mRNA_F-serratus_M_contig123.1747.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig123.1747.1
Unique NamemRNA_F-serratus_M_contig123.1747.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A6H5K0G3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.160e-13
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADDLFKSRLV 201
            PNT+ +AMS PQ   WK    KE+A L+KH VY LVP  SVP G K++ +++V K   D  FK+RLV
Sbjct:  807 PNTYDKAMSYPQREEWKGVCSKEVADLRKHNVYNLVPLSSVPKGDKILGTKFVFKKMLDGRFKARLV 873          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A067MMT3_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MMT3_9AGAM)

HSP 1 Score: 61.6 bits (148), Expect = 5.260e-11
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADD-----LFKSRLVA 204
            P T+ EA + P +  W+   ++E+AS++KH VYELVP  SVP G+KV+ ++   K+K D       FK RLVA
Sbjct:    7 PATWTEACNSPYADNWREGYEEELASIRKHEVYELVPRSSVPKGRKVIQNKPCFKLKRDQDNNPARFKVRLVA 79          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0)

HSP 1 Score: 63.9 bits (154), Expect = 2.830e-10
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADDLFKSRLVA 204
            P T++EA+  P S +W+ A + E+ S+  + V+ LV A   P G KV++ +W+ K+KADD FK RLVA
Sbjct:  194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLVDA---PQGAKVIECKWIFKLKADDTFKGRLVA 258          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A6H5H6H4_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H6H4_9HEMI)

HSP 1 Score: 60.1 bits (144), Expect = 3.920e-9
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKAD-----DLFKSRLVA 204
            P T++EAM   ++A+WK A D EI SL +   +ELV    +P G+K+VD RWV K+K       D FK+R+VA
Sbjct:   27 PQTYREAMQTGEAAQWKAAMDDEIKSLIQMDTWELV---DLPPGKKLVDCRWVFKVKIKANGEFDKFKARVVA 96          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A6H5H5K9_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H5K9_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 4.750e-9
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKAD-----DLFKSRLVA 204
            P T++EAM   ++A+WK A D EI SL +   +ELV    +P G+K+VD RWV K+K       D FK+R+VA
Sbjct:  858 PQTYREAMQTEEAAQWKAAMDDEIKSLIQMDTWELV---DLPPGKKLVDCRWVFKVKIKANGEFDKFKARVVA 927          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: Q8WSJ0_ANOGA (Polyprotein (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WSJ0_ANOGA)

HSP 1 Score: 60.1 bits (144), Expect = 6.450e-9
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADD-----LFKSRLVA 204
            P T+KEA+S PQSA WKTA  +E+ S +++G +ELV    +P  +K + S+W+   KAD+      +K+RLVA
Sbjct:  704 PKTYKEAVSGPQSAEWKTAMAEEMQSHQENGTWELV---ELPPHRKAIGSKWIFNCKADEDGHFVRYKARLVA 773          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A5S6QM97_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QM97_TRIMR)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-8
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSAR--WKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK-----ADDLFKSRLVA 204
            P++++E  SLP   R  W  AA +E+ASLK   V+ELV    +PAG+KV+ S+WV KIK     A D +K+RLVA
Sbjct:  309 PSSWEEVTSLPPCERDKWIAAAKEEMASLKNRDVWELV---KLPAGRKVISSKWVFKIKRKADGAIDTYKARLVA 380          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A5S6QBM2_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QBM2_TRIMR)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-8
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSAR--WKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK-----ADDLFKSRLVA 204
            P++++E  SLP   R  W  AA +E+ASLK   V+ELV    +PAG+KV+ S+WV KIK     A D +K+RLVA
Sbjct:  341 PSSWEEVTSLPPCERDKWIAAAKEEMASLKNRDVWELV---KLPAGRKVISSKWVFKIKRKADGAIDTYKARLVA 412          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: A0A5S6QQI6_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QQI6_TRIMR)

HSP 1 Score: 58.5 bits (140), Expect = 2.240e-8
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSAR--WKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK-----ADDLFKSRLVA 204
            P++++E  +LP   R  W  AA +E+ASLK   V+ELV    +PAG+KV+ S+WV KIK     A D +K+RLVA
Sbjct:   86 PSSWEEVTNLPPCERDKWMAAAKEEMASLKNREVWELV---ELPAGRKVISSKWVFKIKRKADGAIDTYKARLVA 157          
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9)

