mRNA_F-serratus_M_contig1286.2105.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1286.2105.1
Unique NamemRNA_F-serratus_M_contig1286.2105.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A6H5KH14_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH14_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 1.640e-100
Identity = 181/309 (58.58%), Postives = 213/309 (68.93%), Query Frame = 1
Query:    1 SMLGRLLARAVNDVSSQDLHDRALLYHRLLKHDPEVARRVCCCEKPPLTGEFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASH--LADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARFQSLWTRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDFSGSMHLMQCSVLKPEMSLDVVVKRETSDAAESAQVMADVLRDALSSYLR 921
            SMLGRLLARAVND+SSQDLHDRALLYHRLLKHDPEVARRVCCCE+PP++GEFAE+RDTG RD IFSEFNTLSM+YDD S+NFTLPE+R KK+KNTRA P EAEA DLADLGLA+E SKA    L D  V+A    XXXX                                                   +FQ GITI+S +FQSLW   G G++SSF++  +P ST EVEGLL+ARGV TMASG+KP  MKFFFYAKD  G  +LMQCSVLKPE  L++VVK +  D AESA+V++ V+++A + YLR
Sbjct:  527 SMLGRLLARAVNDLSSQDLHDRALLYHRLLKHDPEVARRVCCCERPPVSGEFAEDRDTGRRDVIFSEFNTLSMVYDDHSDNFTLPEFRAKKVKNTRAIPGEAEANDLADLGLALERSKADQQQLYDAAVTAPAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGV-----EFQTGITINSGQFQSLWAALGAGVESSFEMSKVPASTQEVEGLLTARGVNTMASGNKPAAMKFFFYAKDVLGLTYLMQCSVLKPERLLELVVKSDAPDPAESARVISGVVKEAFALYLR 830          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A7S4D7F5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F5_HETAK)

HSP 1 Score: 162 bits (411), Expect = 1.790e-43
Identity = 115/303 (37.95%), Postives = 160/303 (52.81%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKHDPEVARRVCCCEKPPLTGEFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARFQSLWTRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDFSGSMHLMQCSVLKPEMSLDVVVKRETSDAAESAQVMADVLRDALSS 912
            MLGRLLA A+ D S QDLHDRALLY+RLL+ +PE+A++V      P+   FAEE DTG ++ IF EFN+LS++YD   E +  PEY+V++ K+     ++ + +         E  +   LA  G +A +      +   D A      +  +M        DLLG   +D G A+      L        G  +    FQ+LW R   G    + L  LP      E L S + +YTMASGD P  MKFFF+AKD SG   L+QC   K   ++++VVK  TS+ A++AQ +ADV   AL S
Sbjct:  125 MLGRLLAAALRDASCQDLHDRALLYYRLLRANPEIAKQVIASNIQPVA-HFAEEIDTGFKEKIFKEFNSLSILYDKTEEQYIAPEYQVQQSKDNDDRSDDGDNSS-------NEQPQNGTLAPAGPNAANTPIAHQQDMLDSAPPAVAPLEASM--------DLLGF--DDDGPASAAPPPPLA----LVEGAAVSGEEFQTLWGRLPDGCSKEYVLEPLPTQAMFEERLQSHK-IYTMASGDLPDMMKFFFFAKDTSGQTFLVQCIAQKQNSTVNIVVKT-TSEVAQAAQHLADVFIIALRS 403          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A835YU68_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU68_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.890e-42
Identity = 124/321 (38.63%), Postives = 156/321 (48.60%), Query Frame = 1
