mRNA_F-serratus_M_contig1248.1877.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1248.1877.1
Unique NamemRNA_F-serratus_M_contig1248.1877.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: D7FI72_ECTSI (4-hydroxyphenylpyruvate dioxygenase, plastid n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI72_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 3.600e-114
Identity = 189/297 (63.64%), Postives = 219/297 (73.74%), Query Frame = 3
Query:  801 LRYEPWETWCCGSSASKARRVRRGGSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPSLTEDQLAGIEELGLLVDED-DEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGA------EAVEMLQRPGCGGFGLGNFKALFESIENYETTLAVG 1670
            + +EP            A+    GG    +FLPNF D+    ARE FGLQR DH V NVWD+LE  +++ S+TGMHEF+EFA+ADVGT++SGLNSIVLA++ E VLLPLNEPTFGTAKKSQIQTFLEQN G GLQH+ALKT+DI RT+R M ANS LGGFEFMEPPG +YYR+VP RIPSLTEDQL  +EELGLL D+D D+G L+Q+FTKPVGDRPTLF EIIQRIGC  EAT    +  R        D  G       E  E+LQR GCGGFGLGNFKALFESIE YE+TLA+G
Sbjct:  217 ISFEPESKMVGEGDIGGAKGGGDGGRFEGAFLPNFVDIEGEEAREDFGLQRADHVVGNVWDMLEQGEYMTSMTGMHEFAEFAAADVGTVDSGLNSIVLASNNEMVLLPLNEPTFGTAKKSQIQTFLEQNDGPGLQHIALKTNDIFRTMRLMRANSGLGGFEFMEPPGASYYRDVPRRIPSLTEDQLRQLEELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNEGDRGVFGPADEDERGVRVSSRVEEGELLQRGGCGGFGLGNFKALFESIEKYESTLAIG 513          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A835YZ91_9STRA (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ91_9STRA)

HSP 1 Score: 298 bits (763), Expect = 1.470e-89
Identity = 148/266 (55.64%), Postives = 198/266 (74.44%), Query Frame = 3
Query:  888 SFLPNFEDV--PQRVAREG----FGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
            +FLP F+D+  P+    E     +G++R+DHAV NVWD++E+V+ L  +TGMH F+EF + DVGT++SGLNS+VLA++ E VLLPLNEPT+GT +KSQIQT+LEQN G GLQHLALKT+DI+ T+R M   S +GGFEF++ PG AYY ++P R+P LT  Q++ ++ELG+L D+DD+G L+QIFTKP GDRPT F+EIIQRIGC             D +++     PG + V+M+QR GCGGFG GNF+ALF+SIE+YE  L V
Sbjct:  191 AFLPGFQDISAPKGAGGEAWPATYGIERVDHAVGNVWDMMEAVERLGGMTGMHRFAEFTAEDVGTVDSGLNSVVLASNNEVVLLPLNEPTYGTKRKSQIQTYLEQNVGPGLQHLALKTNDIIGTLRLMKERSHMGGFEFLDAPGEAYYSDLPARVPELTPQQVSELQELGVLADKDDQGILLQIFTKPCGDRPTFFIEIIQRIGC------------EDAVEL-----PGGQ-VQMVQRGGCGGFGKGNFRALFKSIEDYEKKLGV 438          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: C1DZE9_MICCC (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZE9_MICCC)

HSP 1 Score: 288 bits (737), Expect = 1.010e-85
Identity = 152/264 (57.58%), Postives = 189/264 (71.59%), Query Frame = 3
Query:  894 LPNFEDVPQRVAREG---FGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDL-GGFEFMEPPGPAYYRNVPNRIPS--LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
