mRNA_F-serratus_M_contig1248.1877.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: D7FI72_ECTSI (4-hydroxyphenylpyruvate dioxygenase, plastid n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI72_ECTSI) HSP 1 Score: 365 bits (937), Expect = 3.600e-114 Identity = 189/297 (63.64%), Postives = 219/297 (73.74%), Query Frame = 3
Query: 801 LRYEPWETWCCGSSASKARRVRRGGSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPSLTEDQLAGIEELGLLVDED-DEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGA------EAVEMLQRPGCGGFGLGNFKALFESIENYETTLAVG 1670
+ +EP A+ GG +FLPNF D+ ARE FGLQR DH V NVWD+LE +++ S+TGMHEF+EFA+ADVGT++SGLNSIVLA++ E VLLPLNEPTFGTAKKSQIQTFLEQN G GLQH+ALKT+DI RT+R M ANS LGGFEFMEPPG +YYR+VP RIPSLTEDQL +EELGLL D+D D+G L+Q+FTKPVGDRPTLF EIIQRIGC EAT + R D G E E+LQR GCGGFGLGNFKALFESIE YE+TLA+G
Sbjct: 217 ISFEPESKMVGEGDIGGAKGGGDGGRFEGAFLPNFVDIEGEEAREDFGLQRADHVVGNVWDMLEQGEYMTSMTGMHEFAEFAAADVGTVDSGLNSIVLASNNEMVLLPLNEPTFGTAKKSQIQTFLEQNDGPGLQHIALKTNDIFRTMRLMRANSGLGGFEFMEPPGASYYRDVPRRIPSLTEDQLRQLEELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNEGDRGVFGPADEDERGVRVSSRVEEGELLQRGGCGGFGLGNFKALFESIEKYESTLAIG 513
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A835YZ91_9STRA (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ91_9STRA) HSP 1 Score: 298 bits (763), Expect = 1.470e-89 Identity = 148/266 (55.64%), Postives = 198/266 (74.44%), Query Frame = 3
Query: 888 SFLPNFEDV--PQRVAREG----FGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
+FLP F+D+ P+ E +G++R+DHAV NVWD++E+V+ L +TGMH F+EF + DVGT++SGLNS+VLA++ E VLLPLNEPT+GT +KSQIQT+LEQN G GLQHLALKT+DI+ T+R M S +GGFEF++ PG AYY ++P R+P LT Q++ ++ELG+L D+DD+G L+QIFTKP GDRPT F+EIIQRIGC D +++ PG + V+M+QR GCGGFG GNF+ALF+SIE+YE L V
Sbjct: 191 AFLPGFQDISAPKGAGGEAWPATYGIERVDHAVGNVWDMMEAVERLGGMTGMHRFAEFTAEDVGTVDSGLNSVVLASNNEVVLLPLNEPTYGTKRKSQIQTYLEQNVGPGLQHLALKTNDIIGTLRLMKERSHMGGFEFLDAPGEAYYSDLPARVPELTPQQVSELQELGVLADKDDQGILLQIFTKPCGDRPTFFIEIIQRIGC------------EDAVEL-----PGGQ-VQMVQRGGCGGFGKGNFRALFKSIEDYEKKLGV 438
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: C1DZE9_MICCC (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZE9_MICCC) HSP 1 Score: 288 bits (737), Expect = 1.010e-85 Identity = 152/264 (57.58%), Postives = 189/264 (71.59%), Query Frame = 3
Query: 894 LPNFEDVPQRVAREG---FGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDL-GGFEFMEPPGPAYYRNVPNRIPS--LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
LP +E VP A +GL+RLDHAV NV DLLE+VD++++ TGMHEF+EF + DVGT++SGLNS+VLAN+ E VLLP+NEPTFGT +KSQIQT+LEQN G GLQHLALKTD+I TVR M A+ GGFEF +P YYR +P R+ + L+ +Q +EELGLLVD+DD+G LIQ+FTKPVGDRPT+F+EIIQRIGC+ E G K+++ M Q GCGGFG GNF LF+SIEN+E TL V
