mRNA_F-serratus_M_contig1237.1795.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1237.1795.1
Unique NamemRNA_F-serratus_M_contig1237.1795.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 1.400e-132
Identity = 209/420 (49.76%), Postives = 292/420 (69.52%), Query Frame = 1
Query:   31 PIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            P+ SR YR NP VA++VD+I+++ L A +I+ S SPY++P+VV+ KK+G +RI  +YR+LN+   + Q PI R D+ LD L    ++S FDM S FHQI +  +++PL AF T+SGL+E+L +P G+S +PG F +V+ +V  +L H V  Y+DD++V  ++ AS VD +    + L  H+LK++  K+ +GA E +F+GHTISP  GV+P+  +V AL K+ MP +V +LRS LGGLSYYRKFLPN++  ++P+T LLKK   F FT  ME  +R +L     PPVLV+PD++A  DGSR FRLYCDAS  GFG TLEQ Q + SIRPIV++SR  L +E+ W P++ +AG IVW+IKRLR Y++   F  +TDH  L    +V   N RVQRW+EFLTAYNY   + KG+A+GN D L
Sbjct:  272 PVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNL-HGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISP-DGVRPNGAKVAALTKMPMPRDVKQLRSLLGGLSYYRKFLPNMATRIRPLTTLLKKQATFVFTLAMEQAVRILLSELANPPVLVYPDWDAVSDGSRPFRLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEAGSIVWSIKRLRGYLWGTKFRIFTDHKSLEHFAKVGENNARVQRWLEFLTAYNYTLEYRKGSANGNADFL 689          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE)

HSP 1 Score: 397 bits (1021), Expect = 1.670e-127
Identity = 202/420 (48.10%), Postives = 282/420 (67.14%), Query Frame = 1
Query:   31 PIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            P+ SR YR NP VA++VD+I+++ L A +I+ S SPY++P+VV+ KK+G +RI  +YR+LN+   + Q PI R D+ LD L    ++S FDM S FHQI +  +++PL AF T+S L+E+L +P G+S +PG F +V+ +V  +L H V  Y+DD++V  +  A+ V  +    + L  H+LK++  K+ IGA E +F+GHTISP  GV+P+  +V AL K+ MP +V +LRS LGGLSYYRKFLP ++K ++ +T LLKK   F FT  ME  +R +L     PPVLV+PD++A  DGSR F LYCDAS  GFG TLEQ Q + SIRPIV++SR  L +E+ W P++ +A  IVW IKRLR Y++   F   TDH  L    +V   N RVQRW+EFLTAY+      KG+A+GN D L
Sbjct:  167 PVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGWFCKVVNEVIKNL-HGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISP-DGVRPNGAKVSALTKMPMPRDVKQLRSLLGGLSYYRKFLPFMAKRIRYLTTLLKKQEKFIFTPSMEQAVRVLLAELANPPVLVYPDWDAVSDGSRPFHLYCDASRDGFGGTLEQEQPDGSIRPIVFISRATLDSERHWTPLDLEASSIVWCIKRLRGYLWGTKFRILTDHKSLEHFAKVGENNARVQRWLEFLTAYSCTLECRKGSANGNADFL 584          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5JJR1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR1_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 2.350e-127
Identity = 201/420 (47.86%), Postives = 281/420 (66.90%), Query Frame = 1
Query:   31 PIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            P+ SR YR NP VA+ VD+I+++ L A +I+ S SPY++P+VV+ KK+G +RI  +YR+LN+   + Q PI R D+ LD L    ++S FD+ S FHQI +  +++PL AF T+SGL+E+L +P G+S +PG F +V+ + +         Y+DD++V  +D A+ V  +      L  H+LK++  K+ IGA E +F+GHTISP  GV+P+  +V AL K+ MP +V +LRS LGGLSYYRKFLPN++K ++P+T LLKK   F FT  ME  +R +L     PPVL +PD++A  DGSR   LYCDAS  GFGATLEQ Q ++SIRPIV++SR  L +E+ W P++ +AG IVW IKRLR Y++       TDH  L    +V   N  VQRW+EFLTAYNY   + KG+A+GN D L