Query:    1 SMLGRLLARAVNDVSSQDLHDRALLYHRLLKHDPEVARRVCCCEKPP------------LTGEFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAA-DLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRK--FQPGITIDSARFQSLWTRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYA--KDFSGSMHLMQCSVLKPEMSLDVVVKRETSDAAESAQVMADVLRDALSS 912
            SMLGRLLA AV DVSSQDLHDRALLY+RLL+ D + AR V C E               L G FAEERDT LRDAIF+EFNTL++ Y + S+ FT P YRV +       P EA  A +LADLGLA                   XXXXX                                                       +PG  + + +FQ+LW            ++  P  T EVEG +SA  + TMASGDKP TM+FFFY    D    +HL+QC++LK   +LDVV+K   +DAA +A  +A V++ A  +
Sbjct:  541 SMLGRLLAAAVEDVSSQDLHDRALLYYRLLRADADAARAVICGEHAAXXXXXXXXXXAALDGPFAEERDTSLRDAIFAEFNTLAVAYGEPSDAFTAPPYRVARAAPPPWMPPEARLARELADLGLAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVLRPGPAMGAPQFQALWGELAEAAVVQGVVLRAPAGTGEVEGRMSAACLRTMASGDKPETMRFFFYGYGSDNPSEVHLVQCTLLKSSCALDVVIKTTAADAAPAAHAVAAVVKHAFGA 861          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A6V2IVW9_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IVW9_9STRA)

HSP 1 Score: 149 bits (377), Expect = 7.070e-39
Identity = 117/322 (36.34%), Postives = 166/322 (51.55%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKH--DPEVARRVCCCEKPPLTG----EFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGA--SAPSGLVGDTMGGNDANEVDLLGL-LGED--TGKAAGGSGSDLGAKRKFQPGITIDSARFQSLWTRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDF--SGSMHLMQCSVLK-PEMSLDVVVKRETSDAAES---AQVMADVLRDALSSYL 918
            MLGRLLA+A  DVSSQDLHDRAL+Y+RLL    DP++  +V    K P+ G     FAEE D   RDA+  EFNTLS +Y   SENF   EY+VK ++  +  P +  AA L D G+      A HL  T +             +D A  SAP+      + G    EVDLLG  LG+          + SD+     F+       A+++++     + +  S  L   P STD VE  LS   + TMASG+ PT +KFF Y ++   +G + L+Q  + K P++SL + +K    D A S   +Q + D+++ AL   +
Sbjct:   65 MLGRLLAKATEDVSSQDLHDRALMYYRLLSTAGDPKIVEQVV--SKSPVIGGHGVNFAEEEDKEHRDALLEEFNTLSTLYGITSENFISEEYQVKLVRMPKEHPLDVGAAPLVDPGVN---GVAEHLQQTSI-------------NDVAPESAPAAPAAPALSG----EVDLLGFGLGDGPMVAPTPAAASSDISLDASFKISGEDYQAKWEAVADSHALSVMMSLRL--QPESTDLVESALSTLNILTMASGELPTELKFFLYGRERRENGMIFLIQAVIFKSPDLSLSITIKTSGGDQARSGELSQKVVDMMKTALQELM 362          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A7S1DCP4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCP4_CYCTE)

HSP 1 Score: 133 bits (335), Expect = 1.570e-32
Identity = 106/273 (38.83%), Postives = 140/273 (51.28%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKHDPEVARRVCCCEKP-PLTGEFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARFQSLWTRTG--VGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDFSGSMHLMQCSVLK 813
            MLGRLLA+A +DVSSQDLHDRALLY+RL++ DP+V   V       P    F+EE D  LR A+  EFNTLS IY   S NF  PE++V  +K     P       LA    A E++ +       ++    XXXXX         P+  V D +G +D             T  A G + S   A    QP   +    +QS W+       + ++  L  LP STD+VE  L+A  V TMASG+ PT  KFFFYAKD  G ++L+Q ++ K