            LP +E VP   A      +GL+RLDHAV NV DLLE+VD++++ TGMHEF+EF + DVGT++SGLNS+VLAN+ E VLLP+NEPTFGT +KSQIQT+LEQN G GLQHLALKTD+I  TVR M A+    GGFEF +P    YYR +P R+ +  L+ +Q   +EELGLLVD+DD+G LIQ+FTKPVGDRPT+F+EIIQRIGC+ E  G   K+++                 M Q  GCGGFG GNF  LF+SIEN+E TL V
Sbjct:  194 LPRYEPVPIEPAGSEPLCYGLRRLDHAVGNVHDLLETVDYISNFTGMHEFAEFTAEDVGTVDSGLNSMVLANNSEYVLLPVNEPTFGTKRKSQIQTYLEQNKGPGLQHLALKTDNIFDTVRKMRAHGGFRGGFEFQKPASEGYYRELPKRVGANALSPEQFKEVEELGLLVDKDDQGVLIQVFTKPVGDRPTVFIEIIQRIGCMREVGGEEAKEKK-----------------MEQAAGCGGFGKGNFSELFKSIENFERTLKV 440          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A061QYI8_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QYI8_9CHLO)

HSP 1 Score: 288 bits (737), Expect = 1.280e-85
Identity = 152/267 (56.93%), Postives = 190/267 (71.16%), Query Frame = 3
Query:  870 GGSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRI-PSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
            GG+ +   +  ++         GFGL RLDHAV NV DLLE V+++  ITG HEF+EF + DVGT++SGLNS+VLAN+ E VL+P+NEPTFGT +KSQIQT+LEQN G GLQHLALKTDDI RT+R M + S  GGF+FM     AYY  +P +I  SLT +Q   +EELGLL D+DD+G L+Q+FTKPVGDRPTLFLEIIQRIGC+ E T   E ++   +  +  +AP  E   ++Q  GCGGFG GNF  LF+SIE YE TL V
Sbjct:  189 GGTFKGPGIAGYKAEAPPEGSTGFGLNRLDHAVGNVHDLLEQVNYMEKITGFHEFAEFTAEDVGTVDSGLNSMVLANNSEFVLMPVNEPTFGTKRKSQIQTYLEQNEGPGLQHLALKTDDIFRTIRAMRSAS--GGFDFMPRASDAYYAKLPEKIGDSLTPEQYKEVEELGLLADKDDQGVLLQVFTKPVGDRPTLFLEIIQRIGCMHEPT---EDERAHTVPSIGVNAP-QELPPLIQSAGCGGFGKGNFNELFKSIEEYEKTLDV 449          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: L8HJ93_ACACA (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJ93_ACACA)

HSP 1 Score: 286 bits (731), Expect = 4.090e-85
Identity = 143/259 (55.21%), Postives = 186/259 (71.81%), Query Frame = 3
Query:  891 FLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRI-PSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLA 1664
            FLP +E V  +  R  +G++R+DHAV NV +L+E +D++A ITG HEF+EF + DVGT++SGLNS+V+A++ E VLLP NEPTFGT +KSQIQT+LEQN G GLQHLALKTDDI  T+R + A ++LGGF+FM P  PAYY+N+P +I  +LT DQ   +EELGLL D+DD+G L+QIFTKP  DRPT F+EIIQRIGC+ +    ++K + +                  Q  GCGGFG GNF  LF+SIE+YE TL 
Sbjct:  183 FLPGYETVTDQGPRLNYGIKRIDHAVGNVHNLIEQIDYVAKITGWHEFAEFTAEDVGTVDSGLNSMVMASNNEMVLLPFNEPTFGTKRKSQIQTYLEQNDGEGLQHLALKTDDIFATMRKLKAATNLGGFDFMPPASPAYYKNLPEKIGDALTPDQYKELEELGLLADKDDQGVLLQIFTKPCSDRPTFFIEIIQRIGCMTK----NQKGEEE------------------QTGGCGGFGKGNFSELFKSIEDYEKTLT 419          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: W7TNB7_9STRA (4-hydroxyphenylpyruvate dioxygenase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB7_9STRA)

HSP 1 Score: 286 bits (732), Expect = 8.910e-85
Identity = 150/280 (53.57%), Postives = 194/280 (69.29%), Query Frame = 3
Query:  834 GSSASKARRVRRGGSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS--LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