Sbjct:   29 PVTSRPYRVNPPVAKIVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDIKSSFHQITV-HDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEAS---------YLDDLIVF-DDAATHVGTMRALFDCLRTHNLKLTPPKATIGATEADFLGHTISP-DGVRPNGAKVSALTKMPMPRDVEQLRSLLGGLSYYRKFLPNMAKRIRPLTTLLKKQEKFIFTPSMEQAVRVLLAELANPPVLDYPDWDAVSDGSRPLHLYCDASRDGFGATLEQEQPDSSIRPIVFISRATLDSERHWTPLDLEAGSIVWCIKRLRGYLWGTKCRIITDHKSLEHFAKVGENNAHVQRWLEFLTAYNYTLENRKGSANGNADFL 436          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5JUV3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV3_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 8.670e-123
Identity = 191/413 (46.25%), Postives = 271/413 (65.62%), Query Frame = 1
Query:   52 RYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            ++   VA++V++I ++ L A +I+ S SPY++P+V++ KK+G + I  +YR+LN+   + Q PI R D+ LD L    ++S FDM S FHQI +  +++PL AF T+S L+E+L +P G+S +PG F +V+ +V  +L H V  Y+DD++V  +   + V  +    + L  H+LK++  ++ IGA E +F+ HTISP  GV P   +V AL K+ MP +V +LRS LGGLSYYRKFLPN++K ++P+T LLKK   F FT  ME  +R +      PPVLV+PD++A  DGSR F LYCDAS  GFG TLEQ Q + SIRPIV +SR  L +E+ W P + +AG IVW IK LR Y++   F  +TDH PL    +    N RVQ W+EFLTAYNY   + KG+A+GN D L
Sbjct:   61 KFGREVAKQVEAIHDQYLAAGLIQHSTSPYSSPLVIIPKKSGGVCITVNYRKLNKLCALGQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGRFCKVVNEVIKNL-HDVASYLDDLIVFDDTLPTHVGTMRTLFERLRTHNLKLTPPQATIGATEADFLRHTISP-DGVGPTGAKVSALTKMPMPRDVKQLRSLLGGLSYYRKFLPNMAKRIRPLTTLLKKQEKFIFTPSMEQAVRVLFAELANPPVLVYPDWDAVSDGSRPFHLYCDASHDGFGGTLEQEQPDGSIRPIVSISRATLDSERHWTPHDLEAGSIVWCIKCLRGYLWGTKFRIFTDHKPLEHFAKAGENNARVQGWLEFLTAYNYTLEYRKGSANGNADFL 471          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5L6E5_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E5_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 4.650e-120
Identity = 192/420 (45.71%), Postives = 265/420 (63.10%), Query Frame = 1
Query:   31 PIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            P+ SR YR NP VA++VD+I+++ L A +I+ S SPY++P+VV+ KK+GS+RI  +YR+LN+     Q PI R D+ LD L    ++S FDM S FHQI +  +++PL AF T SGL++             H  R            V  Y+DD++V  +   + V  +      L  H+LK +  K+ IGA E +F+GHTISP  GV+P+  +V AL K+ MP +V +LRS LGGL+YY KFLPN++K ++P+T LLKK   F FT  ME  +  +L     PPVLV+PD++A  DGSR F L+CDAS  GFG TLEQ Q + S+RPIV++SR  L +E+ W P++ +AG IVW IKRLR Y++   F  +TDH  L    +V   N RVQRW+EFLTA NY   + KG+A+GN D L