Sbjct:  123 MLGRLLAKATDDVSSQDLHDRALLYYRLMQTDPKVVETVLKTNTAIPSNINFSEEEDDELRAALMEEFNTLSTIYGKTSVNFIGPEHQVAYVKMPEDHP-------LAPGAAATEVAPSP----VAINXXXXXXXXXXXXXXXXXTPAAGVVDLLGFDDTQPK----AQPSPTAPAPGPTQSTTLA---LQPSANMSGDEYQSHWSSIADSEAVVNTVPLSALPTSTDQVEHALAAFNVNTMASGELPTEFKFFFYAKDTDGDVYLIQSNLNK 377          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: B8C1G4_THAPS (Beta subunit of clathrin adaptor complex AP2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1G4_THAPS)

HSP 1 Score: 130 bits (326), Expect = 5.510e-30
Identity = 103/297 (34.68%), Postives = 144/297 (48.48%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKH--DPEVARRVCCCEKPPLTGE-FAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIK--NTRASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKR-KFQPGITIDSARFQSLW---TRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKD---FSGSMHLMQCSVLKPEMSLDVVVKRETSD 858
            MLGRLL +A  DV+SQDLHDRAL Y+RLL+   DP VA+ +   +   +T + FAEE D+ L+ A+  EFNTL  IY  R+ENF   E  V+ +K       P EA  A + D G+       +++ D    A              A  P+ +      G    EVDLLG   +  G     + S    +    +  +++    +Q  W   + T   + S+  +   P STD VEG LSA  V+TMASG+ PT  KFF Y ++   F G   L+Q  V K   SL + +K    D
Sbjct:  557 MLGRLLKKATEDVTSQDLHDRALFYYRLLRSSPDPSVAKSIITSKSMTMTTDHFAEEDDSELKAALMDEFNTLCTIYHCRAENFIDDENIVRFVKMPTDHPLPREAVVAPVVDPGV-------NNITDQFGGASL------------AETPAPVAAPAYSG----EVDLLGFGDDSMGAPPPPAASTSTLQSLSLKSNVSLTGEEYQHKWGAVSDTEAVVISALPISNSPSSTDTVEGALSAFSVFTMASGELPTEFKFFLYGQEEDSFGGGFFLIQAVVQKAPASLTLTIKPNGGD 830          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: K0SY98_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SY98_THAOC)

HSP 1 Score: 128 bits (321), Expect = 2.600e-29
Identity = 98/319 (30.72%), Postives = 146/319 (45.77%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKH--DPEVARRVCCCEKPPLTGEFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASHLADTGVSA-DDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARFQSLWTRTGVG---MKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKD---FSGSMHLMQCSVLKPEMSLDVVVKRETSDA-----AESAQVMADVLRDALSSYL 918
            MLGRL  +A  DVSSQDLHDRAL Y+RLL+   DP++ + +        T +FAEE D+ L+ A+  EFNTL  +Y  + ENF      V  ++  +  P  ++A               + + D GV+A  D           G +AP         G    EVDLLG   ++    A  S +        +  +T+    +QSLW     G   +  +  +   P +TD VE  L    V+TMASG+ PT  KFF Y ++   F G   L+Q  +LK   SL + +K    D       E    + ++++ +L  Y+
Sbjct:  611 MLGRLFKKATEDVSSQDLHDRALFYYRLLRSSPDPDIVKSIISKSMTMSTRQFAEEDDSELKAALMDEFNTLCTVYRCKPENFIEDANIVPFVRMPKEHPLPSDAP-------------LAPVPDPGVNAVTDQLGGASITEQQGQAAPPPPAPAVTSG----EVDLLGFGFDEPATPAPVSSAGSLQSLSLKASVTLSGDAYQSLWGSVPDGEAIVTPALPMRTAPSATDAVEASLKTFNVFTMASGELPTEFKFFLYGQEEDAFGGGFFLIQAIMLKAPASLSLTIKVSGGDPDPTKRKEKTDQLIELIKSSLGQYI 912          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A7S3L4E5_9STRA (AP complex subunit beta n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4E5_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.020e-28
