGACGTGGT
AGAAGAGACTTTTGATTGAGCAAAAGGGGTCAATCATGGTAGTTGTCGGA
CGTGAGTCAGTAGTTCAATGTTTTGGCCTACGACACCGACATGGGACGAA
ATAGGTGTGCGTCTGGTGTCATATGGCACCGAGCCCACGCTACAGACAAC
CATACTTTGCTACAGCAGTCACCCCACGGACAGTTGTAATCGGTTCTCTA
TTCTGAAAATACTGACTACGACAAATCTCAAAATTGCAAAATTCTAAGTC
TAGGTTTCTTTATTGTTCCCATGTACTACTGTTTTGTACTTTCAACAATA
TTGGTGTCTACATACGACATCCATACTCGTATCATGTGTGTACCTGTACG
CAGTATAATAGCCAGACTGTGGGCACCAACCGGATGTATGGTTGCCAATC
CTGTTCGCGTGGTAGCTGAACAGGAAAAATTGATTGTTCTCCATCCCTGA
GAAATTGGTCTCGTGAGAAAGGTTCGACCGTACCATCTAGAGCCAGCTTG
TTCATTCTCTACAACCAGGCTGAAATCGGTATCACGCCCGATTGGTCCAG
TACGTAACCACGTACACCTAGCCTAGCTCCGATGCTTTGAACATGCCCAC
TTCACACCAATAATAGTATAGTGGGTGTAGGAAAAGAGAGGCGCACATTA
ATTGGCCAATGGTAATGCAAAGGCATCACCCGTTAGTGGAACTACCTTAA
GGTCTACTGGCTCCGAGCCGGCGGACTCTCGGCAATGAACGCCAACGGTA
CACAATTACGTGACACGATAAACTCGGGACTGGTCCGATGGCGTATGGCG
GTTTTCCTTTATATAAACAATAAAAAATGGCCGCACCGAAAATCGGGAGG
AATCCCGTAAGTAAGCAGCACCAGATTCAGCCTGAGTATGGAGATTGAGC
AGGCTGACGCGGGACAGGACTGCCGAACCCGCCGCGCGAGACCAAATTCT
CAGGCGAAATATTATTTTTCCCTGTTTAGCTGACCACGAGCAGGGTTGGC
AACCTCACCGGGTTGATTCACACTCTGCGACAATGTGATGACTATACATA
ACAGTCCTAAAGTTGTGTATTCGGTTCTAAAAGCCCGAATTTGTTTTCTG
GCTTCCGTACCGGAAAGCGTGAGAACGTCAGACATTATGCTGTGTAAGAG
TCTCCTCAGCTTGCATCGCGATAAAAAAAATCATAACGCGAAAACCGGGG
AGAGATAGGAAGATCCTTCGCGACCACAGACAGGATGGCAGCGTTGCAGT
AGGTGGGATTATAGTAACCTAGCACGTTGAGGCATTGACTTGGCCGTAAC
GAAGATACAAACTACAGAAAACTCGCCAGTATTACTATTAATACTGCTGC
TACTGCTGTGTTGCAGCCTGCGATTGCGCTGTTTGTTGCCATCCCATTTA
TTCTGGACGTCAGACTTGTGGACGCACCAGCCGGGGTCACACAGAGGATT
TCTCAACTTTCCTTCTGCGGTGCTTGCCATAACTTCTAACGTGAGAAGGA
GATTCAGCCGTCCCTTTCCCTCGTCGACCATAAAGTCGATTTTTTTGTAT
GCCCACAAAATAATGGCTCTCCATTTGTTGGGTTTGATGTGAGGAAAAAT
CCCAGTTCGTGTGACAGCGCCAAGATTCGAACCCACGTCCCAACGTCAGA
AGGTTTCGAGGTTACCAACTGAACCACCGGGGCCCGCCACGAAAACCCGC
GAGTTTACAAGAACGCATGATTCCTTCAAGTTGTTGACGGTACATTAGAT
GATGCCCGCTTCATACCAATGGTGGGTGTGGGGAAATACTAATTGACTAA
GGCGACCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAGGTTCATTAG
CCCTGTACCGGCGGACTCTGTACGCAATTGCGTGACCCGATAAACTCGGG
ACTGACCCGATGGCGTATGGTTGGTGGTTTTAAATAGATAGATGGACGAC
GGCGCCGAACTCGGGAGGAATTCCGTAAGTAAGCACCGAATTCAGCCCGA
GTTTGGAGATGAGCAGGCTGACGCGGAACGGGACTGCCGAACCCGTCTCG