Sbjct: 194 LPRYEPVPIEPAGSEPLCYGLRRLDHAVGNVHDLLETVDYISNFTGMHEFAEFTAEDVGTVDSGLNSMVLANNSEYVLLPVNEPTFGTKRKSQIQTYLEQNKGPGLQHLALKTDNIFDTVRKMRAHGGFRGGFEFQKPASEGYYRELPKRVGANALSPEQFKEVEELGLLVDKDDQGVLIQVFTKPVGDRPTVFIEIIQRIGCMREVGGEEAKEKK-----------------MEQAAGCGGFGKGNFSELFKSIENFERTLKV 440
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A061QYI8_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QYI8_9CHLO) HSP 1 Score: 288 bits (737), Expect = 1.280e-85 Identity = 152/267 (56.93%), Postives = 190/267 (71.16%), Query Frame = 3
Query: 870 GGSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRI-PSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
GG+ + + ++ GFGL RLDHAV NV DLLE V+++ ITG HEF+EF + DVGT++SGLNS+VLAN+ E VL+P+NEPTFGT +KSQIQT+LEQN G GLQHLALKTDDI RT+R M + S GGF+FM AYY +P +I SLT +Q +EELGLL D+DD+G L+Q+FTKPVGDRPTLFLEIIQRIGC+ E T E ++ + + +AP E ++Q GCGGFG GNF LF+SIE YE TL V
Sbjct: 189 GGTFKGPGIAGYKAEAPPEGSTGFGLNRLDHAVGNVHDLLEQVNYMEKITGFHEFAEFTAEDVGTVDSGLNSMVLANNSEFVLMPVNEPTFGTKRKSQIQTYLEQNEGPGLQHLALKTDDIFRTIRAMRSAS--GGFDFMPRASDAYYAKLPEKIGDSLTPEQYKEVEELGLLADKDDQGVLLQVFTKPVGDRPTLFLEIIQRIGCMHEPT---EDERAHTVPSIGVNAP-QELPPLIQSAGCGGFGKGNFNELFKSIEEYEKTLDV 449
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: L8HJ93_ACACA (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJ93_ACACA) HSP 1 Score: 286 bits (731), Expect = 4.090e-85 Identity = 143/259 (55.21%), Postives = 186/259 (71.81%), Query Frame = 3
Query: 891 FLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRI-PSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLA 1664
FLP +E V + R +G++R+DHAV NV +L+E +D++A ITG HEF+EF + DVGT++SGLNS+V+A++ E VLLP NEPTFGT +KSQIQT+LEQN G GLQHLALKTDDI T+R + A ++LGGF+FM P PAYY+N+P +I +LT DQ +EELGLL D+DD+G L+QIFTKP DRPT F+EIIQRIGC+ + ++K + + Q GCGGFG GNF LF+SIE+YE TL
Sbjct: 183 FLPGYETVTDQGPRLNYGIKRIDHAVGNVHNLIEQIDYVAKITGWHEFAEFTAEDVGTVDSGLNSMVMASNNEMVLLPFNEPTFGTKRKSQIQTYLEQNDGEGLQHLALKTDDIFATMRKLKAATNLGGFDFMPPASPAYYKNLPEKIGDALTPDQYKELEELGLLADKDDQGVLLQIFTKPCSDRPTFFIEIIQRIGCMTK----NQKGEEE------------------QTGGCGGFGKGNFSELFKSIEDYEKTLT 419
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: W7TNB7_9STRA (4-hydroxyphenylpyruvate dioxygenase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB7_9STRA) HSP 1 Score: 286 bits (732), Expect = 8.910e-85 Identity = 150/280 (53.57%), Postives = 194/280 (69.29%), Query Frame = 3
Query: 834 GSSASKARRVRRGGSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS--LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