            G+ A    R   G  D   FLPN+++ P  +    +GLQR+DH V NV  LL  V+HL  +TG+HE++EF S DVGT++SGLNS+VLA++ E VLLP+NEPTFGT +KSQIQT+LEQN GAG+QH+ALKTD+I  T+R +   + LGGF+FM    P YY+++P +I    LT+++LA +EELGLLVD+DD+G L+Q+FT+PVGDRPTLFLEIIQR+GC V+  G          K +P  AP           GCGGFG GNF  LF+SIE YE TL V
Sbjct:  203 GNDAEVVLRFVSGDFDG-PFLPNYQETP--IPPLSYGLQRIDHVVSNVPQLLPVVNHLMEMTGLHEYAEFTSTDVGTVDSGLNSLVLASNNERVLLPVNEPTFGTKRKSQIQTYLEQNQGAGVQHIALKTDNIFATMRELKKRTHLGGFDFMPKASPEYYQSLPAKIGPGVLTDEELACVEELGLLVDKDDQGVLLQVFTRPVGDRPTLFLEIIQRVGCTVDKEG----------KRLPEQAP-----------GCGGFGKGNFSELFKSIEEYEKTLNV 458          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: C1MJF3_MICPC (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MJF3_MICPC)

HSP 1 Score: 285 bits (730), Expect = 1.270e-84
Identity = 153/266 (57.52%), Postives = 188/266 (70.68%), Query Frame = 3
Query:  888 SFLPNFEDVPQRVAREG---FGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSD-LGGFEFMEPPGPAYYRNVPNRI--PSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAV 1667
            +FLP +EDVP          +GLQRLDHAV NV +LLE+VD++ ++TGMHEF+EF + DVGT++SGLNS+VLAND E +LLP+NEPTFGT +KSQIQT+LE N GAGLQHLALK+DD+  TVR M  +    GGFEF +P    YY N+  R+   +LTE Q   +EELGLLVD DD+G L+QIFTKP+GDRPT+F+EIIQRIGC+ E              V  ADA     +E  Q  GCGGFG GNF  LF+SIENYE TL +
Sbjct:  198 TFLPGYEDVPLEPPHTTPLTYGLQRLDHAVGNVPNLLETVDYITAMTGMHEFAEFTAEDVGTVDSGLNSMVLANDDEMILLPVNEPTFGTKRKSQIQTYLECNNGAGLQHLALKSDDVFATVREMRKHGGGRGGFEFQKPASADYYANLKARVGEDALTERQFKEVEELGLLVDRDDQGVLVQIFTKPLGDRPTVFIEIIQRIGCLRE--------------VKSADANAPPRIE--QAGGCGGFGKGNFSELFKSIENYERTLKM 447          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A1Y1HN93_KLENI (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HN93_KLENI)

HSP 1 Score: 282 bits (721), Expect = 1.410e-83
Identity = 143/258 (55.43%), Postives = 185/258 (71.71%), Query Frame = 3
Query:  891 FLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS-LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTL 1661
            FLPN+E  P +  +  +GLQRLDHAV NV  LLE++D+LA+ TG HEF+EF + D+GT++SGLNS+VLA++ E V++P+NEPTFGT +KSQIQT+LE N G GLQHLALK DDI  T+R M   +++GGFEFM  P   YY+N+P ++ S LT +QL   +ELG+LVD+DD+G L+QIFTKP+GDRPT+F+EIIQRIGC  E  G                       +M Q+ GCGGFG GNF  LF+SIE+YE TL
Sbjct:  190 FLPNYE--PVQSFQLSYGLQRLDHAVGNVPHLLETIDYLANATGFHEFAEFTAEDIGTVDSGLNSMVLASNNERVIMPVNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKCDDIFTTLREMRQRTEVGGFEFMPRPSENYYKNLPEKVGSDLTPEQLKECQELGILVDKDDQGILLQIFTKPLGDRPTIFIEIIQRIGCTYEENG-----------------------KMEQKGGCGGFGKGNFSELFKSIEDYERTL 422          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A835S0Y4_VANPL (4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S0Y4_VANPL)

HSP 1 Score: 282 bits (722), Expect = 1.970e-83