CGAGACCAAATTCTCAGGCGCGAACGCGGATTGGGAAATATCAGGGCTAT
TCGCGGTAAAAGTCGGGACGGGAAAAAAAGTGGTCGGGAACGGTACGGTA
CGGTACGGTACGGGAACGGGAACGGTTGCGATATTTCCGTTCCCGACGGA
TGTTTCCCGACCTCTCCCGTTACTGATTTCTGTTTCCGCGTTTCCCGTAC
CACCGCAAGATGAACTGTTCCCGTCCCACTTCCCGTCCCACTATCTGCCC
ATTCGCTTCCCATCCCGTTCCCGATTTTGACACTCTTTCTCCCGTCCCAC
TTCCCTGGTTGTCATTAGTGTTTTTAGTGTTGTTCATCTCGCCGTTACTT
TCAACATGCCCACTTCATACGACATGACCAATAGTGGGTGTGGGGAAGAG
AGGCGTATATTAATTGGTCCATAGTGACTTGCTAAGGCAGCACTCGTTCG
GAACTACCTTGAGATTTACTGGCCCTGTGCCGATGGACTCTCGGCAGTGA
ACGCCATCGGTACGCAATATTGCGTGACCCGATAAACTTGGGACTTACCC
GATGGCGTATGGCGGTTTAATATAAATATATGGACGCCGCCGCGGAACTC
GGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGA
GCAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAGACCAAATT
CTCAGGCACGAACGCGGACAGGGGAATATTCTTTTTCCCTGTTCAGCTGA
CCACAAGCAGGATTGGCAACCTTCCCAGGTTGATCCAAACTCTTGCTATA
TGTGTGACCATACATTACTATGGTCGTTCGGACGTTAAAAAAAAAAAAGC
GGATGTGGCAGGTTGGCAACTGGTGAAATGTACAAGCACTTATTTCGTTT
CGTTTATAGATACGATAAAAAAATGTAATTATTTACGGAGGATTTGATCA
TTTTGCAGGACGGGGGGTCGGCAAATACCTTCATACAGTATCTGTCGAAG
GCAGCCGATAATATTAGTTGATGCATGTCACTTTCTTTTTCGCGATTGTG
TGTGAAGTGTTTTCAGTTTCGGGAGGTTTTCTGATACGAAGTTGAAACAA
CAAAATGAAGCACATGTGTACTTATTTTTTTACTGAAGTACTTCGTATTA
TTTTGTTTGCCTCTCACAAACGAACCACTGGAAATTATTCTTCAAAAATA
CATAATATGGAGTCTCGTATACCGTAACCCTGGTACAATATATCTATACA
CATGCCGTAATATGTGTTGCCATTATATTGTTCTTGCTGGATGTTCACGT
ACGTGTACTGCCGTTGGTGGGACCTTGGATTCCTGAGTCACACATACAAG
GTACATAAAAAGCAGCAGTAGTTGTGATGAAAGCCACGAAACGATTTTCT
GTTCCTCCCGACATGCAGACGTGTTTCCCGACTTGTTTCCCAACTTGTTT
CCCGACTTTTCCCCGACTTTTCCCGCATTGCTTCGCAAGCCGATCTACAG
CAGTACCGTACATTACAGACAGCGACCCTCGAGTTGTATAAAATATATGT
GTCATGTGTGCTGTGACGCGGCCCCCCGTGTTTCAAGTCTACCTCGAGCC
TGACTTTTTCCAAAGTTCAGTACCCGTCGCTTTTTGGGGTATCGGCGTCT
CCAAAGTTCAACACCACGTTGTGTCCCCATCACCAGCTGGGAGAGGTAAC
GGCTCCCACTCGCCGTGGGACCGTTGGCGTGGGCCATGCCAGCCAGCAGA
AGTTGTGTGTATGGTGTGGCGAGTCTGTCTACGAGCTGCTGTTGCACTGC
TGTGCTCTGGCCTCTGGCGTGTGGCAAAAGCCTTCGATAGGATGAACACC
CGATATATTGATTTTGATTTTATTTAAAATAAGTCCCTGGGGACTTCTTT
GGTTTGACAGCTGACAATCAGAGCCCAATTTTGATTTTGATTTGTTCCGA
TTTTGATTTTCGGAACATCGTTAAGACTCGGCCTTAGAGCAGGATTGGCA
ATCTTACCCGGTTGATCCACCATCTTGCCATACGTGTTACCATACGTACA
TGATGATGTACGCTGGTACGGGTCATACTGCAATACCTGGTGCAGTACAC