Identity = 106/305 (34.75%), Postives = 144/305 (47.21%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKH--DPEVARRVCCCEKP-PLTGEFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARFQSLWTRTGVG--MKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDFSGSMH-LMQCSVLK--PEMSLDVVVKRETSDAAESAQVMADVL 894
            MLGRLLA+A +DVSSQDLHDRALLY+R+L+   DP +   +       P   +F+EE D  LR+ I  EF+TL++IY   S NF  PEY+ K  K     P      D   +G+        H   + ++A         A+   A+AP             +E DLLG  G     A      + G     Q  +TI   ++Q +W          S   L  LP ST+ VE +L A  V TMASGD P  MKFF YA+D   S + L+Q ++ K  P+  L +V  +       + Q M D L
Sbjct:  532 MLGRLLAKATDDVSSQDLHDRALLYYRMLRSGTDPNLLESLVKTNSAVPEQAQFSEEDDAELRNKIMEEFDTLAIIYGKPSVNFIDPEYQFKYKKMPDDHP--LAPGDNGSVGV--------HSVPSTIAAP--------AAATSATAPP-----------TDEFDLLGFGGP---PAPAPPAPETGGFALNQD-VTITDTQYQEMWESVADADATVSMIQLRALPGSTEAVENVLEAAAVKTMASGDLPAEMKFFLYAQDSGSSCYFLIQANIEKSSPQEPLMIVTVKICGSIPGTTQAMTDQL 803          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: A0A4D9CWN1_9STRA (B2-adapt-app_C domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWN1_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.690e-25
Identity = 109/336 (32.44%), Postives = 158/336 (47.02%), Query Frame = 1
Query:    1 SMLGRLLARAVNDVSSQDLHDRALLYHRLLKHDPEVARRVCCCE------KPPLTGEFAEERD-TGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNT--------RASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGL-LGEDTGKAAGGSGSDLGAKRKFQPGIT--IDSAR-----FQSLWTRTGVGMKSSFDLIGLPRS-TDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDFSGSMHLMQCSVLKPEMSLDVVVK-------RETSDAAE-SAQVMADVLRDALSS 912
            SMLGRLLA A ND++SQD+HDRALLY+RLL  D E A+RV   E      +  + G FAEERD T LRD +F EFNTL++IY   S  F  P YR+K  + +        +         +L DL     L  A  + + GV ++         S  G++ P G    T   +D  ++  +G+ L   T +    S S    ++ F       IDS R     FQ LW      +  + DL  LP      +E  L +RG+  +ASG+     K F Y +   G ++L+Q  + K    L++ +K        E  D  + SA  + +++   LSS
Sbjct:  526 SMLGRLLAAATNDLTSQDVHDRALLYYRLLVADVEAAKRVVLGEHEVDVNRTTIVGTFAEERDMTTLRDKLFGEFNTLAVIYGKPSSQFVSPSYRIKPAETSLTPFMMGVQIGDSGNNGNNLLDLHADDSLLPAGGV-ECGVESES-------PSRAGSTNPEGSTAYTGPSSDLLDMSDMGVSLAVPTDRITTPSAS----QQDFCTSTLALIDSFRMEPETFQHLWAELPESISYNVDLKVLPTDGLSTLETSLLSRGIKCLASGELTDVFKLFLYGQHELGRLYLIQILIHKLSKRLNLTLKIGRSEMESEGDDGKDRSANAVVELITQVLSS 849          
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Match: B7G374_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G374_PHATC)

HSP 1 Score: 116 bits (290), Expect = 3.030e-25
Identity = 102/280 (36.43%), Postives = 131/280 (46.79%), Query Frame = 1