Identity = 146/266 (54.89%), Postives = 181/266 (68.05%), Query Frame = 3
Query:  879 DRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS-LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFKALFESIENYETTLAVGE 1673
            D  SFLP FEDVP       FG++RLDHAV NV DL  +V ++AS TG HEF+EF + DVGT  SGLNS+VLAN+ ETVL+P+NEP  G  ++SQIQTFL+ N GAG+QHLAL TDD+LRT+R M A S +GGF+FM  P P YY N+  R    L+E+Q+   EE+G+LVD DD+G L+QIFTKPVGDRPT+FLEIIQRIGC++       KD+  +                 Q+ GCGGFG GNF  LF SIE+YE  L   +
Sbjct:  199 DSPSFLPGFEDVPAPSPTFSFGIRRLDHAVGNVDDLASAVSYVASFTGFHEFAEFTATDVGTAESGLNSVVLANNEETVLIPMNEPVHGMKRRSQIQTFLDHNTGAGVQHLALATDDVLRTLREMRARSRMGGFDFMPSPPPTYYANLRRRAGDVLSEEQIKECEEIGVLVDRDDQGVLLQIFTKPVGDRPTIFLEIIQRIGCMM-------KDEEGKA---------------YQKGGCGGFGKGNFSELFRSIEDYEKLLEAKQ 442          
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Match: A0A835XEL1_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XEL1_9CHLO)

HSP 1 Score: 281 bits (718), Expect = 4.720e-83
Identity = 144/267 (53.93%), Postives = 186/267 (69.66%), Query Frame = 3
Query:  873 GSDRWSFLPNFEDVPQRVAREGFGLQRLDHAVLNVWDLLESVDHLASITGMHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQTFLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNVPNRIPS-LTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQRIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEML-QRPGCGGFGLGNFKALFESIENYETTLAV 1667
            G  +  +L  +E +P+ +A + FG++R+DHAV N  DL+++V+++   TG HEF+EF + DVGT++SGLNS+VLA++ E VLLP+NEPTFGT +KSQIQT+LEQN G GLQHLAL TDDI  T+R M   SD+GGFEFM  P   YYRN+P +I   LT +Q    EELG+LVD+DD+G L+QIFTKP+GDRPT+F+EIIQR+GC+ E                    P   AV    Q  GCGGFG GNF  LF+SIE+YE TL V
Sbjct:  185 GDFKGPYLAGYEALPE-IAAQSFGIRRVDHAVGNTHDLIKAVEYVIGFTGFHEFAEFVAEDVGTVDSGLNSMVLASNNEAVLLPINEPTFGTPRKSQIQTYLEQNEGPGLQHLALMTDDIFHTLREMRKRSDVGGFEFMPKPSDKYYRNLPKKIGDVLTPEQYKECEELGILVDKDDQGVLLQIFTKPLGDRPTIFIEIIQRVGCMREVR-----------------EPATNAVVGTEQAAGCGGFGKGNFSELFKSIEDYERTLNV 433          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1248.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI72_ECTSI3.600e-11463.644-hydroxyphenylpyruvate dioxygenase, plastid n=2 T... [more]
A0A835YZ91_9STRA1.470e-8955.644-hydroxyphenylpyruvate dioxygenase n=1 Tax=Tribon... [more]
C1DZE9_MICCC1.010e-8557.584-hydroxyphenylpyruvate dioxygenase n=1 Tax=Microm... [more]
A0A061QYI8_9CHLO1.280e-8556.934-hydroxyphenylpyruvate dioxygenase n=2 Tax=Tetras... [more]
L8HJ93_ACACA4.090e-8555.214-hydroxyphenylpyruvate dioxygenase n=1 Tax=Acanth... [more]
W7TNB7_9STRA8.910e-8553.574-hydroxyphenylpyruvate dioxygenase n=3 Tax=Monodo... [more]
C1MJF3_MICPC1.270e-8457.524-hydroxyphenylpyruvate dioxygenase n=1 Tax=Microm... [more]
A0A1Y1HN93_KLENI1.410e-8355.434-hydroxyphenylpyruvate dioxygenase n=1 Tax=Klebso... [more]