Sbjct:   74 PVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGSVRITVNYRKLNKLFAFSQPPIPRVDDTLDNLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTCSGLFD-------------HQLRG-----------VASYLDDLIVFDDTPTTHVGTMRALFDCLRTHNLKFTPPKATIGATEEDFLGHTISP-DGVRPNGAKVSALTKMPMPRDVKQLRSLLGGLNYYPKFLPNMAKHIRPLTTLLKKQEKFIFTPSMEQAVCVLLAELANPPVLVYPDWDAVSDGSRPFHLHCDASRDGFGGTLEQEQPDGSLRPIVFISRATLDSERHWTPLDLEAGSIVWCIKRLRGYLWGTKFRIFTDHKSLEHFAKVGENNARVQRWLEFLTADNYTLEYRKGSANGNADFL 468          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5JP96_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP96_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 4.970e-120
Identity = 189/404 (46.78%), Postives = 274/404 (67.82%), Query Frame = 1
Query:   79 VDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            VD+I+++ L A +I+ S SP ++P+VV+ KK+G +RI  +YR+LN+   + Q PI R D+ L  L+   ++S FDM S FHQI +  +++PL AF T+SGL+E+L +P G++ +PG + +V+ +V  +L   V  Y+DD++V     A+ V  I    + L  H+LK++   + IGA E  F+GHTISP  GV+P+ ++V AL K+ MP +  +LR+ LGGLS YRKFLP ++K ++P+T LLKK+V F FT  ME+ +R++L     PPVLV+PD++A  DGSR FRLY DAS  GFG TLEQ Q + S+RPIV+ SR  L +E+ W P++ +AG IVW IKRLR Y++   F  +TDH  L  L +V   N RVQRW+EFLTAY+Y   + KG+++GN D L
Sbjct:    4 VDAILDQYLAAGLIQHSTSPCSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPILRVDDTLKLLKG-EIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWYCKVVNEVIKNLRG-VASYLDDLIVFDATLAAHVATIRSLFERLRTHNLKLTPPNATIGATEAEFLGHTISP-DGVRPNGDKVIALTKMPMPIDTKQLRALLGGLSNYRKFLPQMAKRVRPLTTLLKKNVKFEFTDSMESAVRQLLAELASPPVLVYPDWDAVSDGSRPFRLYYDASKDGFGGTLEQEQPDGSVRPIVFDSRATLESERHWTPLDLEAGSIVWCIKRLRGYLWGTHFKIFTDHKSLEHLAKVGETNARVQRWLEFLTAYSYTLEYRKGSSNGNADFL 404          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5K248_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K248_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 3.930e-119
Identity = 190/423 (44.92%), Postives = 276/423 (65.25%), Query Frame = 1
Query:   64 VVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDY--------------IERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            +  ++VD+I+++ L A +I+ S SPY+ P+VV+ KK+G +RI  + R+LN+   + Q PI R D+ L  L    ++S FDM S FHQI +  +++PL AF T+SGL+E+L +P G++ +PG F +V+ +V  +L   V  Y+DD++V     A+ V                I    + L  H+LK++  K+ IGA E  F+GHTISP  GV+P+ ++V AL K+ MPN+  +LR+ LGGL+YYRKFLP ++K ++P+T LLKKDV F F   ME+ +R++L     PPVLV+PD++A  DGSR FRLY DAS  GFG TLEQ Q + S+RPIV++SR  L +E+ W P++ +AG IVW IK LR Y++   F  +T H  L  L +V   N RVQRW+EFLTAY+Y   + KG+++GN D L
Sbjct:  184 IALQKVDAILDQYLAAGLIQHSTSPYSIPLVVIPKKSGGLRITVNNRKLNKLCALSQLPIPRVDDTLAKLLKGKIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSAAAPGWFCKVVNEVIRNLRG-VASYLDDLIVFDETPAAHVAXSGQCCCPRMVLQATIRSLFERLRTHNLKLTPSKATIGATEAEFLGHTISP-DGVRPNGDKVIALTKMPMPNDTKQLRALLGGLTYYRKFLPQMAKRVRPLTTLLKKDVKFEFMDSMESAVRQLLAELASPPVLVYPDWDAVSDGSRPFRLYYDASKDGFGGTLEQEQPDGSVRPIVFVSRATLESERHWTPLDIEAGSIVWCIKHLRGYLWGTYFKIFTYHKSLEHLAKVGETNARVQRWLEFLTAYSYTLEYRKGSSNGNADFL 604          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5KPN8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN8_9PHAE)

HSP 1 Score: 380 bits (977), Expect = 1.070e-117
