mRNA_F-serratus_M_contig123.1753.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig123.1753.1
Unique NamemRNA_F-serratus_M_contig123.1753.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig123.1753.1 vs. uniprot
Match: D8LIE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.880e-24
Identity = 68/199 (34.17%), Postives = 105/199 (52.76%), Query Frame = 3 
Query:   57 TA*QVLWNDEVASVPKSSRRSFIGMFFV-----DDEIPLNETVVS-ARLPYERVNITGT---EPFTLLSNDMTVSLSQYVRIDASGRPNASPERTFSQVTTSGYHTLSLNSFRGETYDGALLFVTFNVNKFSYQSIEEVDPVDLATLLGSAGGMWEIICAVFAVLFVASQGTRPDKIWVFRKTAGQRTPNSAVNQNQAG 626
            +A  VLW+DEVA  P SS R FI  F V     DD++     V + ARLPY+R+++  T   E  T++SND+                          VTT+G  +L  ++   + + GA+LF TF++N+FS+Q++EE+D  D  +++G+AGGM  I+ A+F +LF  S+   P +IW F +   +R          AG
Sbjct:  107 SALSVLWSDEVAETPVSSTRQFINTFLVGEGDEDDDLDSENAVATLARLPYDRISVDATNASESITVVSNDV--------------------------VTTTGQQSLQFDN--ADPFSGAILFATFSINEFSFQTVEELDTSDYVSMVGAAGGMLVIVYALFGLLFAPSRSPGPRRIWRFSQRRRRRRSKLDFRPADAG 277
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BLAST of mRNA_F-serratus_M_contig123.1753.1 vs. uniprot
Match: A0A6H5JAB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.490e-17
Identity = 44/127 (34.65%), Postives = 77/127 (60.63%), Query Frame = 3 
Query:  246 TVSLSQYVRIDASGRPNASPERTFSQVTTSGYHTLSLNSFRGETYDGALLFVTFNVNKFSYQSIEEVDPVDLATLLGSAGGMWEIICAVFAVLFVASQGTRPDKIWVFRKTAGQRTPNSAVNQNQAG 626
            T+ L+++V +       ++ ER ++QVTT+G  +L L++   + + GA+LF TF++N+FS+Q++EE DP    +++G+AGGM  I+ A+F +LF  S+   P +IW F +   +R          AG
Sbjct:   31 TLELAEHVLLQPDEVTGSTTERGYTQVTTTGQQSLQLDN--ADPFSGAILFATFSINEFSFQTVEEYDPSHYPSMVGAAGGMLAIVYALFGLLFAPSRSPGPRRIWRFSRRRRKRRSKLDFRPADAG 155
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig123.1753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIE9_ECTSI5.880e-2434.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAB6_9PHAE2.490e-1734.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig123contigF-serratus_M_contig123:364646..369629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue9.1e-14
Seed eggNOG ortholog2880.D7FP33
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1079
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig123.1753.1prot_F-serratus_M_contig123.1753.1Fucus serratus malepolypeptideF-serratus_M_contig123 364774..369287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.4228132-UTR-F-serratus_M_contig123:364645..3647731622929147.4228132-UTR-F-serratus_M_contig123:364645..364773Fucus serratus maleUTRF-serratus_M_contig123 364646..364773 +
