mRNA_F-serratus_M_contig126.1954.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig126.1954.1
Unique NamemRNA_F-serratus_M_contig126.1954.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: D7G774_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G774_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.210e-37
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKFHKGNGVWRSPEEYAWE 234
            MAL AARG++ALHE+PGGPVVH DLQPRQLL+D +G VK+NDLNRCRFM RDS GE CPF   KGNGVWRSPEEYA E
Sbjct:  107 MALQAARGIQALHEMPGGPVVHADLQPRQLLLDENGVVKVNDLNRCRFMARDSSGEPCPFYISKGNGVWRSPEEYAGE 184          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: A0A6H5JFK2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK2_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.070e-36
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKFHKGNGVWRSPEEYAWE 234
            MAL AARG++ALHE+PGGPVVH DLQPRQLL+D +G VK+NDLNRCRFM RDS GE CPF   KGNGVWRSPEEYA E
Sbjct:  233 MALQAARGIQALHEMPGGPVVHADLQPRQLLLDDNGVVKVNDLNRCRFMARDSSGEPCPFYISKGNGVWRSPEEYAGE 310          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: B7G367_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G367_PHATC)

HSP 1 Score: 108 bits (269), Expect = 9.640e-26
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMG-RDSEGETCPFKFHKGNGVWRSPEEYA 228
            +AL AAR +RALHE+PGGP+VH DLQPRQ L+  DGTVKLND NRCRFMG R   G  CP       G WRSPEEYA
Sbjct:  379 LALQAARAVRALHELPGGPIVHADLQPRQYLVKDDGTVKLNDFNRCRFMGHRYDTGACCPLHIPSAPGKWRSPEEYA 455          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: A0A1Z5KBS5_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBS5_FISSO)

HSP 1 Score: 102 bits (253), Expect = 1.370e-23
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKFHKGNGVWRSPEEYAWE 234
            +ALD ARG++ALHEIPGGP++H D+QPRQ L+  +G +K+ND NRCRFMG+D+ G  C        G  RSPEEY  E
Sbjct:  338 LALDVARGMKALHEIPGGPIIHADIQPRQFLVSSNGVLKVNDFNRCRFMGQDARGIPCKLMIPSAPGKARSPEEYEGE 415          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: D8LHZ9_ECTSI (Serine/threonine-protein kinase pkn5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.970e-23
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKFHKGN-GVWRSPEEYAWE 234
            MALDAARGL+ALHE PGG +VH D++P+QL++D  G +K+NDLN C F   D++G TCP++      G WRSPE  A E
Sbjct:   51 MALDAARGLQALHEAPGGAIVHFDMKPQQLMVDDQGRLKINDLNMCSFTDADADGNTCPYESTASRVGPWRSPENIAGE 129          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: A0A6H5J7B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.230e-21
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKFHKGN-GVWRSPEEYAWE 234
            MALDAARGL+ALHE PGG ++H D++P+QL++D  G +K+NDLN C F   D++G TCP++      G WRSPE  A E
Sbjct:  350 MALDAARGLQALHEAPGGTIIHFDMKPQQLMVDDQGRLKINDLNMCSFPDTDADGNTCPYESSASRVGPWRSPENIAGE 428          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: D8LI06_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI06_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.500e-21
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKFHK-GNGVWRSPEEYAWE 234
            MALDAARGL+ALHE PGG +VH D++P+QL++D  G VK+NDL+ CRF   D EG TCP+      +G +RSPE  A E
Sbjct:  105 MALDAARGLQALHEAPGGAIVHSDIKPQQLMLDEYGRVKINDLSMCRFPPADVEGNTCPYPARACKSGPFRSPENIAGE 183          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: A0A6H5JYW8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 7.630e-21
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGRDSEGETCPFKF---HKGN-GVWRSPEEYA 228
            M+LDA RGL+ALHE  GGPVVH D++P QLL+ GDG VKLND N   FM R  +G+ CPF     H+G    WRSPE +A
Sbjct:   96 MSLDAVRGLQALHEAVGGPVVHFDIKPPQLLVTGDGRVKLNDFNVAWFMSRGPDGKPCPFNMGIKHRGQTSPWRSPEYHA 175          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: A0A7R9W586_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W586_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.260e-19
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGD-GTVKLNDLNRCRFMGRDS-EGETCPFKFHKGNGVWRSPEEY 225
            +ALD  RGL +LH IPGGP++H D+Q +Q L+D   G VK+ND NRCRF+ RD+  G  CP +     G  RSPEEY
Sbjct:  107 LALDVFRGLASLHTIPGGPIIHADIQAKQFLVDSRAGVVKVNDFNRCRFLARDNVTGVPCPVRIPSAPGANRSPEEY 183          
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Match: A0A1Z5JLQ6_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLQ6_FISSO)