A0A835S0Y4_VANPL1.970e-8354.894-hydroxyphenylpyruvate dioxygenase n=2 Tax=Vanill... [more]
A0A835XEL1_9CHLO4.720e-8353.934-hydroxyphenylpyruvate dioxygenase n=1 Tax=Edapho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1248contigF-serratus_M_contig1248:130300..134887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.9
Seed ortholog evalue1.9e-81
Seed eggNOG ortholog2880.D7FI72
KEGG rclassRC00505,RC00738
KEGG koko:K00457
KEGG ReactionR01372,R02521
KEGG Pathwayko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100
KEGG ModuleM00044
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0019439,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.4-hydroxyphenylpyruvate dioxygenase activity
EggNOG OGsCOG3185@1,KOG0638@2759
Ec32 ortholog description4-hydroxyphenylpyruvate dioxygenase, plastid precursor
Ec32 orthologEc-23_003630.2
EC1.13.11.27
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s2_g9516_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons5
Model size2369
Cds size654
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.3082159-UTR-F-serratus_M_contig1248:130299..1309921622929174.3082159-UTR-F-serratus_M_contig1248:130299..130992Fucus serratus maleUTRF-serratus_M_contig1248 130300..130992 -
1690962736.820011-UTR-F-serratus_M_contig1248:130299..1309921690962736.820011-UTR-F-serratus_M_contig1248:130299..130992Fucus serratus maleUTRF-serratus_M_contig1248 130300..130992 -
1622929174.3874032-UTR-F-serratus_M_contig1248:133395..1334221622929174.3874032-UTR-F-serratus_M_contig1248:133395..133422Fucus serratus maleUTRF-serratus_M_contig1248 133396..133422 -
1690962736.861659-UTR-F-serratus_M_contig1248:133395..1334221690962736.861659-UTR-F-serratus_M_contig1248:133395..133422Fucus serratus maleUTRF-serratus_M_contig1248 133396..133422 -
1622929174.4001534-UTR-F-serratus_M_contig1248:133892..1348871622929174.4001534-UTR-F-serratus_M_contig1248:133892..134887Fucus serratus maleUTRF-serratus_M_contig1248 133893..134887 -
1690962736.8716464-UTR-F-serratus_M_contig1248:133892..1348871690962736.8716464-UTR-F-serratus_M_contig1248:133892..134887Fucus serratus maleUTRF-serratus_M_contig1248 133893..134887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929174.3218625-CDS-F-serratus_M_contig1248:130992..1312981622929174.3218625-CDS-F-serratus_M_contig1248:130992..131298Fucus serratus maleCDSF-serratus_M_contig1248 130993..131298 -
1690962736.829911-CDS-F-serratus_M_contig1248:130992..1312981690962736.829911-CDS-F-serratus_M_contig1248:130992..131298Fucus serratus maleCDSF-serratus_M_contig1248 130993..131298 -
1622929174.3353033-CDS-F-serratus_M_contig1248:131807..1319661622929174.3353033-CDS-F-serratus_M_contig1248:131807..131966Fucus serratus maleCDSF-serratus_M_contig1248 131808..131966 -