Identity = 195/422 (46.21%), Postives = 283/422 (67.06%), Query Frame = 1
Query:   31 PIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDE--ASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            P+ASR YR NP++ + VD+++++ L A +I+ S SP+A+P+V + KK+GS+RI  +Y+RL     +   P+ R D +LD+L +  +FS FD+ S FHQI+  E++VPL AFCT + L+E+L +P G + SP  F +V+ +V   L   V  Y+DDV +C ++E    +++ IE FK+ L +++LK+S  K+ +GA   NF+GHTISP  GV PD  +V AL  +  P NV +LRS LGGLSYYRKFL NL+  ++P+  LLK+ V F++T  M  V++ +L    +PP+LV PD+ A  D SR FRL  DA   GFGA+LEQ Q N S+RPIVY+SR  LP E++W  ++ +AG IVW IKRLR Y++L  F  Y+DH  L S+ +V   N RVQRW+EFL+ + Y   + KG+A+GN D +
Sbjct:  755 PVASRPYRINPLMQKNVDAVLDQYLAAGLIQHSTSPWASPLVAIPKKDGSVRITVNYKRLKALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLER-VLAYLDDV-ICFDEEPLGHVLNLIEFFKR-LRQYNLKLSAGKARVGATHANFLGHTISP-AGVSPDGVKVRALTHMPPPTNVKQLRSLLGGLSYYRKFLKNLATKVRPLNSLLKQGVPFKYTPGMVMVVKTLLSELARPPILVFPDWAAIEDNSRPFRLCSDACIDGFGASLEQEQLNGSVRPIVYISRATLPAERNWTVLDLEAGGIVWAIKRLRGYLWLTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADNI 1172          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5L5E4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E4_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 8.550e-117
Identity = 194/422 (45.97%), Postives = 282/422 (66.82%), Query Frame = 1
Query:   31 PIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDE--ASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            P+ASR YR NP++  +VD+++++ L A +I+ S SP+A+P+VV+ KK+GS+RI  +Y+RLN    +   P+ R D +LD+L +  +FS FD+ S FHQI+  E++VPL AFCT + L+E+L +  G + SP  F +V+ +V   L   V  Y+DDV +C ++E    +++ IE FK+ L +++LK+S  K+ +GA   NF+GHTISP  GV PD  +V AL  +  P NV +LRS LGGLSYYRKFL NL+  ++P+  LLK+ V F++T  M  V++ +L    +PP+LV PD+ A  D SR  RL  DA   GFGA+LEQ Q + S+RPIVY+SR  LP E++W  ++ +AG IVW IKRLR Y++   F  Y+DH  L S+ +V   N RVQRW+EFL+ + Y   + KG+A+GN D L
Sbjct:   57 PVASRPYRINPLMQNKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMLQGANASPSWFVKVINRVVHGLER-VLAYLDDV-ICFDEEPLGHVLNLIEFFKR-LRQYNLKLSPGKARVGATHANFLGHTISP-AGVSPDGVKVRALTHMPPPTNVKQLRSLLGGLSYYRKFLKNLATKVRPLNSLLKQGVPFKYTPGMVKVVKTLLSELARPPILVFPDWAAIEDNSRPLRLCSDACIDGFGASLEQEQLDGSVRPIVYISRATLPAERNWTVLDLEAGGIVWAIKRLRGYLWSTKFIIYSDHKALESIGKVGEHNARVQRWLEFLSNFTYTLKYRKGSANGNADFL 474          
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Match: A0A6H5J8H9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H9_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 8.390e-116
Identity = 182/416 (43.75%), Postives = 269/416 (64.66%), Query Frame = 1
Query:   43 RSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAPIVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSFDMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQVTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSEIGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSYYRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVHPDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPNEQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINTRVQRWVEFLTAYNYRTIHGKGAAHGNTDTL 1290