Query:    4 MLGRLLARAVNDVSSQDLHDRALLYHRLLKH--DPEVARRVCCCEKPPLTG-EFAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEEAEAADLADLGLAIELSKASHLADTGVSADDHXXXXXRASHDGASAPSGLVGDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARFQSLW--TRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKFFFYAKDFS-GSMHLMQCSVLKPEMS 825
            MLGRLLA A +DVSSQDLHDRAL+Y+R+L+   DP    RV         G  FAEE D+ LR  +  EFNTLS+IY   S NF  PE++VK  K     P+E   A                  +TG            A    AS P  +V        +N+VDLLG    +   A     S+           ++    +QS W          S   L  LP STDE+E +L+A  + TMASG+ P   KFF YAKD S G+  ++Q +V K   S
Sbjct:  531 MLGRLLAVATDDVSSQDLHDRALMYYRMLQSGADPHTLERVVRTSTVVAQGVSFAEEDDSELRKELMEEFNTLSIIYGKPSVNFIAPEFQVKYKK----MPDEHPLAP----------------GETG-----SFVAPPVAPVPAASIP--VV--------SNDVDLLGFGDAEPMAAPAPMASN---NLTLSASASMTGGEYQSQWGSVSDADATVSDVPLRALPSSTDEIENVLAAVNIMTMASGELPNEFKFFLYAKDSSSGATIMIQTNVDKSSPS 772          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1286.2105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH14_9PHAE1.640e-10058.58B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A7S4D7F5_HETAK1.790e-4337.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YU68_9STRA3.890e-4238.63Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A6V2IVW9_9STRA7.070e-3936.34Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S1DCP4_CYCTE1.570e-3238.83Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
B8C1G4_THAPS5.510e-3034.68Beta subunit of clathrin adaptor complex AP2 n=1 T... [more]
K0SY98_THAOC2.600e-2930.72Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3L4E5_9STRA7.020e-2834.75AP complex subunit beta n=1 Tax=Amphora coffeiform... [more]
A0A4D9CWN1_9STRA1.690e-2532.44B2-adapt-app_C domain-containing protein n=2 Tax=M... [more]
B7G374_PHATC3.030e-2536.43Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1286contigF-serratus_M_contig1286:8295..11919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue4.6e-86
Seed eggNOG ortholog2880.D8LNY8
Preferred nameAP4B1
KEGG koko:K12401
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043424,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061938,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size924
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1286.2105.1prot_F-serratus_M_contig1286.2105.1Fucus serratus malepolypeptideF-serratus_M_contig1286 8298..11919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.0860736-UTR-F-serratus_M_contig1286:8294..82971622929225.0860736-UTR-F-serratus_M_contig1286:8294..8297Fucus serratus maleUTRF-serratus_M_contig1286 8295..8297 +
1690962757.6861677-UTR-F-serratus_M_contig1286:8294..82971690962757.6861677-UTR-F-serratus_M_contig1286:8294..8297Fucus serratus maleUTRF-serratus_M_contig1286 8295..8297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929225.102725-CDS-F-serratus_M_contig1286:8297..84691622929225.102725-CDS-F-serratus_M_contig1286:8297..8469Fucus serratus maleCDSF-serratus_M_contig1286 8298..8469 +