1690962736.8376117-CDS-F-serratus_M_contig1248:131807..1319661690962736.8376117-CDS-F-serratus_M_contig1248:131807..131966Fucus serratus maleCDSF-serratus_M_contig1248 131808..131966 -
1622929174.3515377-CDS-F-serratus_M_contig1248:132500..1325991622929174.3515377-CDS-F-serratus_M_contig1248:132500..132599Fucus serratus maleCDSF-serratus_M_contig1248 132501..132599 -
1690962736.8459644-CDS-F-serratus_M_contig1248:132500..1325991690962736.8459644-CDS-F-serratus_M_contig1248:132500..132599Fucus serratus maleCDSF-serratus_M_contig1248 132501..132599 -
1622929174.3742518-CDS-F-serratus_M_contig1248:133305..1333951622929174.3742518-CDS-F-serratus_M_contig1248:133305..133395Fucus serratus maleCDSF-serratus_M_contig1248 133306..133395 -
1690962736.8539765-CDS-F-serratus_M_contig1248:133305..1333951690962736.8539765-CDS-F-serratus_M_contig1248:133305..133395Fucus serratus maleCDSF-serratus_M_contig1248 133306..133395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1248.1877.1prot_F-serratus_M_contig1248.1877.1Fucus serratus malepolypeptideF-serratus_M_contig1248 130993..133395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1248.1877.1

>prot_F-serratus_M_contig1248.1877.1 ID=prot_F-serratus_M_contig1248.1877.1|Name=mRNA_F-serratus_M_contig1248.1877.1|organism=Fucus serratus male|type=polypeptide|length=218bp
MHEFSEFASADVGTINSGLNSIVLANDRETVLLPLNEPTFGTAKKSQIQT
FLEQNGGAGLQHLALKTDDILRTVRHMHANSDLGGFEFMEPPGPAYYRNV
PNRIPSLTEDQLAGIEELGLLVDEDDEGALIQIFTKPVGDRPTLFLEIIQ
RIGCVVEATGLSEKDQRDRIKVVPADAPGAEAVEMLQRPGCGGFGLGNFK
ALFESIENYETTLAVGE*
back to top

mRNA from alignment at F-serratus_M_contig1248:130300..134887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1248.1877.1 ID=mRNA_F-serratus_M_contig1248.1877.1|Name=mRNA_F-serratus_M_contig1248.1877.1|organism=Fucus serratus male|type=mRNA|length=4588bp|location=Sequence derived from alignment at F-serratus_M_contig1248:130300..134887- (Fucus serratus male)
GCATGGCGGGCAGGGTAAAGGGAAAATGTATACTCAGTGTATGTATAGTT TCACATTTGAAAAAAATGTACTCCGAGTATACGGTACTGTAGCAAAAGAG AGAAGGCGATAATATGGGATCGGGAGGACACAGTAAAAACTTGGCTTGAC TTCGAGTATGGGGTTTGCCAAGCCCCCCCCCCAAAAGCGAGAAAAATATC GTTTCAACTCCCTTCAGTTGAGCTGTTGTAGGTGGGTGCGTGTATCCATG CATCGATGTTTAGGGCAAAATGTGACAGATGGACTTGGCTCTAGCTCGTT TATTTTATCGAGCTTTTACAACAGCTTCGTGCGTTCTTTCGGGGTCGAAA CGTCATTGGTCGGATCCGCTCCTGATGGAGAACGCGCGTGAGCTTTGGAA AAAACACCAAACTCGGCATGAGATTTTTCTCCCACAGGAAATGTATGTCA GGTTTTGTGCTCCCTTCACCGGGTGTCCCATGCAGAGCTTGCATCAGACT CAAGCACTTTTTTCTTGCTTTGATTCCTTTTTTTTTGTGTGCCAAAGGTG ACGCCAAATCTAATGCATCCCACGCTGTGCCGCACGAATGCGTTTGCTGC CACCGCCGCCCCTCCCCTCCGCCTACGACCCTGCGCCCTCCGACGGCGCT CCCGGTACCCCGCCGAGACCCGGAAGGCGGTCGGGATCGAGGTGGAGGAC GCAGAAAGCGCCTACGAGCAGTGCACGGCCCACGGGGCGGTTGGCGTCCA GGCCCCCACGCGCGTCGTCGACCGAGACGGTCGGGGAGAAGCGGTGATCT CTGAGGTACGAGCCGTGGGAAACGTGGTGCTGCGGTTCATCAGCTTCGAA