1690962724.9494944-UTR-F-serratus_M_contig123:364645..3647731690962724.9494944-UTR-F-serratus_M_contig123:364645..364773Fucus serratus maleUTRF-serratus_M_contig123 364646..364773 +
1622929147.5147026-UTR-F-serratus_M_contig123:369287..3696291622929147.5147026-UTR-F-serratus_M_contig123:369287..369629Fucus serratus maleUTRF-serratus_M_contig123 369288..369629 +
1690962724.9937246-UTR-F-serratus_M_contig123:369287..3696291690962724.9937246-UTR-F-serratus_M_contig123:369287..369629Fucus serratus maleUTRF-serratus_M_contig123 369288..369629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.4352863-CDS-F-serratus_M_contig123:364773..3648901622929147.4352863-CDS-F-serratus_M_contig123:364773..364890Fucus serratus maleCDSF-serratus_M_contig123 364774..364890 +
1690962724.9628055-CDS-F-serratus_M_contig123:364773..3648901690962724.9628055-CDS-F-serratus_M_contig123:364773..364890Fucus serratus maleCDSF-serratus_M_contig123 364774..364890 +
1622929147.454069-CDS-F-serratus_M_contig123:365327..3654051622929147.454069-CDS-F-serratus_M_contig123:365327..365405Fucus serratus maleCDSF-serratus_M_contig123 365328..365405 +
1690962724.9707534-CDS-F-serratus_M_contig123:365327..3654051690962724.9707534-CDS-F-serratus_M_contig123:365327..365405Fucus serratus maleCDSF-serratus_M_contig123 365328..365405 +
1622929147.4703884-CDS-F-serratus_M_contig123:368393..3685651622929147.4703884-CDS-F-serratus_M_contig123:368393..368565Fucus serratus maleCDSF-serratus_M_contig123 368394..368565 +
1690962724.9782841-CDS-F-serratus_M_contig123:368393..3685651690962724.9782841-CDS-F-serratus_M_contig123:368393..368565Fucus serratus maleCDSF-serratus_M_contig123 368394..368565 +
1622929147.4854755-CDS-F-serratus_M_contig123:369045..3692871622929147.4854755-CDS-F-serratus_M_contig123:369045..369287Fucus serratus maleCDSF-serratus_M_contig123 369046..369287 +
1690962724.9855626-CDS-F-serratus_M_contig123:369045..3692871690962724.9855626-CDS-F-serratus_M_contig123:369045..369287Fucus serratus maleCDSF-serratus_M_contig123 369046..369287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig123.1753.1

>prot_F-serratus_M_contig123.1753.1 ID=prot_F-serratus_M_contig123.1753.1|Name=mRNA_F-serratus_M_contig123.1753.1|organism=Fucus serratus male|type=polypeptide|length=203bp
MFFVDDEIPLNETVVSARLPYERVNITGTEPFTLLSNDMTVSLSQYVRID