1690962757.701906-CDS-F-serratus_M_contig1286:8297..84691690962757.701906-CDS-F-serratus_M_contig1286:8297..8469Fucus serratus maleCDSF-serratus_M_contig1286 8298..8469 +
1622929225.1168406-CDS-F-serratus_M_contig1286:8920..90151622929225.1168406-CDS-F-serratus_M_contig1286:8920..9015Fucus serratus maleCDSF-serratus_M_contig1286 8921..9015 +
1690962757.7160728-CDS-F-serratus_M_contig1286:8920..90151690962757.7160728-CDS-F-serratus_M_contig1286:8920..9015Fucus serratus maleCDSF-serratus_M_contig1286 8921..9015 +
1622929225.127427-CDS-F-serratus_M_contig1286:9574..98811622929225.127427-CDS-F-serratus_M_contig1286:9574..9881Fucus serratus maleCDSF-serratus_M_contig1286 9575..9881 +
1690962757.7283285-CDS-F-serratus_M_contig1286:9574..98811690962757.7283285-CDS-F-serratus_M_contig1286:9574..9881Fucus serratus maleCDSF-serratus_M_contig1286 9575..9881 +
1622929225.1420808-CDS-F-serratus_M_contig1286:10814..110051622929225.1420808-CDS-F-serratus_M_contig1286:10814..11005Fucus serratus maleCDSF-serratus_M_contig1286 10815..11005 +
1690962757.7395117-CDS-F-serratus_M_contig1286:10814..110051690962757.7395117-CDS-F-serratus_M_contig1286:10814..11005Fucus serratus maleCDSF-serratus_M_contig1286 10815..11005 +
1622929225.154467-CDS-F-serratus_M_contig1286:11763..119191622929225.154467-CDS-F-serratus_M_contig1286:11763..11919Fucus serratus maleCDSF-serratus_M_contig1286 11764..11919 +
1690962757.7511497-CDS-F-serratus_M_contig1286:11763..119191690962757.7511497-CDS-F-serratus_M_contig1286:11763..11919Fucus serratus maleCDSF-serratus_M_contig1286 11764..11919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1286.2105.1

>prot_F-serratus_M_contig1286.2105.1 ID=prot_F-serratus_M_contig1286.2105.1|Name=mRNA_F-serratus_M_contig1286.2105.1|organism=Fucus serratus male|type=polypeptide|length=307bp
MLGRLLARAVNDVSSQDLHDRALLYHRLLKHDPEVARRVCCCEKPPLTGE
FAEERDTGLRDAIFSEFNTLSMIYDDRSENFTLPEYRVKKIKNTRASPEE
AEAADLADLGLAIELSKASHLADTGVSADDHHHHQQRASHDGASAPSGLV
GDTMGGNDANEVDLLGLLGEDTGKAAGGSGSDLGAKRKFQPGITIDSARF
QSLWTRTGVGMKSSFDLIGLPRSTDEVEGLLSARGVYTMASGDKPTTMKF
FFYAKDFSGSMHLMQCSVLKPEMSLDVVVKRETSDAAESAQVMADVLRDA
LSSYLR*
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mRNA from alignment at F-serratus_M_contig1286:8295..11919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1286.2105.1 ID=mRNA_F-serratus_M_contig1286.2105.1|Name=mRNA_F-serratus_M_contig1286.2105.1|organism=Fucus serratus male|type=mRNA|length=3625bp|location=Sequence derived from alignment at F-serratus_M_contig1286:8295..11919+ (Fucus serratus male)