HSP 1 Score: 58.2 bits (139), Expect = 3.110e-8
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 PNTFKEAMSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIKADD-----LFKSRLVA 204
            P T+KEA+S PQSA WK+A  +E+ S  ++G +EL     +P  +K + S+W+ K KAD+      +K+RLVA
Sbjct:  834 PKTYKEAVSGPQSAEWKSAMAEEMQSHHENGTWELA---ELPPHRKAIGSKWIFKCKADEDGHFVRYKARLVA 903          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig123.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0G3_9PHAE1.160e-1350.75CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A067MMT3_9AGAM5.260e-1143.84Uncharacterized protein (Fragment) n=1 Tax=Botryob... [more]
UPI00138F77A02.830e-1044.12Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A6H5H6H4_9HEMI3.920e-945.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5H5K9_9HEMI4.750e-945.21Integrase catalytic domain-containing protein n=1 ... [more]
Q8WSJ0_ANOGA6.450e-943.84Polyprotein (Fragment) n=1 Tax=Anopheles gambiae T... [more]
A0A5S6QM97_TRIMR1.190e-848.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A5S6QBM2_TRIMR1.210e-848.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A5S6QQI6_TRIMR2.240e-846.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0016589FE93.110e-842.47uncharacterized protein LOC118514016 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig123contigF-serratus_M_contig123:132893..133096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929146.9464066-CDS-F-serratus_M_contig123:132892..1330751622929146.9464066-CDS-F-serratus_M_contig123:132892..133075Fucus serratus maleCDSF-serratus_M_contig123 132893..133075 -
1690962724.6771057-CDS-F-serratus_M_contig123:132892..1330751690962724.6771057-CDS-F-serratus_M_contig123:132892..133075Fucus serratus maleCDSF-serratus_M_contig123 132893..133075 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929146.9625828-UTR-F-serratus_M_contig123:133075..1330961622929146.9625828-UTR-F-serratus_M_contig123:133075..133096Fucus serratus maleUTRF-serratus_M_contig123 133076..133096 -
1690962724.6978443-UTR-F-serratus_M_contig123:133075..1330961690962724.6978443-UTR-F-serratus_M_contig123:133075..133096Fucus serratus maleUTRF-serratus_M_contig123 133076..133096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig123.1747.1prot_F-serratus_M_contig123.1747.1Fucus serratus malepolypeptideF-serratus_M_contig123 132893..133075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig123.1747.1

>prot_F-serratus_M_contig123.1747.1 ID=prot_F-serratus_M_contig123.1747.1|Name=mRNA_F-serratus_M_contig123.1747.1|organism=Fucus serratus male|type=polypeptide|length=61bp
MSLPQSARWKTAADKEIASLKKHGVYELVPAFSVPAGQKVVDSRWVDKIK
ADDLFKSRLVA
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mRNA from alignment at F-serratus_M_contig123:132893..133096-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig123.1747.1 ID=mRNA_F-serratus_M_contig123.1747.1|Name=mRNA_F-serratus_M_contig123.1747.1|organism=Fucus serratus male|type=mRNA|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig123:132893..133096- (Fucus serratus male)
CCGAACACTTTCAAGGAGGCTATGAGCCTTCCCCAATCGGCACGATGGAA GACGGCGGCAGACAAGGAGATCGCCAGCCTCAAGAAGCACGGCGTATACG AGCTGGTACCTGCATTCTCCGTCCCTGCTGGACAAAAGGTGGTTGACTCA CGCTGGGTCGATAAGATCAAGGCGGACGACCTTTTCAAAAGTCGTCTGGT AGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig123:132893..133096-

>mRNA_F-serratus_M_contig123.1747.1 ID=mRNA_F-serratus_M_contig123.1747.1|Name=mRNA_F-serratus_M_contig123.1747.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig123:132893..133096- (Fucus serratus male)
ATGAGCCTTCCCCAATCGGCACGATGGAAGACGGCGGCAGACAAGGAGAT
CGCCAGCCTCAAGAAGCACGGCGTATACGAGCTGGTACCTGCATTCTCCG
TCCCTGCTGGACAAAAGGTGGTTGACTCACGCTGGGTCGATAAGATCAAG
GCGGACGACCTTTTCAAAAGTCGTCTGGTAGCGATGAGCCTTCCCCAATC
GGCACGATGGAAGACGGCGGCAGACAAGGAGATCGCCAGCCTCAAGAAGC
ACGGCGTATACGAGCTGGTACCTGCATTCTCCGTCCCTGCTGGACAAAAG
GTGGTTGACTCACGCTGGGTCGATAAGATCAAGGCGGACGACCTTTTCAA
AAGTCGTCTGGTAGCG
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