ASGRPNASPERTFSQVTTSGYHTLSLNSFRGETYDGALLFVTFNVNKFSY
QSIEEVDPVDLATLLGSAGGMWEIICAVFAVLFVASQGTRPDKIWVFRKT
AGQRTPNSAVNQNQAGTCLGCYCLHRVKARALPRRRAPVTSFRDDHHSAT
FS*
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mRNA from alignment at F-serratus_M_contig123:364646..369629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig123.1753.1 ID=mRNA_F-serratus_M_contig123.1753.1|Name=mRNA_F-serratus_M_contig123.1753.1|organism=Fucus serratus male|type=mRNA|length=4984bp|location=Sequence derived from alignment at F-serratus_M_contig123:364646..369629+ (Fucus serratus male)
CAGACATATAGATAGTACAACGTCATTTTTAAGTAGTCTGTCGCTCTTCA
CGCAACACGGCCTGACAGGTACTCTGGAATGATGAGGTCGCCTCAGTCCC
GAAATCAAGCCGCCGAAGTTTTATCGGCATGTTCTTTGTAGACGATGAAA
TTCCTCTCAATGAAACGGTCGTCTCGGCGAGACTGCCTTACGAGCGGGTG
AATATTACGGGCACGGAGCCCTTCACCTTACTATCCAACGACATGGTGAG
AGGGGGCGCGTGCACTGCTTGTCGCCAAGTGCAATCCCTTGTTCACAGGA
ACCGCGCGTAATGTCGTCGTAGGCTGAAGGCCAGGGCTATCTTGAGGGCT
AATTAGAACGAGTCGGATTCCAGTGCCGAATCATCACCCCATCGCCCTCT
TTTACTCTACTGCCCTGACACGCTGTACTTGACATATAACATCTGGCTTC
CGCAAGTGCACTTTTACGAAGACGGAGCTCTCTGAGGAAAGCCGCACCTG
GCCAGAGCTTTGTTTTATTCCAAACAATGCGATTAGTAATTTCTCGATTA
ACCATTTTTTTGCAGGGGCAGCATATCCTTCTTCGACGACACTCTTGCCC
TCACGGGAACATTCGTATCGTTTCAACATTTGCATTAAGTTCAAGTAATT
TATTGACATATTTTTTGCTGCCGTGCGCCCAGACGGTGAGCTTGTCGCAG
TACGTGCGGATAGATGCGAGCGGCCGACCTAATGCATCGCCGGAGCGCAC
ATTCTCCCAGGTATGTGCGTAGTATATCGACGCAGTCCAGACTCTATCGC
AAGTTGAAAATATATATATTCTGGCGTTTATTTTCTGTCACTCCTCCATG
GTGGCGAGTTTGTTATCGCCGAGAATCGATCTAACGATGCACGCCACCAC
CGGCTGTCTGTGCGTTTGGAGACAAACAACAGCCAATCTATATTAAAAGC
AAAAATACTGAACTTCATCATCAGACATCGTAGCGCACAAGCGTTACCGT
AGATCGCGAGGAGAGGAGCCATTATTTGATGCTCGTTGCAAGATAGAACC
AACCATGAGATGGGTGAGCTCAACGTAACTGGGGTTTGCGTGATACCTGC
TCGACAAAGTGAAAGCGCAATTTTTACTATCAGTTCATAGTAACGGCAAT
TCACTTGCTGCATAATTAAAATACGCCACTACGCCGGTACTTTCAACATG
CCCACTTCATACCAATAGTGGGTGTGGAAAAGAGAGGCGCAAGTTAATTG
GTCCATGGTGATCTGCGAAGGCAGCACTCGTTCCGAACTACCTTGAGATT
AACTGGCCCTGTGACGGTGGACTCTCGGTAGTGAACACCATCGGTACGCA
AATGCATGACCCGACAAACTCGGGGCTGACTCGATGGCGTATGAGGTTTA
AAATAAATAAATGGACGCCGCCGCGGAACTCGGGAGGGATCCCGTAAGTA
AGCACCAGATTCAGCCTGGTATAGAGAATGAGCAGGCTGACGCGGGACGG
GACTGTGTACTGAATCTTAAGGACCTTACGTTCTACTAACTCCATGATAA
AGTGATAACGTACATCAATGTGCTTCGTCCGCCCCCGCTGATTGGTTTTC
TGCAATCGCGATTGCTCCTCTGTCGTCTTCAAACAAGTTAATAGTTTCAC
TGGCAAGCTCTGTGAATAACGCGGTGGCTACGTATTCTGCCTCACTAGTA
GAAATAGTAACACATTGCTGCGTAGTACTACTGGCACACAACTGTGCCCC
TACCATCACCGCCACTCCGGACACTGAACGCCTATCATTACCTGTATTGG