AGCGCGAAGGGTTCGTCGGGGGGGGTCTGACCGTTGGTCCTTCTTGCCCA ACTTTGAAGACGTGCCGCAGCGAGTCGCGAGGGAAGGCTTCGGTCTGCAA CGACTCGACCACGCCGTGCTCAACGTGTGGGATCTGTTGGAGTCGGTGAG GCAAAATCGTTCTCATCAAGCCCTTCGCTACGGGACCTCCGCTTAAGTTT TTTTGTTTGTTTGCGAAAGGCAGCAGTCGCTAGGCTTTCGCTCTGTTAGG AATATAGTCTACCGTCTCTGCGCTTGAAGGAAGACTCTTCCTCTTCTCGC AGATTTTTTATATTTAATATTTAGGAGGAAAAAAACAATCCGGAATACAC AAAAATGGCTGGTGATTTGGGGTGTGGCCCGAGAACACGCGCACGTCGTC GTCGACACGAGATATGGAGGCACAAAAAAAATAGAAGCAGCACAGCTGTG GATCGGTCGTCACACGAGTGCACACGTATTTATTGGGAGGAGCTTGACCC AAAACGTTCTTGCGTTGGGAGAGAGACGGTGACTGCGACTATGACTGTTG AACGAAGCCAGCTCAAACTCCTAAAAAAGCTCTTGAAACCCTCGAAAAAA TATGATAACTGTAAGGTGGATCATCTGGCGAGCATCACGGGTATGCACGA GTTCTCAGAATTTGCTTCGGCGGACGTGGGCACGATCAACAGCGGGCTCA ATAGTATCGTCCTGGCCAACGACCGCGAGACGGTGAGTCATGAGTCATAC TTTCAACATGCCCACTTCATACCAATAGTGGGCGTGGGAAAGAGAGGCGT ATATTCATTGGTCCATGGTGACCTGCTAAGGCACCACTCGTTCGGAACTA CCTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCG TCGGTACGCAATTGCGCGACCCGATAAACTTGGGACTGACCCGATGGCGT ATGGCGGTTTAAAATAAATATATGGATGCCATCGCGGTCCTCGGGAGGAA TCCCGTAAGTTAAGCACCATATTCAGCCTGAGTATGGAGATGAGCAGGCT GACGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTTCTAGGC ACGAACGCGGGCAAGGGAATATTCATTTTCTCTGTTCAACTGACCACGAG CAGGATTGGCATCCTTACCACATTGATCCATCCCCTTGCTACATGTGTGG CCATACATACCTACACTACACATCCTGGTATAGAGATTTTCGCGTCGGAC ACGATGCCCCTCACAGTAATCTTAATATATACTTCTATATATATGATGGG TGTGTGCGTATTTATCAAATTGCACATAACCACGCAATCCTACCTTGTCA TCCTGCAATAGCCGCCTTGGTCCTCCTAGTTAATAATATGAGTGTGTGTC CTGTTCCTTTTTTTTCTTTTTCTTTCCTCCAATAATAGGTTCTGCTGCCT TTGAACGAGCCTACCTTCGGTACTGCGAAGAAGAGTCAGATACAAACGTT TTTGGAGCAGAATGGCGGGGCCGGTCTGCAGCACTTGGTGAATAGTATAG GGAAAAGTACAGTACCATAGAGGACGGAGTCGGCACACTCCTTTCCATGT CAACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCACCCTGCGAA ATTTAGAAGACATTTCTGTTCTAAAATTAACATTTTTAATATGTCTCGGG GCTCGTGAAAACGCCCCGGGGTCAGGTCGTACGAGCGTTTCACAACCCTG GCCCCCTGGGGTGTGCCTTTATACAGCAGTGATATGTGTACTTGCTATCA TCTCTCATATTTATAAATGAGGTGAGAGAGAACGCGAGGAGGGTTTTCAC CCATTGATGCATGTCACCGATAACCCTTGGTGGCATCATCAGTAAAAGAT CGTCTACGAAAGTTCCTGCTGTAAAAGCCATACTCTGGTTTTGAGTCTGT CAATTTGGTGTACGTCTCTCGCTCTGTTGATATTTGTTTTTTGTAACCGA TGTTTATCTGGTGTACATGTCTGTCGCTCGGTCTAATGGTGTCTGATTGG ACCAAAACGCTCCCTCGACAGGCGCTCAAGACGGACGACATCTTGAGGAC CGTCAGGCACATGCACGCGAACTCCGACCTCGGCGGCTTCGAGTTTATGG AGCCACCGGGGCCCGCATACTACCGTAACGTGCCCAACCGAATACCTTCT CTGACAGAGGACCAGCTTGCGGGAATCGAGGTGGGGGCGCAAGAAGTAAT CCATCACATCACGGTAGGGGGAGATGACAACCTGCCCCCTCTCGTGTCGA TTAGGAGGCGTTACCTCTGGCACCGTTTTTTTGGAGGGAAAACAAAAACA AAAACAAAAAGCCAAAACCTTTTAAGGGTCCCCAAGAGACGACCCGGCCG GGCAGGAATGTTTCATGATTCTTCTTATTTACACAAAATACTATTATAAA ACGAATCCCCTGTATTTCCATTTTAGTTGGAATATCGTGCCTTCTCATCG TGCACCGTTCATTTTTGATGGTCGGCCACTTACACCCGACCGTCCCCTGT TTATTTTTTATTTTTCATTTTTTACCTTCGTTTTTATTTTTAGCTTTTCT TTTTCTTTTTCGTTCTCAAACTCTTTTATTTTTGTAGCAAGTATAATTTT ACGCCATTTTTGACCTCATCCCTCGTATACATCTTCATAATTACTCGACC