            R    NP+V ++VD+I+++ L   +I++SQSP+A+P+VV+ KK+G++R+  +Y+ L +   + Q P  R D ++D+L    +FS FD+ S FHQI + E++V L AFCT + L+E+L +P G+S +P  F  V+ +V     H V  Y+DDV+V   D    V     F   L K++LK+S  KS +GA+E  ++GHTISP  GV P A++V+AL K+ +PNNV +LR  L GLSYYRKF+  L+  ++P+T LL+KD  F +T  M   + E+L   ++PPVL  PD++A  DGSR   L CDA   GFGA LEQ Q + S+RPI+++SR  L +E++W  ++ +AG IVW IKRLR Y +   F  Y+DH  L S+++V   N RVQRW+EFL + NY  ++  G A+ N D L
Sbjct:    3 RRLALNPLVEKKVDAILDQYLAVGLIQQSQSPWASPLVVMPKKDGNLRLTVNYKTLKKLCSLGQQPQPRVDHIIDSLHKGKVFSIFDLNSAFHQITVEEDTVQLTAFCTPTQLFEWLRMPQGSSVAPSWFTMVINEVVKGPDH-VLAYLDDVIVFDADPVHHVANTRLFLGRLGKYNLKLSPLKSRVGAKEAVYLGHTISP-AGVSPRADKVEALIKMPLPNNVKQLRFLLAGLSYYRKFIKGLAVRVKPLTDLLRKDAKFCYTPAMADTVEELLAKLSEPPVLAFPDWDAVADGSRSLWLCCDACVDGFGAALEQAQADGSVRPILFVSRATLESERNWTVLDLEAGSIVWAIKRLRGYFWPTHFLIYSDHKALESIVKVGEHNARVQRWLEFLFSSNYTLVYRNGTANANADFL 416          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1237.1795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUZ4_9PHAE1.400e-13249.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFL9_9PHAE1.670e-12748.10Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JJR1_9PHAE2.350e-12747.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUV3_9PHAE8.670e-12346.25Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6E5_9PHAE4.650e-12045.71RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP96_9PHAE4.970e-12046.78Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K248_9PHAE3.930e-11944.92Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KPN8_9PHAE1.070e-11746.21Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5E4_9PHAE8.550e-11745.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8H9_9PHAE8.390e-11643.75Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1237contigF-serratus_M_contig1237:253726..255018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score264.2
Seed ortholog evalue1e-67
Seed eggNOG ortholog28532.XP_010541181.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3-hydroxyisobutyryl-CoA hydrolase activity
EggNOG OGs37NRU@33090,3GGV0@35493,3HXPF@3699,COG2801@1,KOG0017@2759
COG Functional cat.I
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size1293
Cds size1293
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.9663372-CDS-F-serratus_M_contig1237:253725..2550181622929157.9663372-CDS-F-serratus_M_contig1237:253725..255018Fucus serratus maleCDSF-serratus_M_contig1237 253726..255018 -