G+ A R G D FLPN+++ P + +GLQR+DH V NV LL V+HL +TG+HE++EF S DVGT++SGLNS+VLA++ E VLLP+NEPTFGT +KSQIQT+LEQN GAG+QH+ALKTD+I T+R + + LGGF+FM P YY+++P +I LT+++LA +EELGLLVD+DD+G L+Q+FT+PVGDRPTLFLEIIQR+GC V+ G K +P AP GCGGFG GNF LF+SIE YE TL V
Sbjct: 203 GNDAEVVLRFVSGDFDG-PFLPNYQETP--IPPLSYGLQRIDHVVSNVPQLLPVVNHLMEMTGLHEYAEFTSTDVGTVDSGLNSLVLASNNERVLLPVNEPTFGTKRKSQIQTYLEQNQGAGVQHIALKTDNIFATMRELKKRTHLGGFDFMPKASPEYYQSLPAKIGPGVLTDEELACVEELGLLVDKDDQGVLLQVFTRPVGDRPTLFLEIIQRVGCTVDKEG----------KRLPEQAP-----------GCGGFGKGNFSELFKSIEEYEKTLNV 458
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: C1MJF3_MICPC (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MJF3_MICPC) HSP 1 Score: 285 bits (730), Expect = 1.270e-84 Identity = 153/266 (57.52%), Postives = 188/266 (70.68%), Query Frame = 3
Query: 888 SFLPNFEDVPQRVAREG---FGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSD-LGGFEFMEPPGPAYYRNVPNRI--PSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
+FLP +EDVP +GLQRLDHAV NV +LLE+VD++ ++TGMHEF+EF + DVGT++SGLNS+VLAND E +LLP+NEPTFGT +KSQIQT+LE N GAGLQHLALK+DD+ TVR M + GGFEF +P YY N+ R+ +LTE Q +EELGLLVD DD+G L+QIFTKP+GDRPT+F+EIIQRIGC+ E V ADA +E Q GCGGFG GNF LF+SIENYE TL +
Sbjct: 198 TFLPGYEDVPLEPPHTTPLTYGLQRLDHAVGNVPNLLETVDYITAMTGMHEFAEFTAEDVGTVDSGLNSMVLANDDEMILLPVNEPTFGTKRKSQIQTYLECNNGAGLQHLALKSDDVFATVREMRKHGGGRGGFEFQKPASADYYANLKARVGEDALTERQFKEVEELGLLVDRDDQGVLVQIFTKPLGDRPTVFIEIIQRIGCLRE--------------VKSADANAPPRIE--QAGGCGGFGKGNFSELFKSIENYERTLKM 447
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A1Y1HN93_KLENI (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HN93_KLENI) HSP 1 Score: 282 bits (721), Expect = 1.410e-83 Identity = 143/258 (55.43%), Postives = 185/258 (71.71%), Query Frame = 3
Query: 891 FLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS-LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTL 1661
FLPN+E P + + +GLQRLDHAV NV LLE++D+LA+ TG HEF+EF + D+GT++SGLNS+VLA++ E V++P+NEPTFGT +KSQIQT+LE N G GLQHLALK DDI T+R M +++GGFEFM P YY+N+P ++ S LT +QL +ELG+LVD+DD+G L+QIFTKP+GDRPT+F+EIIQRIGC E G +M Q+ GCGGFG GNF LF+SIE+YE TL
Sbjct: 190 FLPNYE--PVQSFQLSYGLQRLDHAVGNVPHLLETIDYLANATGFHEFAEFTAEDIGTVDSGLNSMVLASNNERVIMPVNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKCDDIFTTLREMRQRTEVGGFEFMPRPSENYYKNLPEKVGSDLTPEQLKECQELGILVDKDDQGILLQIFTKPLGDRPTIFIEIIQRIGCTYEENG-----------------------KMEQKGGCGGFGKGNFSELFKSIEDYERTL 422
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A835S0Y4_VANPL (4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S0Y4_VANPL) HSP 1 Score: 282 bits (722), Expect = 1.970e-83 Identity = 146/266 (54.89%), Postives = 181/266 (68.05%), Query Frame = 3