HSP 1 Score: 88.6 bits (218), Expect = 6.370e-19
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMGR-DSEGETCPFKFHKGNGVWRSPEEY 225
            +AL AARGL ALHEIPGGP++H DL  RQ L+  DG VK+ND NRCRFMG   +  + C F+     G  R+PEEY
Sbjct:  229 LALGAARGLAALHEIPGGPIIHVDLGARQFLVGEDGNVKINDFNRCRFMGYYKTTKQPCDFRIQIAPGTDRAPEEY 304          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig126.1954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G774_ECTSI3.210e-3778.21Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
A0A6H5JFK2_9PHAE3.070e-3678.21Protein kinase domain-containing protein n=1 Tax=E... [more]
B7G367_PHATC9.640e-2666.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KBS5_FISSO1.370e-2356.41Protein kinase domain-containing protein n=2 Tax=F... [more]
D8LHZ9_ECTSI5.970e-2355.70Serine/threonine-protein kinase pkn5 n=1 Tax=Ectoc... [more]
A0A6H5J7B7_9PHAE2.230e-2154.43Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LI06_ECTSI6.500e-2156.96Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
A0A6H5JYW8_9PHAE7.630e-2157.50Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7R9W586_9STRA2.260e-1953.25Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1Z5JLQ6_FISSO6.370e-1956.58Protein kinase domain-containing protein n=2 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig126contigF-serratus_M_contig126:502098..502334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2850.Phatr47382
KEGG koko:K04427
KEGG Pathwayko04010,ko04013,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons1
Model size238
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.7957957-CDS-F-serratus_M_contig126:502097..5023341622929193.7957957-CDS-F-serratus_M_contig126:502097..502334Fucus serratus maleCDSF-serratus_M_contig126 502098..502334 +
1690962744.1960337-CDS-F-serratus_M_contig126:502097..5023341690962744.1960337-CDS-F-serratus_M_contig126:502097..502334Fucus serratus maleCDSF-serratus_M_contig126 502098..502334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig126.1954.1prot_F-serratus_M_contig126.1954.1Fucus serratus malepolypeptideF-serratus_M_contig126 502098..502334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig126.1954.1

>prot_F-serratus_M_contig126.1954.1 ID=prot_F-serratus_M_contig126.1954.1|Name=mRNA_F-serratus_M_contig126.1954.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MALDAARGLRALHEIPGGPVVHGDLQPRQLLMDGDGTVKLNDLNRCRFMG
RDSEGETCPFKFHKGNGVWRSPEEYAWEA
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mRNA from alignment at F-serratus_M_contig126:502098..502334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig126.1954.1 ID=mRNA_F-serratus_M_contig126.1954.1|Name=mRNA_F-serratus_M_contig126.1954.1|organism=Fucus serratus male|type=mRNA|length=237bp|location=Sequence derived from alignment at F-serratus_M_contig126:502098..502334+ (Fucus serratus male)
ATGGCGCTCGACGCCGCCCGTGGGCTGCGGGCGTTGCACGAAATACCTGG AGGCCCTGTAGTGCACGGCGACTTGCAGCCGCGGCAGCTGTTGATGGACG GGGACGGGACGGTCAAACTGAACGATCTCAATCGCTGCCGGTTCATGGGT CGAGACTCGGAAGGGGAGACATGTCCCTTCAAGTTCCACAAGGGAAACGG CGTGTGGCGGTCGCCTGAAGAATACGCCTGGGAGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig126:502098..502334+

>mRNA_F-serratus_M_contig126.1954.1 ID=mRNA_F-serratus_M_contig126.1954.1|Name=mRNA_F-serratus_M_contig126.1954.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig126:502098..502334+ (Fucus serratus male)
ATGGCGCTCGACGCCGCCCGTGGGCTGCGGGCGTTGCACGAAATACCTGG
AGGCCCTGTAGTGCACGGCGACTTGCAGCCGCGGCAGCTGTTGATGGACG
GGGACGGGACGGTCAAACTGAACGATCTCAATCGCTGCCGGTTCATGGGT
CGAGACTCGGAAGGGGAGACATGTCCCTTCAAGTTCCACAAGGGAAACGG
CGTGTGGCGGTCGCCTGAAGAATACGCCTGGGAGGCGATGGCGCTCGACG
CCGCCCGTGGGCTGCGGGCGTTGCACGAAATACCTGGAGGCCCTGTAGTG
CACGGCGACTTGCAGCCGCGGCAGCTGTTGATGGACGGGGACGGGACGGT
CAAACTGAACGATCTCAATCGCTGCCGGTTCATGGGTCGAGACTCGGAAG
GGGAGACATGTCCCTTCAAGTTCCACAAGGGAAACGGCGTGTGGCGGTCG
CCTGAAGAATACGCCTGGGAGGCG
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