AGTACACTGCGACTGACATGAATGTGATACACGGGGGAACGAAAAGTGCT
TTCTGGTCGATGCTACGCTATCAAGTGCGGCGTTGTGTGTCGCCTCAGTT
CCAAAGGTTTTGAGTTACAACAGTAGTATTAATAGGAGTACTCTCGCCTC
AACTTTGGCACTGATTCTGCTGTTTTTATTTCGTCATATTTTTTTTGGCA
CGGCGTAATAAAAGTATTCAAAGTGTGAAAAGAAGATGATTATTTTTTGG
ATTCCATTATTGAACTCCGTAAACGATAGACAAGCCACTCTTGAGCACGG
CCGAGGCACAATATTTATAGTATAATATAATCCTAGCTCTATACTCGCCG
TTACTTTCAACATGCCCACTTCATAACCAATAGTGGGTGTGGGAAAGAAA
GGCGTATATTAATTGGTCCATAGTGACCTGCGAAGGCAGCACTCGTTCGA
AACTAGCTTGAGGTATGCTGGCCCTGTGCCGGCGGATTCTCGGCAGTGAA
CGCCATCGGTACGCAATTGCGTGACCCGATTTACTCGGGACTGACCCGAT
GGCGTATGGCGGTTTAATATTAATATATGGACGCCGCCGCGGAACTCGGG
AGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCA
GGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAGACCAAATTCCC
AGGCGCGAACGCGGACAGGGGAATATTATTTTCTCTGTTTAGCTGACCAC
GAGCAGGATTGGCAACCTTAACAGGTTGATCCATACTCTTGCTATATGTG
TGACCATTGATTGATTGATTGAATTCTCACATAAGCTGATGTCAAAAAAC
CCAGCCCGTGGTCACAAGGTAGAAAACACCATTCGGAAGGAAAGAACGTA
CGACGTACTCTCCATACAAAGAGAAAGCGGAAATGGTACAAGATCATACA
CCTGTACTAAAACATGTGTCAGATAGACACACCTTCTACTAACTATTAAC
CTTGGGCCGGTGTAGTAGCGCCTTGTTATTTCATTGCGCTCCTGTGTTGC
TGTGCTCCGGCTGGCGATTTGAGTGTAGTACAGTGTACAGATTAAAACGG
TGGGTTTCTGTTTACCTTATATCGTGGGGAAACATGACGTGATTGATTCC
CATGTAAACTACAAATATTTAGGGGGGGGGACGGATTCTAGAGAAAAATA
TGAACGCCTCCAAATCTTCCGAGCATCCATTCCAAACAAACAAACTTTTC
AATCCAGTGCAAGAGAGGCGCATATTATTTGATTCATGGTGACTTGCCAA
GGCAACACCCGTTTGGAACTACCTTAAGGACTGCTGGCCCTGTGCCGTGG
GCCTCTCGACAGTGAACGCCATCAGTACGCAATTGCGTGGCCCGATAAAC
TCGGGACTGACCCGATCGTGTATGGTGGTTTTAAACAAATATTGGACGCC
GCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCCGATTTAGCCTAA
GTATGGAGATGACCAGGCTGGCGCGAGACGGGACTGTCGAACCCATCTCG
CGAGACCAATTCCCAGACGCGGACGCGGACAGGAAAATATCAATTTTCTC
TGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCTATA
TACTCTTGCTATATGTGATGATGACCAACATACTACTCTAATGCTACTGT
TTAAAGAAAAATCTGAACTAAAGACCTTCTGAGTGTTGTATTTTAGTTGG
ATGCTCGGAATGTAAGGTTTGCATTCAAATAATACTGTCTCTGCAATGCC
TTCAGATGTTTTTGCCAATTGTGTCTGTACATCATCAAACCGCCGGTATT
TTCAACATGCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGCA
TATTAATTGGTCCATGGTGGCCTGCCAAGGCAGCACCCGTTTGGAACCAC
CTTGAGGACTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCAT
CGGTACGCAATTGCGTGACCCCATAACTCGGGACTGACCCGATGGCGTAT
GGCGGCTTGAATAAATAAATGGATGCCGCCGCGGAACTCGGGAGGAATCC
CGTACGTAAGCACCATATTCAGCCTGAGAGATGAGCAGGTTGACTCGGGA
CGGTACTGCCGAAACCGTCTCGCGAAACCAAATTCTCAGGCGCGAACGGG
GACAGGGAAATATTCATTTTCCCTGTTCAGCTGACCGCGAGCAGGATTGG
CAACCTTACCAGGTTGATCTTTCTCTTACTATAGGCTGTGATTATCATAC
TTCATACATACATATTGCATCAACATCAAGCAATCCGAGCCTGTCGCCCT
CGTAATCCTAAGCTACTAGAGCTATGCATGAACAGTTTCGGTCCTCCCAA
CTGGGGGTAATGATTGTTACTGCCACGGTATCAGGCGACTGGCGCCTGTT
GTGTACCATCGAAATGAAGTTTATTTTGCAATTCCATCCCTTCGACGATC
CTCACGGCCGCGCAAGACGCCACCGCCCGTTATAGCCCCCGATTCCATTG
ATCCCCGTTTGTAAGCATCGCATCTTTTCAAGCACAAGTGTATGTCCGAT
ACGCAAAACTTCTCATGTCACAAAAAAAAAAAAAAACGCACACCTGGTGA
CCAACTGAGACTGCTCAAGAATGATAATTTTAAAAGCCGTACTCCACAGA
TTTCATTAGATTTTTCTAAAAAATTCTTGTGGGAAAAATCTGGGCTACTT
TTTTCGTCATTTGTTGAAGAATGTTGAATATATCTCACCTGTGCAGCCAA
AATCCTGGGCTAAAGTTGAGGCTCTTGTGTCTCTTGTGTATGACCTCACA
CGCCTACGTGATGTCGAAAACCTCGTAGCGCCACTTCGACTCGCGCCCCC
TTTTGATCCCTTATACCAAATACAAATATTATACTGCGGTTTACTTTACC
GTATTATTTTGTTCACCCCTCTCCCTTCCCGGCAGGAAAGCTGATCTTTG
ATGATCCAGACTCGTTCGTCACCACGGTGCTGCCGCGGTACTTCCCACGC
ATCAATTTTGCATCGTTCAGGCGGCAGCTCAAAAACTTCGGGTTTCAGAA
AGCGTTGGACCAGGGCAATCGGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1327:97410..104934+

>mRNA_F-serratus_M_contig1327.2427.1 ID=mRNA_F-serratus_M_contig1327.2427.1|Name=mRNA_F-serratus_M_contig1327.2427.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig1327:97410..104934+ (Fucus serratus male)
ATGCAGACGCGAGAGCACTCATCGTGCTCGGCGGTTTACGTGCCATCATC
ACGTCATCCCAACCATGTTGGTACAGAAGGAGCTGGCGGTGCTGCTACGA
TGATCCCTGCTCAGGGGGTACGAGTCGCTCCCTTTCTCCCTTCCTTGCTC
CGTATGGTGAACAACGGAGACATGATCTTTGATGACGATGCAGACGCGAG
AGCACTCATCGTGCTCGGCGGTTTACGTGCCATCATCACGTCATCCCAAC
CATGTTGGTACAGAAGGAGCTGGCGGTGCTGCTACGATGATCCCTGCTCA
GGGGGTACGAGTCGCTCCCTTTCTCCCTTCCTTGCTCCGTATGGTGAACA
ACGGAGACATGATCTTTGATGACGGAAAGCTGATCTTTGATGATCCAGAC
TCGTTCGTCACCACGGTGCTGCCGCGGTACTTCCCACGCATCAATTTTGC
ATCGTTCAGGCGGCAGCTCAAAAACTTCGGGTTTCAGAAAGCGTTGGACC
AGGGCAATCGGAAGGAAAGCTGATCTTTGATGATCCAGACTCGTTCGTCA
CCACGGTGCTGCCGCGGTACTTCCCACGCATCAATTTTGCATCGTTCAGG
CGGCAGCTCAAAAACTTCGGGTTTCAGAAAGCGTTGGACCAGGGCAATCG
GAAG
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