TCGATGCTGGGCCGCCTGCTCGCCCGAGCAGTGAACGATGTGTCCTCCCA AGACCTGCACGACAGAGCCCTATTATACCACCGCTTGCTCAAGCATGATC CGGAGGTGGCCCGACGGGTTTGCTGTTGCGAGAAGCCTCCCCTCACAGGG GAGTTTGCCGAGGAGCGAGACACGGGTGGGTGTGTGTGGTTCTAGTCCTG ACACAAGGAAACGGGGGGGGGGGGGAGGGGGCGAAACACAAAACAAAAAC AAGTACGGTACATCAGCACAATCTCTATTACAGTATATCTGGTCATTTGT AACTTTGTGAAAGGGGAAATGTGGGGGGAATGACACGCGTGGTGTGTCAA ATGTGTGTGTGTGTTTTTTTTGTTTCTCAGCGGAGGGTTTGTTAGTGACG TTGTTTGACGTTGAGTGTTTCTGTCCTTGCGTTGCGGCAAGTCATGTCCG ACACACCTAATGTTGCTTTGGATAATACCCTCATTTATATATATATTGGG GTGAGGGGTGAGGTGTGGGGCGTTATTTTTTTTTTTATGCCATGGTACTG CGGCTGCGTCCGTAACCATTCCCGGTCTCTGATACTGATACTGATACTGA TACTGTGGCTGCTTGCCCCGGGGCAGGTCTGAGGGATGCTATTTTCAGCG AGTTCAACACGCTCTCCATGATTTACGACGACCGCAGCGAAAACTTCACT TTACCGGAGTACAGGGTCAAGGTGAGAAATAATGCAGCATTCTCATGTAC ACATATACATATAGAGCTTATATATATATATATATATTATATATAAATAT AGCCTATAGGAGAGACGATACGCACGCACCGCGTGTTGCACTCAAGCAGG CAGGCAGGTATCTATTTTCTCTCTACCAACTCCTTGCTTTGTTATTTGTT GTTTTCCTTGATGCGGGGGGAGGGGAGGGGATGAAATGTTCTCCTAGAAA TGAGGACCCGCGCGGCTGTGATGAGTGGTTGTCGCACGTTGCAAAGTCCG ACAGGAGCAATGTAATTTGTTGTATGTATTGCAGCAACGAGAGCGCACTT TTGTTCACACGAAATGATCTCTTGTCCATCCATCCAGGGGTAACCCGTGA AATGCTAATGCACTGTCTGTACAAGTTTGGCGAGCGAGCTGAGATTTGCA CTCCGCGATGGCGTTTCGCCCTGCTGTCCTTTTATTTCAATATAATATAT ATATAGTATATACTTTAAGATGTATGATAAATATGTGATAGTATATACTT TAAGATGTATGATAAATATGTGATGTTCAGAAAATCAAGAACACCCGAGC CTCGCCGGAGGAAGCCGAAGCCGCGGACCTCGCGGACCTGGGGCTCGCCA TCGAACTGTCCAAGGCCTCCCATCTGGCTGACACTGGGGTGTCGGCTGAC GACCACCACCACCATCAACAACGCGCGAGCCACGACGGAGCGTCGGCGCC ATCCGGTCTCGTGGGCGACACGATGGGCGGCAATGATGCCAATGAGGTGG ATCTCCTGGGCCTTCTGGGGGAAGACACCGGAAAGGCGGCAGGCGGCAGC GGGAGCGATCTGGGCGCGAAGAGAAAGTTTCAACCAGGTGAATCCCCCCC TGCTCTTTTTTTAGTTTGTGTGTGTGTCGCACAGAGGAATTTTTCTTATC GAGGATACACTATTGATATTAACATTACTTTTTAGTATTTACTGATGCCA CTTGCTACATGCTACTATTTTATTGCAGCGGCTGGTGTGGAAACACGAAA AGTTTTGAGTGAGAGAAGGTCAAAACCACGATAACCATGACAAAACAACC ATAACTTGTCTTATGACGAGGTGTAGGGAGAGTAGAAGTTGCATCGCGGT AAAAGAGTCGCCGGCGTGAATCCTGGGGGAGATATTAGTTAGTCCTTGTC ACTATTAATAGAAGTCTATAGTAGTAATTTATAGTAATTTATACTTCGTA GTAATTGATAGTCACCACAGGCGGCATGGGCAACGTTGTAGTAGGTTTGT TGGGATTGGTAGTGTAAAGGGTGATACAAAAACCGAATTAATAATCGGTA CGCAATTGCGTGACCCGATAAACTCGGGACTGACCCAATGGCGTACGGCG GTTTAAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTA AGTAAGCGCCAGGGTCAGCCTGAGTATTGAGATGAGCAGGCTGACGCGGG ACGGGACTGCCGAACCCGTCTTGTGAGACCAAATTCTCAGGCGCGAACGA GGAGTGGGAAATATTATTTTTCTATGTGCAGCTGACCACGAGACGGATTG GCAACCTTACCCGGTTAGTTCTTACCCTTCCTATATGTGATGGATCATAC ATAAACATAGCGGAAATGATGTCATCTGTCGCCTATGTGTTGTAATATAT GTCGAGAGATAAGACAGACTATGACGTGCTACTGGTACTATTCAAGAGGA TCATGCAAATAGGCTGCCGTCTCTATGTAATAATCTTGTCTCTCTCTCTC TCTCGCTTTGTGTCCCACAGGCATCACGATCGATTCCGCCCGCTTCCAGA GTCTCTGGACCCGTACGGGGGTGGGCATGAAGTCGTCGTTTGATCTGATC GGGTTGCCCCGTTCGACGGACGAGGTGGAGGGTCTGCTGTCGGCGAGAGG CGTGTACACCATGGCGTCCGGGGACAAGCCAACGACCATGAAATTCTTTT TTTACGCCAAGGTCTGATGTTATGTGTTTTATCAATAGCTCTGTTAATAG GTCTATTGATGAATAAAATTATGTGCAGTAACGGCCCAGCCCGCTCATAA GAAACGCGTTTGTAAGAGAATCAGGCTTGGTATATATATATATATATTCA TTTAAAAACTGCGGAGCCTCGTGCTACGAATCTGGTAGATTTGTATAGGA ATAGCTATGATAAATTCCCTACTTTCTCTCTGAATCATATAAAAAACTGA AGCGCAGCACGGATTTGGGTTTCTTATGAGAGGGCCGGTACTGTATCTTA GAGTTaAATGTCTCATATGTCTCGCGCAATGCAATATGAGAGCGACAGCA