CGTAATCCGCGTCTACATACACGGAGAGCTTTCGGTCGCCATCCTTTACG
AGCACCAAACCTGGATCTTTCGTTTTATTCAGGTACGCGATTATTTTCCT
ACCGGCTCGTCAGTGCCTCTCAGCAGGATCGTGGGCTTGACGTACTACTG
CCCTAACCACATTGGCTATGTCTGGCCGCGTCATACCACTCAACCAAATC
AAACTACCAACAGTCGCCCGAACAGGTTTATCACAGACCGGCTCGTCGTT
TCCTCCTAGGGCCGAGATCTGCCGATTGAGAAGCCGGGAGATTAGACATT
GCGTCAACTCCATAGTGGCTGGCAACAGACTCGATATACGCTTTTATGCG
ATGCGCGAAGAACGCCTCCTTATCACGCTCAAACGCGCACCCTAGGTACC
ACGAGAGTTCCCCTCCCGTAGTCTGGAACTCGTGAAAAAGACAAACAATC
ATAACTACTACATCATCCCTAATCAGCCGGAAAGCACAACATTGAAGTCC
AAATCAGCCTGAATGAATGCTTGTTTTACATCTAGCTGTAGTAATTTCCA
GTCATATTTTGGCAGCAATAGCTACCAAGTTTAACACTGGACGCAGCTAA
ATATCAGGTGCCACATCTACGAATTCTCCCTATCAGAAATGGCAAAATCG
GCGTCCTTCACAACGTGAGGGCAGGAATTGGGATCTTCCAACATGCTGTT
TCCCCGCTTCGTTCTAGAAACAAGAAAAGCAGTGTCAGACGTAATCGACG
ATTTCCCCTCTTTCGAGAGGTCAACCGGGCCCGTACTCCGTACGCAGCCG
GTCAATGGTGAGCTTATCCCTTTCTCGCTCGAGCATCTGCTGAACCAAAT
TGTATTCATCAGGTAGAGCTCGCAGGAAAAGTAAACAAACGACCTCGTCT
TCAATCCGAACCATTGGACACACGTTGCGGACATCTTCAATCATTGCAGC
TGGTAAGGGAGCGTGGCGTAAAGTATCACGGTCTACACTACTTTCGATAG
CCCGTGAGAGAATCTTCCAAGCAATGAAATGCTTTTGTATATTCTCGTGG
GGAAAAGCCTCCTATAGAGCAGTGATGGACATTGTTTCGTCGGAACATCT
ACTCCTTCGGTAGAATTCCAAATGTCAGCAATGGAAATTTTACTCATTGG
GTACAAATTCCAAAAACATGCCGTCAAATTTGGCCAAGCAAATCAACATT
TGCTGCCAAGTTGGAAACATTAGTACCATCGAACAGAGGGACAATGTTTG
ACTTGGGTCTCACCATTTCCCCTCCGGTACGGCACAGCTCCGCTGTCTCC
GTTCTGCTGCTCGTTGAGGCAGGTCCTTTGGATCGGCACAGCTCCACTGT
CGCTGTTTCTGCTGCTCGCCCCTTTGAACAGCAGGACTCCTACTTTCTTC
GACTAACTGAAATTTTAACTTATATACTGCAGCCATCAGACGCAGCTGCT
CCGCAGATGTCGTCTCAAAACGATGAAAAGTCAGCAAACGATGGAGCTCC
GCTCCCTCGCTTGCCCTTGCTCTTGCTCTGAAAATCCAATAAACGATGAA
GCTCCGCTTCCCTCGTTCCCTCGTAGCGATGAACAGCCAGTAAACGGTGA
AGCTCCGTCTCGCGAGAACCAGTAAACGGTCAAGCACCGCTTGCCCCGTT
CCCTAGTGATAACGCTCCATTTCTGTCAGCCAGGCGCGAACGCGTGTTTG
TGTAGGGATAGGGATATACGTCTTTGTTTAACCTTCCTAGGAGTTCCAAC
ATGTTCAGCTGACCACGTGCAGGATTGGCAACCTTACCCGGTTGATCCAT
ACTCTTGCTATATGTGTGACCATACATACATACCATTGACTCCATCGGAA
ACAAATATCCTCACAAATCGGTGCGATTAGTGGCAGTGCGGCGGCGAGTA
ATAAGCGGATAAAGTTCAATTATACCGCTTGACGATCGCTGGCAGCAGGT
CACGACCAGCGGATATCACACCCTTTCCCTGAACAGTTTCAGGGGTGAAA
CGTACGACGGGGCTCTTCTATTCGTCACGTTCAATGTGAATAAGTTTTCG
TACCAATCCATCGAAGAGGTGGACCCCGTTGACCTAGCAACTCTGCTCGG
ATCCGCTGGCGGCATGTGGGGTGAGAGGCAAAATGTAATACCAGTAGCAT
CATAACTGTAATATTCTGTGCAGTATTCCACAATATTTAGAGTCGATATA
CCCTGTCCTGTTTCGCAACGTGTGTTAAGCGTTTCAAATCCGAAATCCAC
AGGTGGCACAATAACTGTAAGAGACCGTAAAAATACATTTTTTCGTTCTC
ACCTCGATCTTACGAGAGTGACTTAGTATAAAGGTTCCCCAAAGGCAAGA
CAACCTACCCCGCCCTCCAAGCTTCTGCGACTAAATTGTATTATATAGTG
