mRNA_F-serratus_M_contig1239.1814.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.530e-32 Identity = 80/196 (40.82%), Postives = 106/196 (54.08%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLSIEC----VRTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAIILMEELDDVI-NVPREK-LWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPF--GAVGYARQSVREHKMAPK 564
++GG M+ S+GGN Y +I DDCTR+ V FLK KSDA A +ADY + ++ C RTD GGEF+G+F R I E TPP+TP+YNGVAERALGL + A+ + ++ + P LWA+A+ AC N + TT KSP EL+ G P PF V +R+ R A K
Sbjct: 200 NLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPFLKPLVFKSRRKARSQPRARK 392
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 122 bits (307), Expect = 2.160e-31 Identity = 79/194 (40.72%), Postives = 104/194 (53.61%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAIILMEELDDVI----NVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPK 564
D+ G + SLGG Y +I DD TR+ V FLK KSDA A +A+ S + VR+DNGGEF EGEF R + I E TP +P+Y+GVAERALGL + A+ + + N P LWA+A+ ++C+ N + TTS E KSPYE+W G P PF + + R HK PK
Sbjct: 40 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF-LIPAVYKVKRTHKSEPK 230
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.360e-31 Identity = 82/195 (42.05%), Postives = 102/195 (52.31%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLSIECV-RTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAII----LMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG MK S+GGN Y +I DD +R+ V FLK KSDA +ADY T C+ RTD GGEF+G+F R I E TPP TP+YNGVAERALGL + A+ + D N P LWA+A+ AC N + T S KS YE++ P PF + S R+ K PKGE
Sbjct: 27 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPG--LWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAVFK-SRRKAKSQPKGE 218
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 125 bits (313), Expect = 3.670e-31 Identity = 78/196 (39.80%), Postives = 111/196 (56.63%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG +S+GG +Y +I DD TR + FL+ KSDA +A + +A S +E VR+DNGG+F G+F + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ + SPYE+W+G+ P PF Y R R K+ PKGE
Sbjct: 98 DLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQ-RPSKLLPKGE 291
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 128 bits (322), Expect = 5.990e-31 Identity = 83/196 (42.35%), Postives = 111/196 (56.63%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG +S+GG +Y +I DD TR + FLK KSDA A S +A S +E VR+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ + KSPYE+W+G+ P PF Y R R K+ PKGE
Sbjct: 730 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPSKLLPKGE 923
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 128 bits (322), Expect = 6.040e-31 Identity = 83/196 (42.35%), Postives = 111/196 (56.63%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG +S+GG +Y +I DD TR + FLK KSDA A S +A S +E VR+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ + KSPYE+W+G+ P PF Y R R K+ PKGE
Sbjct: 437 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQ-RPSKLLPKGE 630
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 127 bits (319), Expect = 1.540e-30 Identity = 81/196 (41.33%), Postives = 111/196 (56.63%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG S+GG Y +I DD TR + FL+ KSDA +A S +A S +E VR+DNGGEF GEF + I E TP +PQYNGVAER LGL E A+ I + L + +P+ +KLWA+AM +AC+ N + ++ + KSPYE+W+G++ A PF Y + R K+ PKGE
Sbjct: 334 DLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQ-RPSKLFPKGE 527
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.960e-30 Identity = 82/198 (41.41%), Postives = 114/198 (57.58%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAV--GYARQSVREHKMAPKGE 570
D+GG +S+GG +Y +I DD TR + FLK KSDA +A S +A S +E VR+DNGGEF GEF + I E TP +PQYNGVAER LGL A+ I + L + +P+ ++LWA+AM +AC+ N + ++ + KSPYE+W G+ A+H RP+ + Y R R K+ PKGE
Sbjct: 636 DLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE---ASHARPYPFLKPAYCRWQ-RPSKLLPKGE 829
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 125 bits (315), Expect = 5.190e-30 Identity = 79/196 (40.31%), Postives = 114/196 (58.16%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKLS-IECVRTDNGGEF-EGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLTREKAI---ILMEELDDVINVPR-EKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG +S+GG +Y +I DD TR + FL+ KSDA +A S +A+ S IE VR+DNGGEF GEF + I E TP +P++NGVAER LGL E A+ I + L + +P+ ++LWA+AM +AC+ N + ++ + KSPYE+W+G++ A PF Y + R K+ PKGE
Sbjct: 481 DLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY-PFLKPAYCKWQ-RPSKLLPKGE 674
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 125 bits (313), Expect = 9.650e-30 Identity = 82/198 (41.41%), Postives = 102/198 (51.52%), Query Frame = 1
Query: 1 DVGGPMKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQ-KLSIECVRTDNGGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALG---LTREKAII----LMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGKSPTANHLRPFGAVGYARQSVREHKMAPKGE 570
D+GG MK S+GGN Y +I DD +R+ V FLK KSDA L +ADY T + RTD GGEF+G+F R I E TPP TP+YNGVAERALG L + A+ + D N P LWA+A+ AC N + T S KS YE++ P PF + S R+ K PKGE
Sbjct: 651 DLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPG--LWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKGE 845 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1239.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1239.1814.1 >prot_F-serratus_M_contig1239.1814.1 ID=prot_F-serratus_M_contig1239.1814.1|Name=mRNA_F-serratus_M_contig1239.1814.1|organism=Fucus serratus male|type=polypeptide|length=185bp MKHSSLGGNNYVVIFVDDCTRFKVVKFLKKKSDATTALLSLVADYITPQKback to top mRNA from alignment at F-serratus_M_contig1239:226341..226910- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1239.1814.1 ID=mRNA_F-serratus_M_contig1239.1814.1|Name=mRNA_F-serratus_M_contig1239.1814.1|organism=Fucus serratus male|type=mRNA|length=570bp|location=Sequence derived from alignment at F-serratus_M_contig1239:226341..226910- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1239:226341..226910- >mRNA_F-serratus_M_contig1239.1814.1 ID=mRNA_F-serratus_M_contig1239.1814.1|Name=mRNA_F-serratus_M_contig1239.1814.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig1239:226341..226910- (Fucus serratus male)back to top |