ACGCCAAACACACATTTTTCCAATACTACGACACCCGTGTGAAGACTTGG GAAAGGACAGGATTATAGACGGCAATGGAGTTCAGGATTGGTAGTTGGAG CGTCCTGAAATGTGTTTAAGCGCAACCGGCTGGCCTCCCTACCCCCCCAA AGTAAATATATATATATATCTATACCGGTACATATTATATATCTTTCTCT ATATAATATTCATCTTAAAATGTATATTCTTGAAACATGATTTATCTGGA TTGATGCGCCGCATGCAGTGCTTGGTTGGGGACACATAATGTTAAAGACG GCATTGAGATTCAGGATTAGTAGTTGGAGCGTCCTGATATTTGTTGTATA TATAGCACATTGGCTGACCCCTCCCCATCTCCCCGCCCCCCCAATAACCC CGGATTACTCTTGAAACAGGATTTCTCTGGATCGATGCATCTCATGCAGT GCTCGGTTTTGAAGCCCGAGATGTCGCTTGACGTGGTGGTCAAACGCGAG ACTTCCGATGCCGCTGAGAGCGCGCAGGTCATGGCCGATGTGCTCAGGGA CGCCCTTTCGTCCTACTTGAGATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1286:8295..11919+

>mRNA_F-serratus_M_contig1286.2105.1 ID=mRNA_F-serratus_M_contig1286.2105.1|Name=mRNA_F-serratus_M_contig1286.2105.1|organism=Fucus serratus male|type=CDS|length=1842bp|location=Sequence derived from alignment at F-serratus_M_contig1286:8295..11919+ (Fucus serratus male)
ATGCTGGGCCGCCTGCTCGCCCGAGCAGTGAACGATGTGTCCTCCCAAGA
CCTGCACGACAGAGCCCTATTATACCACCGCTTGCTCAAGCATGATCCGG
AGGTGGCCCGACGGGTTTGCTGTTGCGAGAAGCCTCCCCTCACAGGGGAG
TTTGCCGAGGAGCGAGACACGGATGCTGGGCCGCCTGCTCGCCCGAGCAG
TGAACGATGTGTCCTCCCAAGACCTGCACGACAGAGCCCTATTATACCAC
CGCTTGCTCAAGCATGATCCGGAGGTGGCCCGACGGGTTTGCTGTTGCGA
GAAGCCTCCCCTCACAGGGGAGTTTGCCGAGGAGCGAGACACGGGTCTGA
GGGATGCTATTTTCAGCGAGTTCAACACGCTCTCCATGATTTACGACGAC
CGCAGCGAAAACTTCACTTTACCGGAGTACAGGGTCAAGGTCTGAGGGAT
GCTATTTTCAGCGAGTTCAACACGCTCTCCATGATTTACGACGACCGCAG
CGAAAACTTCACTTTACCGGAGTACAGGGTCAAGAAAATCAAGAACACCC
GAGCCTCGCCGGAGGAAGCCGAAGCCGCGGACCTCGCGGACCTGGGGCTC
GCCATCGAACTGTCCAAGGCCTCCCATCTGGCTGACACTGGGGTGTCGGC
TGACGACCACCACCACCATCAACAACGCGCGAGCCACGACGGAGCGTCGG
CGCCATCCGGTCTCGTGGGCGACACGATGGGCGGCAATGATGCCAATGAG
GTGGATCTCCTGGGCCTTCTGGGGGAAGACACCGGAAAGGCGGCAGGCGG
CAGCGGGAGCGATCTGGGCGCGAAGAGAAAGTTTCAACCAGAAAATCAAG
AACACCCGAGCCTCGCCGGAGGAAGCCGAAGCCGCGGACCTCGCGGACCT
GGGGCTCGCCATCGAACTGTCCAAGGCCTCCCATCTGGCTGACACTGGGG
TGTCGGCTGACGACCACCACCACCATCAACAACGCGCGAGCCACGACGGA
GCGTCGGCGCCATCCGGTCTCGTGGGCGACACGATGGGCGGCAATGATGC
CAATGAGGTGGATCTCCTGGGCCTTCTGGGGGAAGACACCGGAAAGGCGG
CAGGCGGCAGCGGGAGCGATCTGGGCGCGAAGAGAAAGTTTCAACCAGGC
ATCACGATCGATTCCGCCCGCTTCCAGAGTCTCTGGACCCGTACGGGGGT
GGGCATGAAGTCGTCGTTTGATCTGATCGGGTTGCCCCGTTCGACGGACG
AGGTGGAGGGTCTGCTGTCGGCGAGAGGCGTGTACACCATGGCGTCCGGG
GACAAGCCAACGACCATGAAATTCTTTTTTTACGCCAAGGCATCACGATC
GATTCCGCCCGCTTCCAGAGTCTCTGGACCCGTACGGGGGTGGGCATGAA
GTCGTCGTTTGATCTGATCGGGTTGCCCCGTTCGACGGACGAGGTGGAGG
GTCTGCTGTCGGCGAGAGGCGTGTACACCATGGCGTCCGGGGACAAGCCA
ACGACCATGAAATTCTTTTTTTACGCCAAGGATTTCTCTGGATCGATGCA
TCTCATGCAGTGCTCGGTTTTGAAGCCCGAGATGTCGCTTGACGTGGTGG
TCAAACGCGAGACTTCCGATGCCGCTGAGAGCGCGCAGGTCATGGCCGAT
GTGCTCAGGGACGCCCTTTCGTCCTACTTGAGATGAGATTTCTCTGGATC
GATGCATCTCATGCAGTGCTCGGTTTTGAAGCCCGAGATGTCGCTTGACG
TGGTGGTCAAACGCGAGACTTCCGATGCCGCTGAGAGCGCGCAGGTCATG
GCCGATGTGCTCAGGGACGCCCTTTCGTCCTACTTGAGATGA
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