1690962727.9140773-CDS-F-serratus_M_contig1237:253725..2550181690962727.9140773-CDS-F-serratus_M_contig1237:253725..255018Fucus serratus maleCDSF-serratus_M_contig1237 253726..255018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1237.1795.1prot_F-serratus_M_contig1237.1795.1Fucus serratus malepolypeptideF-serratus_M_contig1237 253726..255018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1237.1795.1

>prot_F-serratus_M_contig1237.1795.1 ID=prot_F-serratus_M_contig1237.1795.1|Name=mRNA_F-serratus_M_contig1237.1795.1|organism=Fucus serratus male|type=polypeptide|length=431bp
EIKLKEDVKTPIASRSYRYNPVVAREVDSIIEKCLKACIIRRSQSPYAAP
IVVVLKKNGSIRIICDYRRLNEATVIPQTPISRTDELLDTLESASLFSSF
DMMSGFHQIMIGENSVPLKAFCTASGLYEFLVIPMGTSGSPGHFQRVMQQ
VTADLAHFVTIYIDDVLVCSNDEASMVDYIERFKKALTKHSLKVSLDKSE
IGAEEINFMGHTISPRGGVKPDANRVDALRKLTMPNNVTELRSFLGGLSY
YRKFLPNLSKTLQPITKLLKKDVAFRFTAEMETVIREMLRVRTKPPVLVH
PDFEAARDGSRKFRLYCDASAAGFGATLEQPQKNNSIRPIVYLSRTVLPN
EQDWAPVEEKAGCIVWTIKRLRQYVFLIPFGTYTDHSPLISLLRVEAINT
RVQRWVEFLTAYNYRTIHGKGAAHGNTDTL*
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mRNA from alignment at F-serratus_M_contig1237:253726..255018-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1237.1795.1 ID=mRNA_F-serratus_M_contig1237.1795.1|Name=mRNA_F-serratus_M_contig1237.1795.1|organism=Fucus serratus male|type=mRNA|length=1293bp|location=Sequence derived from alignment at F-serratus_M_contig1237:253726..255018- (Fucus serratus male)
GAAATCAAGCTGAAAGAAGACGTGAAAACACCAATTGCTTCGCGCAGCTA TAGGTACAATCCAGTGGTAGCGAGAGAAGTCGATTCGATAATCGAGAAGT GCCTAAAAGCATGCATCATAAGACGCTCGCAATCACCATATGCCGCTCCA ATAGTCGTTGTACTAAAGAAAAACGGGAGCATTCGAATTATCTGCGACTA TAGGCGACTAAACGAAGCTACGGTTATCCCGCAGACGCCAATCTCTCGTA CTGATGAGCTATTAGATACGTTAGAATCGGCAAGCTTATTTAGCTCTTTT GATATGATGTCGGGATTCCATCAAATCATGATCGGAGAAAACAGTGTACC GCTCAAAGCATTTTGTACTGCCTCTGGTTTGTACGAGTTTCTGGTGATAC CTATGGGAACATCGGGCTCCCCCGGACACTTTCAACGAGTCATGCAGCAA GTCACAGCAGACTTGGCACATTTTGTGACCATTTACATCGATGATGTGTT GGTTTGTAGTAACGATGAGGCCAGCATGGTTGACTACATCGAAAGGTTCA AGAAGGCTCTTACTAAACATAGCCTAAAAGTATCTCTCGATAAATCAGAG ATCGGTGCCGAAGAGATAAATTTTATGGGTCATACGATATCACCACGAGG AGGTGTTAAGCCGGATGCTAACAGAGTCGACGCATTACGTAAGTTAACTA TGCCGAACAACGTAACGGAGCTAAGATCATTTCTCGGTGGGTTGAGCTAT TACCGAAAATTCCTGCCAAATTTATCGAAGACGTTACAACCGATCACCAA ACTACTCAAGAAAGACGTAGCGTTTCGCTTCACTGCAGAGATGGAGACAG TTATACGGGAAATGCTCAGAGTACGGACGAAACCTCCAGTACTGGTGCAC CCAGATTTCGAAGCGGCCCGCGATGGCTCGCGGAAATTCCGTCTGTACTG TGATGCTAGCGCAGCCGGGTTCGGGGCCACTCTAGAGCAGCCACAGAAAA ATAATTCGATACGGCCGATAGTGTACTTGAGCCGTACAGTGCTGCCTAAC GAGCAAGATTGGGCGCCAGTCGAAGAAAAAGCAGGATGTATCGTGTGGAC CATTAAGCGTCTGCGGCAATACGTGTTCTTGATCCCGTTTGGTACATACA CGGATCATTCGCCTCTTATTAGTCTACTGCGGGTTGAGGCTATCAACACC CGGGTGCAACGATGGGTAGAGTTCCTAACGGCATACAATTACAGAACAAT CCATGGGAAAGGTGCTGCTCACGGTAACACAGATACGCTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1237:253726..255018-

>mRNA_F-serratus_M_contig1237.1795.1 ID=mRNA_F-serratus_M_contig1237.1795.1|Name=mRNA_F-serratus_M_contig1237.1795.1|organism=Fucus serratus male|type=CDS|length=2586bp|location=Sequence derived from alignment at F-serratus_M_contig1237:253726..255018- (Fucus serratus male)