TTCTGACCCCTCCCCCCCCCCCCCAAAAAAAAAAAAAAGGAGCTAGGCCT CCTGGTTGACGAGGACGACGAAGGCGCTCTCATCCAGATCTTTACGAAAC CCGTGGGCGACCGACCGACGCTTTTCCTCGAGATCATCCAGCGCATCGGG TGCGTTGTGGAGGCCACCGGTTTGTCAGAGAAAGACCAAAGGGACCGCAT AAAAGTTGTCCCCGCCGATGCTCCCGGCGCCGAGGCCGTGGAGATGCTGC AGCGCCCGGGGTGCGGAGGCTTCGGCCTGGGTAACTTCAAGGCGCTCTTC GAGTCAATCGAGAATTATGAGACCACGCTAGCCGTTGGGGAGTAGTAAGA TTAAATGGGAGCCTGCCTCGATTTTGTTGTCTAGCTATAAACGAGAAGCT GTTTATTGCGATCGATTTTTGGAATTCTGTCCGTTTGGCTTTCTTTTTTT CCTGTCTGCAGCGCTTTTTACGTATGAAAGGTCCTAGGGAACATGCATGC GTTCTCGAGCGTCACACAAGAACCCAAGTGGCCACCCTTGGGAAGGTTGT TGTCTAGGCTGTCGGGGTAGTGTGTACATATGTAATTTGTCTCGTGCAAT CAGCGAGGGCGTGTGAACGAACGCCTACAGCAGGGGGCTCCATTTACCGC CGCCGGGTCGGCGCTTGCAAGAGTGTCGCGATTCATGTAAGCAGTGATGC CCGCCGTGCTTCTTAGTAGGCTCAACCTCCCATTTTATTGCGATCGATTT TTGGAATTATGTCCGTTTTTCTCTCTCTCTCTCCTGTTTGCAGCGGGTTT TACATATGCATAGTCCCAGGGAGCGTGCGTACGTTCTCGGGCGTCACACG AGAACCCAGGTGGACATGCTTGGGGAGGTTGCTGGCTAGGCTGTCGGGGG TTGATGACGTTGTTGTTGTTGTTGTTGTTGCTGCTGATGATTCACACATT CAGCGTCTTGTCCTTGCAACTGAAAGAACTACGGTGACACAACATGCCAG CCATAGACCTATCAAATGCTAATCCCGCTTATGGTCAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1248:130300..134887-

>mRNA_F-serratus_M_contig1248.1877.1 ID=mRNA_F-serratus_M_contig1248.1877.1|Name=mRNA_F-serratus_M_contig1248.1877.1|organism=Fucus serratus male|type=CDS|length=1308bp|location=Sequence derived from alignment at F-serratus_M_contig1248:130300..134887- (Fucus serratus male)
ATGCACGAGTTCTCAGAATTTGCTTCGGCGGACGTGGGCACGATCAACAG
CGGGCTCAATAGTATCGTCCTGGCCAACGACCGCGAGACGATGCACGAGT
TCTCAGAATTTGCTTCGGCGGACGTGGGCACGATCAACAGCGGGCTCAAT
AGTATCGTCCTGGCCAACGACCGCGAGACGGTTCTGCTGCCTTTGAACGA
GCCTACCTTCGGTACTGCGAAGAAGAGTCAGATACAAACGTTTTTGGAGC
AGAATGGCGGGGCCGGTCTGCAGCACTTGGTTCTGCTGCCTTTGAACGAG
CCTACCTTCGGTACTGCGAAGAAGAGTCAGATACAAACGTTTTTGGAGCA
GAATGGCGGGGCCGGTCTGCAGCACTTGGCGCTCAAGACGGACGACATCT
TGAGGACCGTCAGGCACATGCACGCGAACTCCGACCTCGGCGGCTTCGAG
TTTATGGAGCCACCGGGGCCCGCATACTACCGTAACGTGCCCAACCGAAT
ACCTTCTCTGACAGAGGACCAGCTTGCGGGAATCGAGGCGCTCAAGACGG
ACGACATCTTGAGGACCGTCAGGCACATGCACGCGAACTCCGACCTCGGC
GGCTTCGAGTTTATGGAGCCACCGGGGCCCGCATACTACCGTAACGTGCC
CAACCGAATACCTTCTCTGACAGAGGACCAGCTTGCGGGAATCGAGGAGC
TAGGCCTCCTGGTTGACGAGGACGACGAAGGCGCTCTCATCCAGATCTTT
ACGAAACCCGTGGGCGACCGACCGACGCTTTTCCTCGAGATCATCCAGCG
CATCGGGTGCGTTGTGGAGGCCACCGGTTTGTCAGAGAAAGACCAAAGGG
ACCGCATAAAAGTTGTCCCCGCCGATGCTCCCGGCGCCGAGGCCGTGGAG
ATGCTGCAGCGCCCGGGGTGCGGAGGCTTCGGCCTGGGTAACTTCAAGGC
GCTCTTCGAGTCAATCGAGAATTATGAGACCACGCTAGCCGTTGGGGAGT
AGGAGCTAGGCCTCCTGGTTGACGAGGACGACGAAGGCGCTCTCATCCAG
ATCTTTACGAAACCCGTGGGCGACCGACCGACGCTTTTCCTCGAGATCAT
CCAGCGCATCGGGTGCGTTGTGGAGGCCACCGGTTTGTCAGAGAAAGACC
AAAGGGACCGCATAAAAGTTGTCCCCGCCGATGCTCCCGGCGCCGAGGCC
GTGGAGATGCTGCAGCGCCCGGGGTGCGGAGGCTTCGGCCTGGGTAACTT
CAAGGCGCTCTTCGAGTCAATCGAGAATTATGAGACCACGCTAGCCGTTG
GGGAGTAG
back to top