Query: 879 DRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS-LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAVGE 1673
D SFLP FEDVP FG++RLDHAV NV DL +V ++AS TG HEF+EF + DVGT SGLNS+VLAN+ ETVL+P+NEP G ++SQIQTFL+ N GAG+QHLAL TDD+LRT+R M A S +GGF+FM P P YY N+ R L+E+Q+ EE+G+LVD DD+G L+QIFTKPVGDRPT+FLEIIQRIGC++ KD+ + Q+ GCGGFG GNF LF SIE+YE L +
Sbjct: 199 DSPSFLPGFEDVPAPSPTFSFGIRRLDHAVGNVDDLASAVSYVASFTGFHEFAEFTATDVGTAESGLNSVVLANNEETVLIPMNEPVHGMKRRSQIQTFLDHNTGAGVQHLALATDDVLRTLREMRARSRMGGFDFMPSPPPTYYANLRRRAGDVLSEEQIKECEEIGVLVDRDDQGVLLQIFTKPVGDRPTIFLEIIQRIGCMM-------KDEEGKA---------------YQKGGCGGFGKGNFSELFRSIEDYEKLLEAKQ 442
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A835XEL1_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XEL1_9CHLO) HSP 1 Score: 281 bits (718), Expect = 4.720e-83 Identity = 144/267 (53.93%), Postives = 186/267 (69.66%), Query Frame = 3
Query: 873 GSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS-LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEML-QRPGCGGFGLGNFKALFESIENYETTLAV 1667
G + +L +E +P+ +A + FG++R+DHAV N DL+++V+++ TG HEF+EF + DVGT++SGLNS+VLA++ E VLLP+NEPTFGT +KSQIQT+LEQN G GLQHLAL TDDI T+R M SD+GGFEFM P YYRN+P +I LT +Q EELG+LVD+DD+G L+QIFTKP+GDRPT+F+EIIQR+GC+ E P AV Q GCGGFG GNF LF+SIE+YE TL V
Sbjct: 185 GDFKGPYLAGYEALPE-IAAQSFGIRRVDHAVGNTHDLIKAVEYVIGFTGFHEFAEFVAEDVGTVDSGLNSMVLASNNEAVLLPINEPTFGTPRKSQIQTYLEQNEGPGLQHLALMTDDIFHTLREMRKRSDVGGFEFMPKPSDKYYRNLPKKIGDVLTPEQYKECEELGILVDKDDQGVLLQIFTKPLGDRPTIFIEIIQRVGCMREVR-----------------EPATNAVVGTEQAAGCGGFGKGNFSELFKSIEDYERTLNV 433 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1248.1877.1 >prot_F-serratus_M_contig1248.1877.1 ID=prot_F-serratus_M_contig1248.1877.1|Name=mRNA_F-serratus_M_contig1248.1877.1|organism=Fucus serratus male|type=polypeptide|length=218bp MHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTback to top mRNA from alignment at F-serratus_M_contig1248:130300..134887- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1248.1877.1 ID=mRNA_F-serratus_M_contig1248.1877.1|Name=mRNA_F-serratus_M_contig1248.1877.1|organism=Fucus serratus male|type=mRNA|length=4588bp|location=Sequence derived from alignment at F-serratus_M_contig1248:130300..134887- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1248:130300..134887- >mRNA_F-serratus_M_contig1248.1877.1 ID=mRNA_F-serratus_M_contig1248.1877.1|Name=mRNA_F-serratus_M_contig1248.1877.1|organism=Fucus serratus male|type=CDS|length=1308bp|location=Sequence derived from alignment at F-serratus_M_contig1248:130300..134887- (Fucus serratus male)back to top |