GAAATCAAGCTGAAAGAAGACGTGAAAACACCAATTGCTTCGCGCAGCTA
TAGGTACAATCCAGTGGTAGCGAGAGAAGTCGATTCGATAATCGAGAAGT
GCCTAAAAGCATGCATCATAAGACGCTCGCAATCACCATATGCCGCTCCA
ATAGTCGTTGTACTAAAGAAAAACGGGAGCATTCGAATTATCTGCGACTA
TAGGCGACTAAACGAAGCTACGGTTATCCCGCAGACGCCAATCTCTCGTA
CTGATGAGCTATTAGATACGTTAGAATCGGCAAGCTTATTTAGCTCTTTT
GATATGATGTCGGGATTCCATCAAATCATGATCGGAGAAAACAGTGTACC
GCTCAAAGCATTTTGTACTGCCTCTGGTTTGTACGAGTTTCTGGTGATAC
CTATGGGAACATCGGGCTCCCCCGGACACTTTCAACGAGTCATGCAGCAA
GTCACAGCAGACTTGGCACATTTTGTGACCATTTACATCGATGATGTGTT
GGTTTGTAGTAACGATGAGGCCAGCATGGTTGACTACATCGAAAGGTTCA
AGAAGGCTCTTACTAAACATAGCCTAAAAGTATCTCTCGATAAATCAGAG
ATCGGTGCCGAAGAGATAAATTTTATGGGTCATACGATATCACCACGAGG
AGGTGTTAAGCCGGATGCTAACAGAGTCGACGCATTACGTAAGTTAACTA
TGCCGAACAACGTAACGGAGCTAAGATCATTTCTCGGTGGGTTGAGCTAT
TACCGAAAATTCCTGCCAAATTTATCGAAGACGTTACAACCGATCACCAA
ACTACTCAAGAAAGACGTAGCGTTTCGCTTCACTGCAGAGATGGAGACAG
TTATACGGGAAATGCTCAGAGTACGGACGAAACCTCCAGTACTGGTGCAC
CCAGATTTCGAAGCGGCCCGCGATGGCTCGCGGAAATTCCGTCTGTACTG
TGATGCTAGCGCAGCCGGGTTCGGGGCCACTCTAGAGCAGCCACAGAAAA
ATAATTCGATACGGCCGATAGTGTACTTGAGCCGTACAGTGCTGCCTAAC
GAGCAAGATTGGGCGCCAGTCGAAGAAAAAGCAGGATGTATCGTGTGGAC
CATTAAGCGTCTGCGGCAATACGTGTTCTTGATCCCGTTTGGTACATACA
CGGATCATTCGCCTCTTATTAGTCTACTGCGGGTTGAGGCTATCAACACC
CGGGTGCAACGATGGGTAGAGTTCCTAACGGCATACAATTACAGAACAAT
CCATGGGAAAGGTGCTGCTCACGGTAACACAGATACGCTGTAGGAAATCA
AGCTGAAAGAAGACGTGAAAACACCAATTGCTTCGCGCAGCTATAGGTAC
AATCCAGTGGTAGCGAGAGAAGTCGATTCGATAATCGAGAAGTGCCTAAA
AGCATGCATCATAAGACGCTCGCAATCACCATATGCCGCTCCAATAGTCG
TTGTACTAAAGAAAAACGGGAGCATTCGAATTATCTGCGACTATAGGCGA
CTAAACGAAGCTACGGTTATCCCGCAGACGCCAATCTCTCGTACTGATGA
GCTATTAGATACGTTAGAATCGGCAAGCTTATTTAGCTCTTTTGATATGA
TGTCGGGATTCCATCAAATCATGATCGGAGAAAACAGTGTACCGCTCAAA
GCATTTTGTACTGCCTCTGGTTTGTACGAGTTTCTGGTGATACCTATGGG
AACATCGGGCTCCCCCGGACACTTTCAACGAGTCATGCAGCAAGTCACAG
CAGACTTGGCACATTTTGTGACCATTTACATCGATGATGTGTTGGTTTGT
AGTAACGATGAGGCCAGCATGGTTGACTACATCGAAAGGTTCAAGAAGGC
TCTTACTAAACATAGCCTAAAAGTATCTCTCGATAAATCAGAGATCGGTG
CCGAAGAGATAAATTTTATGGGTCATACGATATCACCACGAGGAGGTGTT
AAGCCGGATGCTAACAGAGTCGACGCATTACGTAAGTTAACTATGCCGAA
CAACGTAACGGAGCTAAGATCATTTCTCGGTGGGTTGAGCTATTACCGAA
AATTCCTGCCAAATTTATCGAAGACGTTACAACCGATCACCAAACTACTC
AAGAAAGACGTAGCGTTTCGCTTCACTGCAGAGATGGAGACAGTTATACG
GGAAATGCTCAGAGTACGGACGAAACCTCCAGTACTGGTGCACCCAGATT
TCGAAGCGGCCCGCGATGGCTCGCGGAAATTCCGTCTGTACTGTGATGCT
AGCGCAGCCGGGTTCGGGGCCACTCTAGAGCAGCCACAGAAAAATAATTC
GATACGGCCGATAGTGTACTTGAGCCGTACAGTGCTGCCTAACGAGCAAG
ATTGGGCGCCAGTCGAAGAAAAAGCAGGATGTATCGTGTGGACCATTAAG
CGTCTGCGGCAATACGTGTTCTTGATCCCGTTTGGTACATACACGGATCA
TTCGCCTCTTATTAGTCTACTGCGGGTTGAGGCTATCAACACCCGGGTGC
AACGATGGGTAGAGTTCCTAACGGCATACAATTACAGAACAATCCATGGG
AAAGGTGCTGCTCACGGTAACACAGATACGCTGTAG
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