CCAAATACCGCGTTATCCGGGGTGAAACGTCTGGACAGATATCAAGGCGC
GCATCGAGACGATGGTTTATAAAATTATGTAACCTCTCCTCTGAGCTTTA
GGATCTCGGTCCCAAACTCCTCACGTGATCTGTTTTCCCCTTCTTCACGC
CTCATGTCTTGTGTGTCTCTTTTGTCTCTCTCTCGCTCGAACTACTCCAG
AAATTATCTGTGCCGTGTTTGCGGTCCTCTTTGTTGCCAGTCAGGGCACT
AGACCCGACAAGATATGGGTTTTCAGGAAAACCGCAGGTCAAAGGACGCC
GAACTCCGCCGTCAATCAGAACCAAGCAGGGACATGTTTAGGGTGCTACT
GTTTACACAGAGTGAAGGCAAGGGCTTTGCCTCGACGAAGAGCACCCGTA
ACCAGCTTCAGGGATGACCATCATAGTGCAACTTTTAGTTGAGACGTCAA
AGTCTCATTCGGCACCTTGTCGGGTATGGATTCGAAGCTCTACATGCAGT
GTTTATTTTTGTACTGTACAATTGTTACGTATTTTGGGGCGGAAGGAGAG
AGGAGATGTTTTCCTTCGTTTTCCGTCTCGAAGAAACACGATCGATCGCT
GAGAATTTATTTCAGGGAGGGGGGGACATCGACGCGAACACAGATGTACT
CAACGTGCAGGTAGTCGAACGCCCTCGGTTGATTGACGTCGTTCCACCGC
ACCACCATCGTGCGCGAAACCGAAGCAAGTCATTTTTTTCTCTATCTTGA
CCTCGAAAAATATAAAACTGCGGCCTTTAATCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig123:364646..369629+

>mRNA_F-serratus_M_contig123.1753.1 ID=mRNA_F-serratus_M_contig123.1753.1|Name=mRNA_F-serratus_M_contig123.1753.1|organism=Fucus serratus male|type=CDS|length=1218bp|location=Sequence derived from alignment at F-serratus_M_contig123:364646..369629+ (Fucus serratus male)
ATGTTCTTTGTAGACGATGAAATTCCTCTCAATGAAACGGTCGTCTCGGC
GAGACTGCCTTACGAGCGGGTGAATATTACGGGCACGGAGCCCTTCACCT
TACTATCCAACGACATGATGTTCTTTGTAGACGATGAAATTCCTCTCAAT
GAAACGGTCGTCTCGGCGAGACTGCCTTACGAGCGGGTGAATATTACGGG
CACGGAGCCCTTCACCTTACTATCCAACGACATGACGGTGAGCTTGTCGC
AGTACGTGCGGATAGATGCGAGCGGCCGACCTAATGCATCGCCGGAGCGC
ACATTCTCCCAGACGGTGAGCTTGTCGCAGTACGTGCGGATAGATGCGAG
CGGCCGACCTAATGCATCGCCGGAGCGCACATTCTCCCAGGTCACGACCA
GCGGATATCACACCCTTTCCCTGAACAGTTTCAGGGGTGAAACGTACGAC
GGGGCTCTTCTATTCGTCACGTTCAATGTGAATAAGTTTTCGTACCAATC
CATCGAAGAGGTGGACCCCGTTGACCTAGCAACTCTGCTCGGATCCGCTG
GCGGCATGTGGGGTCACGACCAGCGGATATCACACCCTTTCCCTGAACAG
TTTCAGGGGTGAAACGTACGACGGGGCTCTTCTATTCGTCACGTTCAATG
TGAATAAGTTTTCGTACCAATCCATCGAAGAGGTGGACCCCGTTGACCTA
GCAACTCTGCTCGGATCCGCTGGCGGCATGTGGGAAATTATCTGTGCCGT
GTTTGCGGTCCTCTTTGTTGCCAGTCAGGGCACTAGACCCGACAAGATAT
GGGTTTTCAGGAAAACCGCAGGTCAAAGGACGCCGAACTCCGCCGTCAAT
CAGAACCAAGCAGGGACATGTTTAGGGTGCTACTGTTTACACAGAGTGAA
GGCAAGGGCTTTGCCTCGACGAAGAGCACCCGTAACCAGCTTCAGGGATG
ACCATCATAGTGCAACTTTTAGTTGAAAATTATCTGTGCCGTGTTTGCGG
TCCTCTTTGTTGCCAGTCAGGGCACTAGACCCGACAAGATATGGGTTTTC
AGGAAAACCGCAGGTCAAAGGACGCCGAACTCCGCCGTCAATCAGAACCA
AGCAGGGACATGTTTAGGGTGCTACTGTTTACACAGAGTGAAGGCAAGGG
CTTTGCCTCGACGAAGAGCACCCGTAACCAGCTTCAGGGATGACCATCAT
AGTGCAACTTTTAGTTGA
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